LOCUS pXLCSFV1-442.NS325UC 5502 bp ds-DNA circular SYN 17-JUN-2008
DEFINITION .
ACCESSION .
VERSION .
SOURCE .
ORGANISM .
.
FEATURES Location/Qualifiers
misc_feature 2838..4016
/ApEinfo_label=cyclin B2
/ApEinfo_fwdcolor=#00ff00
/ApEinfo_revcolor=green
misc_feature 4644..5315
/ApEinfo_label=influenza NS1 truncated CDS
/ApEinfo_fwdcolor=cyan
/ApEinfo_revcolor=green
misc_feature 4017..4186
/ApEinfo_label=cyclin B2 complete 3-UTR
/ApEinfo_fwdcolor=#ff8000
/ApEinfo_revcolor=#ff8000
misc_feature 2808..2808
/ApEinfo_label=GG_changed_to_C_by_IRESite
/ApEinfo_fwdcolor=#690f96
/ApEinfo_revcolor=#690f96
misc_feature 2783..2802
/ApEinfo_label=T7_promoter
/ApEinfo_fwdcolor=#ff0000
/ApEinfo_revcolor=#ff0000
misc_feature 1..17
/ApEinfo_label=SP6_promoter
/ApEinfo_fwdcolor=#ff0000
/ApEinfo_revcolor=#ff0000
misc_feature 5500..5502
/ApEinfo_label=SP6_promoter
/ApEinfo_fwdcolor=#ff0000
/ApEinfo_revcolor=#ff0000
misc_feature 1..1
/ApEinfo_label=SP6_polymerase_transcription start +1
/ApEinfo_fwdcolor=#800040
/ApEinfo_revcolor=#800040
misc_feature 2800..2800
/ApEinfo_label=T7_polymerase transcription start +1
/ApEinfo_fwdcolor=#800040
/ApEinfo_revcolor=#800040
misc_feature 4635..4643
/ApEinfo_label=Part_of_ORF_originating_from_polylinker
/ApEinfo_fwdcolor=#0000ff
/ApEinfo_revcolor=#0000ff
misc_feature 912..1772
/ApEinfo_label=bla_gene
/ApEinfo_fwdcolor=#004000
/ApEinfo_revcolor=#004000
misc_feature join(4188..4511,4514..4629)
/ApEinfo_label=CSFV_IRES_1-442
/ApEinfo_fwdcolor=#ff0000
/ApEinfo_revcolor=#ff0000
misc_feature 4512..4513
/ApEinfo_label=mutation_in_pseudoknot_stem_2
/ApEinfo_fwdcolor=#ff80ff
/ApEinfo_revcolor=#ff80ff
ORIGIN
1 TATAGTGTCA CCTAAATCGT ATGTGTATGA TACATAAGGT TATGTATTAA TTGTAGCCGC
61 GTTCTAACGA CAATATGTAC AAGCCTAATT GTGTAGCATC TGGCTTACTG AAGCAGACCC
121 TATCATCTCT CTCGTAAACT GCCGTCAGAG TCGGTTTGGT TGGACGAACC TTCTGAGTTT
181 CTGGTAACGC CGTTCCGCAC CCCGGAAATG GTCAGCGAAC CAATCAGCAG GGTCATCGCT
241 AGCCAGATCC TCTACGCCGG ACGCATCGTG GCCGGCATCA CCGGCGCCAC AGGTGCGGTT
301 GCTGGCGCCT ATATCGCCGA CATCACCGAT GGGGAAGATC GGGCTCGCCA CTTCGGGCTC
