LOCUS hav_pa 7678 bp ds-DNA linear 23-MAY-2008 DEFINITION ACCESSION pHAV.IRES- KEYWORDS . SOURCE Unknown. ORGANISM Unknown Unclassified. REFERENCE 1 (bases 1 to 7678) AUTHORS Self JOURNAL Unpublished. COMMENT COMMENT ApEinfo:methylated:1 FEATURES Location/Qualifiers CDS complement(65..579) /gene="CEN6/ARSH4 ori" /label=CEN6/ARSH4 ori /ApEinfo_fwdcolor=#ff80ff /ApEinfo_revcolor=#ff80ff CDS 715..1575 /gene="beta lactamase" /label=beta lactamase /ApEinfo_fwdcolor=#7d0d82 /ApEinfo_revcolor=#ff80ff CDS 1576..2516 /gene="pMB1 ori" /label=pMB1 ori /ApEinfo_fwdcolor=#ff8040 /ApEinfo_revcolor=#ff80ff CDS 2757..2774 /gene="T3 promoter" /label=T3 promoter /ApEinfo_fwdcolor=#af0850 /ApEinfo_revcolor=#ff80ff CDS 2774..2774 /gene="T3 transcription start" /label=T3 transcription start /ApEinfo_fwdcolor=#ff0000 /ApEinfo_revcolor=#ff80ff CDS 2803..3654 /gene="HAV.IRES" /label=HAV.IRES /ApEinfo_fwdcolor=#808000 /ApEinfo_revcolor=#ff80ff CDS 3661..5313 /gene="FFluc" /label=FFluc /ApEinfo_fwdcolor=#ffff00 /ApEinfo_revcolor=#ff80ff CDS 5473..5568 /gene="96x(dA)" /label=96x(dA) /ApEinfo_fwdcolor=#0080ff /ApEinfo_revcolor=#ff80ff CDS 5583..5590 /gene="NotI - used for linearization" /label=NotI - used for linearization /ApEinfo_fwdcolor=#ff0000 /ApEinfo_revcolor=#ff80ff CDS 5799..6256 /gene="f1 ori" /label=f1 ori /ApEinfo_fwdcolor=#c0c0c0 /ApEinfo_revcolor=#ff80ff CDS complement(6517..7176) /gene="HIS3" /label=HIS3 /ApEinfo_fwdcolor=#ff80ff /ApEinfo_revcolor=#8000ff ORIGIN 1 GACGAAAGGG CCTCGTGATA CGCCTATTTT TATAGGTTAA TGTCATGATA ATAATGGTTT 61 CTTAGGACGG ATCGCTTGCC TGTAACTTAC ACGCGCCTCG TATCTTTTAA TGATGGAATA 121 ATTTGGGAAT TTACTCTGTG TTTATTTATT TTTATGTTTT GTATTTGGAT TTTAGAAAGT 181 AAATAAAGAA GGTAGAAGAG TTACGGAATG AAGAAAAAAA AATAAACAAA GGTTTAAAAA 241 ATTTCAACAA AAAGCGTACT TTACATATAT ATTTATTAGA CAAGAAAAGC AGATTAAATA 301 GATATACATT CGATTAACGA TAAGTAAAAT GTAAAATCAC AGGATTTTCG TGTGTGGTCT 361 TCTACACAGA CAAGATGAAA CAATTCGGCA TTAATACCTG AGAGCAGGAA GAGCAAGATA 421 AAAGGTAGTA TTTGTTGGCG ATCCCCCTAG AGTCTTTTAC ATCTTCGGAA AACAAAAACT 481 ATTTTTTCTT TAATTTCTTT TTTTACTTTC TATTTTTAAT TTATATATTT ATATTAAAAA 541 