361 ATGAGCGCTT GTTTCGGCGT GGGTATGGTG GCAGGCCCCG TGGCCGGGGG ACTGTTGGGC
421 GCCATCTCCT TGCATGCACC ATTCCTTGCG GCGGCGGTGC TCAACGGCCT CAACCTACTA
481 CTGGGCTGCT TCCTAATGCA GGAGTCGCAT AAGGGAGAGC GTCGATATGG TGCACTCTCA
541 GTACAATCTG CTCTGATGCC GCATAGTTAA GCCAGCCCCG ACACCCGCCA ACACCCGCTG
601 ACGCGCCCTG ACGGGCTTGT CTGCTCCCGG CATCCGCTTA CAGACAAGCT GTGACCGTCT
661 CCGGGAGCTG CATGTGTCAG AGGTTTTCAC CGTCATCACC GAAACGCGCG AGACGAAAGG
721 GCCTCGTGAT ACGCCTATTT TTATAGGTTA ATGTCATGAT AATAATGGTT TCTTAGACGT
781 CAGGTGGCAC TTTTCGGGGA AATGTGCGCG GAACCCCTAT TTGTTTATTT TTCTAAATAC
841 ATTCAAATAT GTATCCGCTC ATGAGACAAT AACCCTGATA AATGCTTCAA TAATATTGAA
901 AAAGGAAGAG TATGAGTATT CAACATTTCC GTGTCGCCCT TATTCCCTTT TTTGCGGCAT
961 TTTGCCTTCC TGTTTTTGCT CACCCAGAAA CGCTGGTGAA AGTAAAAGAT GCTGAAGATC
1021 AGTTGGGTGC ACGAGTGGGT TACATCGAAC TGGATCTCAA CAGCGGTAAG ATCCTTGAGA
1081 GTTTTCGCCC CGAAGAACGT TTTCCAATGA TGAGCACTTT TAAAGTTCTG CTATGTGGCG
1141 CGGTATTATC CCGTATTGAC GCCGGGCAAG AGCAACTCGG TCGCCGCATA CACTATTCTC
1201 AGAATGACTT GGTTGAGTAC TCACCAGTCA CAGAAAAGCA TCTTACGGAT GGCATGACAG
1261 TAAGAGAATT ATGCAGTGCT GCCATAACCA TGAGTGATAA CACTGCGGCC AACTTACTTC
1321 TGACAACGAT CGGAGGACCG AAGGAGCTAA CCGCTTTTTT GCACAACATG GGGGATCATG
1381 TAACTCGCCT TGATCGTTGG GAACCGGAGC TGAATGAAGC CATACCAAAC GACGAGCGTG
1441 ACACCACGAT GCCTGTAGCA ATGGCAACAA CGTTGCGCAA ACTATTAACT GGCGAACTAC
1501 TTACTCTAGC TTCCCGGCAA CAATTAATAG ACTGGATGGA GGCGGATAAA GTTGCAGGAC
1561 CACTTCTGCG CTCGGCCCTT CCGGCTGGCT GGTTTATTGC TGATAAATCT GGAGCCGGTG
1621 AGCGTGGGTC TCGCGGTATC ATTGCAGCAC TGGGGCCAGA TGGTAAGCCC TCCCGTATCG
1681 TAGTTATCTA CACGACGGGG AGTCAGGCAA CTATGGATGA ACGAAATAGA CAGATCGCTG
1741 AGATAGGTGC CTCACTGATT AAGCATTGGT AACTGTCAGA CCAAGTTTAC TCATATATAC
1801 TTTAGATTGA TTTAAAACTT CATTTTTAAT TTAAAAGGAT CTAGGTGAAG ATCCTTTTTG
1861 ATAATCTCAT GACCAAAATC CCTTAACGTG AGTTTTCGTT CCACTGAGCG TCAGACCCCG
1921 TAGAAAAGAT CAAAGGATCT TCTTGAGATC CTTTTTTTCT GCGCGTAATC TGCTGCTTGC
1981 AAACAAAAAA ACCACCGCTA CCAGCGGTGG TTTGTTTGCC GGATCAAGAG CTACCAACTC
2041 TTTTTCCGAA GGTAACTGGC TTCAGCAGAG CGCAGATACC AAATACTGTC CTTCTAGTGT
2101 AGCCGTAGTT AGGCCACCAC TTCAAGAACT CTGTAGCACC GCCTACATAC CTCGCTCTGC
2161 TAATCCTGTT ACCAGTGGCT GCTGCCAGTG GCGATAAGTC GTGTCTTACC GGGTTGGACT
2221 CAAGACGATA GTTACCGGAT AAGGCGCAGC GGTCGGGCTG AACGGGGGGT TCGTGCACAC
2281 AGCCCAGCTT GGAGCGAACG ACCTACACCG AACTGAGATA CCTACAGCGT GAGCTATGAG
2341 AAAGCGCCAC GCTTCCCGAA GGGAGAAAGG CGGACAGGTA TCCGGTAAGC GGCAGGGTCG
2401 GAACAGGAGA GCGCACGAGG GAGCTTCCAG GGGGAAACGC CTGGTATCTT TATAGTCCTG
2461 TCGGGTTTCG CCACCTCTGA CTTGAGCGTC GATTTTTGTG ATGCTCGTCA GGGGGGCGGA
2521 GCCTATGGAA AAACGCCAGC AACGCGGCCT TTTTACGGTT CCTGGCCTTT TGCTGGCCTT
2581 TTGCTCACAT GTTCTTTCCT GCGTTATCCC CTGATTCTGT GGATAACCGT ATTACCGCCT
2641 TTGAGTGAGC TGATACCGCT CGCCGCAGCC GAACGACCGA GCGCAGCGAG TCAGTGAGCG
2701 AGGAAGCGGA AGAGCGCCCA ATACGCAAAC CGCCTCTCCC CGCGCGTTGG CCGATTCATT
2761 AATGCAGCTG GCTTATCGAA ATTAATACGA CTCACTATAG GGAGACCCAA GCTTGGGCAA
2821 ACGTTATTTT ACCGGAGATG GCTACTCGTC GCGCTGCTAT TCCCCGTGAA GCGGATAATA
2881 TCCTTGGGGG TGCAATGCGA TCCAAAGTTC AAATGAATAG CAGACGAGCT GCTTTGGGAG
2941 AGATTGGCAA CAAAGTGACT GTGCGAGGAA AACCACCTGC AGTAAAGCAG TCTTCCAATG
3001 CTGTGGCAAA GCCTTCAAAG ATGGCAGCAA CTAAAGTGGC AAATGTTAAG ACTAAGCATG
3061 TACCTGTGAA ACCAGTTGTA GCTGAAGCTG CCCCCAAAGT GCCTTCCCCT GTGCCGATGG
3121 ATGTGTCCTT GAAAGAGGAA GAGCTGTGCC AGGCATTCTC CGATGCACTG ACCAGTGTTG
3181 AAGACATTGA TGCAGATGAT GGTGGAAACC CTCAATTGTG CAGTGACTAT GTGATGGACA
3241 TCTATAACTA CCTTAAGCAA CTGGAAGTTC AACAGTCTGT ACATCCTTGC TATCTTGAAG
3301 GAAAAGAAAT TAATGAGCGT ATGAGAGCTA TCCTAGTTGA CTGGCTTGTT CAAGTGCATT
3361 CTAGGTTTCA GCTTCTTCAG GAGACTTTAT ACATGGGCGT TGCAATCATG GATCGCTTCT
3421 TACAAGTTCA GCCAGTCTCC CGCAGTAAGC TTCAGTTGGT TGGTGTTACT TCCCTACTAA
3481 TTGCTTCAAA ATATGAAGAG ATGTACACTC CAGAGGTTGC AGACTTTGTT TATATCACCG
3541 ATAATGCCTA TACTGCATCT CAGATCAGAG AAATGGAAAT GATTATCCTT CGACTCCTCA
3601 ACTTTGACCT TGGACGGCCA TTACCTCTCC ACTTCCTCAG ACGGGCTTCA AAATCTTGCA
3661 GTGCTGATGC AGAGCAACAT ACCCTTGCAA AATATTTGAT GGAGCTTACA CTCATAGACT
3721 ATGAAATGGT CCACATCAAG CCTTCAGAAA TTGCAGCTGC TGCCCTCTGC CTATCTCAAA
3781 AAATTCTTGG CCAGGGAACC TGGGGTACCA CTCAGCACTA TTACACAGGC TACACAGAAG