ATTTAAATTA TAATTATTTT TATAGCACGT GATGAAAAGG ACCCAGGTGG CACTTTTCGG 601 GGAAATGTGC GCGGAACCCC TATTTGTTTA TTTTTCTAAA TACATTCAAA TATGTATCCG 661 CTCATGAGAC AATAACCCTG ATAAATGCTT CAATAATATT GAAAAAGGAA GAGTATGAGT 721 ATTCAACATT TCCGTGTCGC CCTTATTCCC TTTTTTGCGG CATTTTGCCT TCCTGTTTTT 781 GCTCACCCAG AAACGCTGGT GAAAGTAAAA GATGCTGAAG ATCAGTTGGG TGCACGAGTG 841 GGTTACATCG AACTGGATCT CAACAGCGGT AAGATCCTTG AGAGTTTTCG CCCCGAAGAA 901 CGTTTTCCAA TGATGAGCAC TTTTAAAGTT CTGCTATGTG GCGCGGTATT ATCCCGTATT 961 GACGCCGGGC AAGAGCAACT CGGTCGCCGC ATACACTATT CTCAGAATGA CTTGGTTGAG 1021 TACTCACCAG TCACAGAAAA GCATCTTACG GATGGCATGA CAGTAAGAGA ATTATGCAGT 1081 GCTGCCATAA CCATGAGTGA TAACACTGCG GCCAACTTAC TTCTGACAAC GATCGGAGGA 1141 CCGAAGGAGC TAACCGCTTT TTTTCACAAC ATGGGGGATC ATGTAACTCG CCTTGATCGT 1201 TGGGAACCGG AGCTGAATGA AGCCATACCA AACGACGAGC GTGACACCAC GATGCCTGTA 1261 GCAATGGCAA CAACGTTGCG CAAACTATTA ACTGGCGAAC TACTTACTCT AGCTTCCCGG 1321 CAACAATTAA TAGACTGGAT GGAGGCGGAT AAAGTTGCAG GACCACTTCT GCGCTCGGCC 1381 CTTCCGGCTG GCTGGTTTAT TGCTGATAAA TCTGGAGCCG GTGAGCGTGG GTCTCGCGGT 1441 ATCATTGCAG CACTGGGGCC AGATGGTAAG CCCTCCCGTA TCGTAGTTAT CTACACGACG 1501 GGCAGTCAGG CAACTATGGA TGAACGAAAT AGACAGATCG CTGAGATAGG TGCCTCACTG 1561 ATTAAGCATT GGTAACTGTC AGACCAAGTT TACTCATATA TACTTTAGAT TGATTTAAAA 1621 CTTCATTTTT AATTTAAAAG GATCTAGGTG AAGATCCTTT TTGATAATCT CATGACCAAA 1681 ATCCCTTAAC GTGAGTTTTC GTTCCACTGA GCGTCAGACC CCGTAGAAAA GATCAAAGGA 1741 TCTTCTTGAG ATCCTTTTTT TCTGCGCGTA ATCTGCTGCT TGCAAACAAA AAAACCACCG 1801 CTACCAGCGG TGGTTTGTTT GCCGGATCAA GAGCTACCAA CTCTTTTTCC GAAGGTAACT 1861 GGCTTCAGCA GAGCGCAGAT ACCAAATACT GTCCTTCTAG TGTAGCCGTA GTTAGGCCAC 1921 CACTTCAAGA ACTCTGTAGC ACCGCCTACA TACCTCGCTC TGCTAATCCT GTTACCAGTG 1981 GCTGCTGCCA GTGGCGATAA GTCGTGTCTT ACCGGGTTGG ACTCAAGACG ATAGTTACCG 2041 GATAAGGCGC AGCGGTCGGG CTGAACGGGG GGTTCGTGCA CACAGCCCAG CTTGGAGCGA 2101 ACGACCTACA CCGAACTGAG ATACCTACAG CGTGAGCATT GAGAAAGCGC CACGCTTCCC 2161 GAAGGGAGAA AGGCGGACAG GTATCCGGTA AGCGGCAGGG TCGGAACAGG AGAGCGCACG 2221 AGGGAGCTTC CAGGGGGGAA CGCCTGGTAT CTTTATAGTC CTGTCGGGTT TCGCCACCTC 2281 TGACTTGAGC GTCGATTTTT GTGATGCTCG TCAGGGGGGC CGAGCCTATG GAAAAACGCC 2341 AGCAACGCGG CCTTTTTACG GTTCCTGGCC TTTTGCTGGC CTTTTGCTCA CATGTTCTTT 2401 CCTGCGTTAT CCCCTGATTC TGTGGATAAC CGTATTACCG CCTTTGAGTG AGCTGATACC 2461 GCTCGCCGCA GCCGAACGAC CGAGCGCAGC GAGTCAGTGA GCGAGGAAGC GGAAGAGCGC 2521 CCAATACGCA AACCGCCTCT CCCCGCGCGT TGGCCGATTC ATTAATGCAG CTGGCACGAC 2581 AGGTTTCCCG ACTGGAAAGC GGGCAGTGAG CGCAACGCAA TTAATGTGAG TTACCTCACT 2641 CATTAGGCAC CCCAGGCTTT ACACTTTATG CTTCCGGCTC CTATGTTGTG TGGAATTGTG 2701 AGCGGATAAC AATTTCACAC AGGAAACAGC TATGACCATG ATTACGCCAA GCTCGGAATT 2761 AACCCTCACT AAAGGGAACA AAAGCTGGTA CCGGGCCCCC CCTCCCTCTT GGAAGTCCCT 2821 GGTGAGGGGA CTTGATACCT CACCGCCGTT TGCCTAGGCT ATAGGCTAAA TTTTCCCTTT 2881 CCCTTTTCCC TTTCCCATTC CCTTTTGCTT GTAAATATTG ATTCCTGCAG GTTCAGGGTT 2941 CTTAAATCTG TTTCTCTATA AGAACACTCA TTTTCACGCT TTCTGTCTTC TTTCTTCCAG 3001 GGCTCTCCCC TTGCCCTAGG CTCTGGCCGT TGCGCCCGGC GGGGTCAACT CCATGATTAG 3061 CATGGAGCTG TAGGAGTCTA AATTGGGGAC ACAGATGTTT GGAACGTCAC CTTGCAGTGT 3121 TAACTTGGCT TTCATGAATC TCTTTGATCT TCCACAAGGG GTAGGCTACG GGTGAAACCT 3181 CTTAGGCTAA TACTTCTATG AAGAGATGCC TTGGATAGGG TAACAGCGGC GGATATTGGT 3241 GAGTTGTTAA GACAAAAACC ATTCAACGCC GGAGGACTGA CTCTCATCCA GTGGATGCAT 3301 TGAGTGGATT GACTGTCAGG GCTGTCTTTA GGCTTAATTC CAGACCTCTC TGTGCTTAGG 3361 GCAAACATCA TTTGGCCTTA AATGGGATTC TGTGAGAGGG GATCCCTCCA TTGACAGCTG 3421 GACTGTTCTT TGGGGCCTTA TGTGGTGTTT GCCTCTGAGG TACTCAGGGG CATTTAGGTT 3481 TTTCCTCATT CTTAAATAAT AATGAACATG TCTAGACAAG GTATTTTCCA GACTGTTGGG 3541 AGTGGTCTTG ACCACATCCT GTCTTTGGCA GACATTGAGG AAGAGCAAAT GATTCAATCA 3601 GTTGATAGGA CTGCAGTGAC TGGTGCTTCT TATTTTACTT CTGTGGATCA ATCTCGAGTC 3661 ATGGAAGACG CCAAAAACAT AAAGAAAGGC CCGGCGCCAT TCTATCCTCT AGAGGATGGA 3721 ACCGCTGGAG AGCAACTGCA TAAGGCTATG AAGAGATACG CCCTGGTTCC TGGAACAATT 3781 GCTTTTACAG ATGCACATAT CGAGGTGAAC ATCACGTACG CGGAATACTT CGAAATGTCC 3841 GTTCGGTTGG CAGAAGCTAT GAAACGATAT GGGCTGAATA CAAATCACAG AATCGTCGTA 3901 TGCAGTGAAA ACTCTCTTCA ATTCTTTATG CCGGTGTTGG GCGCGTTATT TATCGGAGTT 3961 GCAGTTGCGC CCGCGAACGA CATTTATAAT GAACGTGAAT TGCTCAACAG TATGAACATT 4021 TCGCAGCCTA CCGTAGTGTT TGTTTCCAAA AAGGGGTTGC AAAAAATTTT GAACGTGCAA 4081 AAAAAATTAC CAATAATCCA GAAAATTATT ATCATGGATT