3841 GTGACTTGCA ACTGATCATG AAGCATATGG CTAAGAACAT AACCAAAGTC AACCAGAATC
3901 TAACAAAGCA TGTGGCTGTG AGGAACAAGT ATGCTAGCAG TAAACTGATG AAGATCAGCA
3961 CCCTTCCTCA GCTTATGGCT CCTCTAATCA CAGAGCTTGC TGCAAGTCTC TCTTAGAACT
4021 GTTAAGTGAC CCTTTCAAAG AGAACCACTA ATTGCACTTT TAACGTTGCT GCTGGCAAAT
4081 GCTGCTGTTC CTGTAAATAT GTTTGTATTT TTATTGACTC ATTTGTGAAC TTTGAGTAAT
4141 CAATGCTGTA ATGTCAGTAT GAAATAAAAC TTCACATTTT TTATTTGGTC GACGAGGTTA
4201 GCTCTTTCTC GTATACGATA TTGGATACAC TAAATTTCGA TTTGGTCTAG GGCACCCCTC
4261 CAGCGACGGC CGAAATGGGC TAGCCATGCC CATAGTAGGA CTAGCAAACG GAGGGACTAG
4321 CCGTAGTGGC GAGCTCCCTG GGTGGTCTAA GTCCTGAGTA CAGGACAGTC GTCAGTAGTT
4381 CGACGTGAGC ACTAGCCCAC CTCGAGATGC TACGTGGACG AGGGCATGCC CAAGACACAC
4441 CTTAACCCTG GCGGGGGTCG CTAGGGTGAA ATCACATTAT GTGATGGGGG TACGACCTGA
4501 TAGGGTGCTG CTCAGGCCCA CTAGCAGGCT AGTATAAAAA TCTCTGCTGT ACATGGCACA
4561 TGGAGTTGAA TCATTTTGAA TTATTATACA AAACAAGCAA ACAAAAACCA GTGGGAGTGG
4621 AGGAACCGGG TACCATGGAT CCCAGCTTTC AGGTAGATTG CTTTCTTTGG CATGTCCGCA
4681 AACGAGTTGC AGACCAAGAA CTAGGTGATG CCCCATTCCT TGATCGGCTT CGCCGAGATC
4741 AGAAATCCCT AAGAGGAAGG GGCAGCACCC TCGGTCTGGA CATCGAGACA GCCACACGTG
4801 CTGGAAAGCA GATAGTGGAG CGGATTCTGA AAGAAGAATC CGATGAGGCA CTTAAAATGA
4861 CCATGGCCTC TGTACCTGCG TCGCGTTACC TAACTGACAT GACTCTTGAG GAAATGTCAA
4921 GGGACTGGTC CATGCTCATA CCCAAGCAGA AAGTGGCAGG CCCTCTTTGT ATCAGAATGG
4981 ACCAGGCGAT CATGGATAAG AACATCATAC TGAAAGCGAA CTTCAGTGTG ATTTTTGACC
5041 GGCTGGAGAC TCTAATATTG CTAAGGGCTT TCACCGAAGA GGGAGCAATT GTTGGCGAAA
5101 TTTCACCATT GCCTTCTCTT CCAGGACATA CTGCTGAGGA TGTCAAAAAT GCAGTTGGAG
5161 TCCTCATCGG GGGACTTGAA TGGAATGATA ACACAGTTCG AGTCTCTGAA ACTCTACAGA
5221 GATTCGCTTG GAGAAGCAGT AATGAGAATG GGAGACCTCC ACTCACTCCA AAACAGAAAC
5281 GAGAAATGGC GGGAACAATT AGGTCAGAAG TTTGAAGAAA TAAGATGGTT GATTGAAGAA
5341 GTGAGACACA AACTGAAGAT AACAGAGAAT AGTTTTGAGC AAATAACATT TATGCAAGCC
5401 TTACATCTAT TGCTTGAAGT GGAGCAAGAG ATAAGAACTT TCTCGTTTCA GCTTATTTAA
5461 TAATAAAAAA CACCCTTGTT TCTACTGGAA TTCCGTGTAT TC
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