CTAAAACGGA TTACCAGGGA 4141 TTTCAGTCGA TGTACACGTT CGTCACATCT CATCTACCTC CCGGTTTTAA TGAATACGAT 4201 TTTGTACCAG AGTCCTTTGA TCGTGACAAA ACAATTGCAC TGATAATGAA TTCCTCTGGA 4261 TCTACTGGGT TACCTAAGGG TGTGGCCCTT CCGCATAGAA CTGCCTGCGT CAGATTCTCG 4321 CATGCCAGAG ATCCTATTTT TGGCAATCAA ATCATTCCGG ATACTGCGAT TTTAAGTGTT 4381 GTTCCATTCC ATCACGGTTT TGGAATGTTT ACTACACTCG GATATTTGAT ATGTGGATTT 4441 CGAGTCGTCT TAATGTATAG ATTTGAAGAA GAGCTGTTTT TACGATCCCT TCAGGATTAC 4501 AAAATTCAAA GTGCGTTGCT AGTACCAACC CTATTTTCAT TCTTCGCCAA AAGCACTCTG 4561 ATTGACAAAT ACGATTTATC TAATTTACAC GAAATTGCTT CTGGGGGCGC ACCTCTTTCG 4621 AAAGAAGTCG GGGAAGCGGT TGCAAAACGC TTCCATCTTC CAGGGATACG ACAAGGATAT 4681 GGGCTCACTG AGACTACATC AGCTATTCTG ATTACACCCG AGGGGGATGA TAAACCGGGC 4741 GCGGTCGGTA AAGTTGTTCC ATTTTTTGAA GCGAAGGTTG TGGATCTGGA TACCGGGAAA 4801 ACGCTGGGCG TTAATCAGAG AGGCGAATTA TGTGTCAGAG GACCTATGAT TATGTCCGGT 4861 TATGTAAACA ATCCGGAAGC GACCAACGCC TTGATTGACA AGGATGGATG GCTACATTCT 4921 GGAGACATAG CTTACTGGGA CGAAGACGAA CACTTCTTCA TAGTTGACCG CTTGAAGTCT 4981 TTAATTAAAT ACAAAGGATA TCAGGTGGCC CCCGCTGAAT TGGAATCGAT ATTGTTACAA 5041 CACCCCAACA TCTTCGACGC GGGCGTGGCA GGTCTTCCCG ACGATGACGC CGGTGAACTT 5101 CCCGCCGCCG TTGTTGTTTT GGAGCACGGA AAGACGATGA CGGAAAAAGA GATCGTGGAT 5161 TACGTCGCCA GTCAAGTAAC AACCGCGAAA AAGTTGCGCG GAGGAGTTGT GTTTGTGGAC 5221 GAAGTACCGA AAGGTCTTAC CGGAAAACTC GACGCAAGAA AAATCAGAGA GATCCTCATA 5281 AAGGCCAAGA AGGGCGGAAA GTCCAAATTG TAAAATGTAA CTGTATTCAG CGATGACGAA 5341 ATTCTTAGCT ATTGTAATAT TATATGCAAA TTGATGAATG GTAATTTTGT AATTGTGGGT 5401 CACTGTACTA TTTTAACGAA TAATAAAATC AGGTATAGGT AACTAAAAAG GAATTCTCCG 5461 CATTCGGTGC GGAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 5521 AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAGG GGATCCTCTA 5581 GAGCGGCCGC CACCGCGGTG GAGCTCCAAT TCGCCCTATA GTGAGTCGTA TTACAATTCA 5641 CTGGCCGTCG TTTTACAACG TCGTGACTGG GAAAACCCTG GCGTTACCCA ACTTAATCGC 5701 CTTGCAGCAC ATCCCCCCTT CGCCAGCTGG CGTAATAGCG AAGAGGCCCG CACCGATCGC 5761 CCTTCCCAAC AGTTGCGCAG CCTGAATGGC GAATGGCGCG ACGCGCCCTG TAGCGGCGCA 5821 TTAAGCGCGG CGGGTGTGGT GGTTACGCGC AGCGTGACCG CTACACTTGC CAGCGCCCTA 5881 GCGCCCGCTC CTTTCGCTTT CTTCCCTTCC TTTCTCGCCA CGTTCGCCGG CTTTCCCCGT 5941 CAAGCTCTAA ATCGGGGGCT CCCTTTAGGG TTCCGATTTA GTGCTTTACG GCACCTCGAC 6001 CCCAAAAAAC TTGATTAGGG TGATGGTTCA CGTAGTGGGC CATCGCCCTG ATAGACGGTT 6061 TTTCGCCCTT TGACGTTGGA GTCCACGTTC TTTAATAGTG GACTCTTGTT CCAAACTGGA 6121 ACAACACTCA ACCCTATCTC GGTCTATTCT TTTGATTTAT AAGGGATTTT GCCGATTTCG 6181 GCCTATTGGT TAAAAAATGA GCTGATTTAA CAAAAATTTA ACGCGAATTT TAACAAAATA 6241 TTAACGTTTA CAATTTCCTG ATGCGGTATT TTCTCCTTAC GCATCTGTGC GGTATTTCAC 6301 ACCGCATATG ATCCGTCGAG TTCAAGAGAA AAAAAAAGAA AAAGCAAAAA GAAAAAAGGA 6361 AAGCGCGCCT CGTTCAGAAT GACACGTATA GAATGATGCA TTACCTTGTC ATCTTCAGTA 6421 TCATACTGTT CGTATACATA CTTACTGACA TTCATAGGTA TACATATATA CACATGTATA 6481 TATATCGTAT GCTGCAGCTT TAAATAATCG GTGTCACTAC ATAAGAACAC CTTTGGTGGA 6541 GGGAACATCG TTGGTACCAT TGGGCGAGGT GGCTTCTCTT ATGGCAACCG CAAGAGCCTT 6601 GAACGCACTC TCACTACGGT GATGATCATT CTTGCCTCGC AGACAATCAA CGTGGAGGGT 6661 AATTCTGCTA GCCTCTGCAA AGCTTTCAAG AAAATGCGGG ATCATCTCGC AAGAGAGATC 6721 TCCTACTTTC TCCCTTTGCA AACCAAGTTC GACAACTGCG TACGGCCTGT TCGAAAGATC 6781 TACCACCGCT CTGGAAAGTG CCTCATCCAA AGGCGCAAAT CCTGATCCAA ACCTTTTTAC 6841 TCCACGCGCC AGTAGGGCCT CTTTAAAAGC TTGACCGAGA GCAATCCCGC AGTCTTCAGT 6901 GGTGTGATGG TCGTCTATGT GTAAGTCACC AATGCACTCA ACGATTAGCG ACCAGCCGGA 6961 ATGCTTGGCC AGAGCATGTA TCATATGGTC CAGAAACCCT ATACCTGTGT GGACGTTAAT 7021 CACTTGCGAT TGTGTGGCCT GTTCTGCTAC TGCTTCTGCC TCTTTTTCTG GGAAGATCGA 7081 GTGCTCTATC GCTAGGGGAC CACCCTTTAA AGAGATCGCA ATCTGAATCT TGGTTTCATT 7141 TGTAATACGC TTTACTAGGG CTTTCTGCTC TGTCATCTTT GCCTTCGTTT ATCTTGCCTG 7201 CTCATTTTTT AGTATATTCT TCGAAGAAAT CACATTACTT TATATAATGT ATAATTCATT 7261 ATGTGATAAT GCCAATCGCT AAGAAAAAAA AAGAGTCATC CGCTAGGTGG AAAAAAAAAA 7321 ATGAAAATCA TTACCGAGGC ATAAAAAAAT ATAGAGTGTA CTAGAGGAGG CCAAGAGTAA 7381 TAGAAAAAGA AAATTGCGGG AAAGGACTGT GTTATGACTT CCCTGACTAA TGCCGTGTTC 7441 AAACGATACC TGGCAGTGAC TCCTAGCGCT CACCAAGCTC TTAAAACGGA ATTATGGTGC 7501 ACTCTCAGTA CAATCTGCTC TGATGCCGCA TAGTTAAGCC AGCCCCGACA CCCGCCAACA 7561 CCCGCTGACG CGCCCTGACG GGCTTGTCTG CTCCCGGCAT CCGCTTACAG ACAAGCTGTG 7621 ACCGTCTCCG GGAGCTGCAT GTGTCAGAGG TTTTCACCGT CATCACCGAA ACGCGCGA //