LOCUS pRF_400_to__1 7256 bp ds-DNA circular 15-JUL-2008 SOURCE ORGANISM COMMENT COMMENT ApEinfo:methylated:1 FEATURES Location/Qualifiers promoter 34..347 /vntifkey="29" /label=SV40\promoter\and\enhancer /ApEinfo_fwdcolor=#ff0000 /ApEinfo_revcolor=#ff0000 CDS 721..1656 /vntifkey="4" /label=RLuc /ApEinfo_fwdcolor=#00ff00 /ApEinfo_revcolor=#00ff00 misc_feature 4205..4441 /label=Enhancer /ApEinfo_fwdcolor=#ff0000 /ApEinfo_revcolor=#ff0000 CDS 2280..3932 /vntifkey="4" /label=FLuc /ApEinfo_fwdcolor=#00ff00 /ApEinfo_revcolor=#00ff00 misc_feature 348..451 /label=SV40 Promoter /ApEinfo_fwdcolor=#ff0000 /ApEinfo_revcolor=#ff0000 misc_feature 348..397 /label=SV40 transcription start sites region /ApEinfo_fwdcolor=#ffb1be /ApEinfo_revcolor=#ffb1be rep_origin 4756..4756 /vntifkey="33" /label=ColE1-derived\plasmid\replication\origin /ApEinfo_fwdcolor=#00c0cb /ApEinfo_revcolor=#00c0cb misc_feature 516..648 /label=chimeric intron /ApEinfo_fwdcolor=cyan /ApEinfo_revcolor=cyan CDS complement(5518..6378) /vntifkey="4" /label=beta-lactamase /ApEinfo_fwdcolor=#00ff00 /ApEinfo_revcolor=#00ff00 misc_feature 693..711 /label=T7 promoter /ApEinfo_fwdcolor=cyan /ApEinfo_revcolor=cyan misc_feature 392..392 /label=SV40 transcription start (+1) /ApEinfo_fwdcolor=#ff00ff /ApEinfo_revcolor=#ff00ff rep_origin 6510..6965 /vntifkey="33" /label=F1\Origin /ApEinfo_fwdcolor=#00c0cb /ApEinfo_revcolor=#00c0cb misc_feature 710..710 /label=T7 transcription start (+1) /ApEinfo_fwdcolor=#ff0000 /ApEinfo_revcolor=#ff0000 misc_feature 397..397 /label=SV40 transcription start (+1)(1) /ApEinfo_label=SV40 transcription start (+1) /ApEinfo_fwdcolor=#ff00ff /ApEinfo_revcolor=#ff00ff polyA_signal 7096..7249 /vntifkey="25" /label=Synthetic\(upstream)\polyA\signal /ApEinfo_fwdcolor=#ff00cb /ApEinfo_revcolor=#ff00cb misc_feature 348..348 /label=SV40 transcription start (+1)(2) /ApEinfo_label=SV40 transcription start (+1) /ApEinfo_fwdcolor=#ff00ff /ApEinfo_revcolor=#ff00ff misc_feature 1672..2170 /vntifkey="21" /label=deltaEMCV /ApEinfo_fwdcolor=#d0ff00 /ApEinfo_revcolor=#d0ff00 misc_feature 386..386 /label=SV40 transcription start (+1)(3) /ApEinfo_label=SV40 transcription start (+1) /ApEinfo_fwdcolor=#fe00ff /ApEinfo_revcolor=#fe00ff misc_feature 3964..4185 /label=SV40 Late poly(A) signal /ApEinfo_fwdcolor=#ff0000 /ApEinfo_revcolor=#ff0000 misc_feature 2171..2176 /label=EcoRI /ApEinfo_fwdcolor=#ff0000 /ApEinfo_revcolor=#ff0000 misc_feature 2278..2283 /label=NcoI /ApEinfo_fwdcolor=#ff0000 /ApEinfo_revcolor=#ff0000 misc_feature 2177..2277 /label=LINE1 -101 to -1 from ORF2 /ApEinfo_fwdcolor=cyan /ApEinfo_revcolor=cyan ORIGIN 1 ggtaccgagc tcttacgcgt gctagcccga tctgcgcagc accatggcct gaaataacct 61 ctgaaagagg aacttggtta ggtaccttct gaggcggaaa gaaccagctg tggaatgtgt 121 gtcagttagg gtgtggaaag tccccaggct ccccagcagg cagaagtatg caaagcatgc 181 atctcaatta gtcagcaacc aggtgtggaa agtccccagg ctccccagca ggcagaagta 241 tgcaaagcat gcatctcaat tagtcagcaa ccatagtccc gcccctaact ccgcccatcc 301 cgcccctaac tccgcccagt tccgcccatt ctccgcccca tggctgaCTA ATTTTTTTTA 361 TTTATGCAGA GGCCGAGGCC GCCTCGGCCT CTGAGCTATT CCAGAAGTAG TGAGGAGGCT 421 TTTTTGGAGG CCTAGGCTTT TGCAAAAAGC Ttgattcttc tgacacaaca gtctcgaact 481 taagctgcag aagttggtcg tgaggcactg ggcagGTAAG TATCAAGGTT ACAAGACAGG 541 TTTAAGGAGA CCAATAGAAA CTGGGCTTGT CGAGACAGAG AAGACTCTTG CGTTTCTGAT 601 AGGCACCTAT TGGTCTTACT GACATCCACT TTGCCTTTCT CTCCACAGgt gtccactccc 661 agttcaatta cagctcttaa ggctagagta ctTAATACGA CTCACTATAG Gctagccacc 721 atgacttcga aagtttatga tccagaacaa aggaaacgga tgataactgg tccgcagtgg 781 tgggccagat gtaaacaaat gaatgttctt gattcattta ttaattatta tgattcagaa 841 aaacatgcag aaaatgctgt tattttttta catggtaacg cggcctcttc ttatttatgg 901 cgacatgttg tgccacatat tgagccagta gcgcggtgta ttataccaga ccttattggt 961 atgggcaaat caggcaaatc tggtaatggt tcttataggt tacttgatca ttacaaatat 1021 cttactgcat ggtttgaact tcttaattta ccaaagaaga tcatttttgt cggccatgat 1081 tggggtgctt gtttggcatt tcattatagc tatgagcatc aagataagat caaagcaata 1141 gttcacgctg aaagtgtagt agatgtgatt gaatcatggg atgaatggcc tgatattgaa 1201 gaagatattg cgttgatcaa atctgaagaa ggagaaaaaa tggttttgga gaataacttc 1261 ttcgtggaaa ccatgttgcc atcaaaaatc atgagaaagt tagaaccaga agaatttgca 1321 gcatatcttg aaccattcaa agagaaaggt gaagttcgtc gtccaacatt atcatggcct 1381 cgtgaaatcc cgttagtaaa aggtggtaaa cctgacgttg tacaaattgt taggaattat 1441 aatgcttatc tacgtgcaag tgatgattta ccaaaaatgt ttattgaatc ggacccagga 1501 ttcttttcca atgctattgt tgaaggtgcc aagaagtttc ctaatactga atttgtcaaa 1561 gtaaaaggtc ttcatttttc gcaagaagat gcacctgatg aaatgggaaa atatatcaaa 1621 tcgttcgttg agcgagttct caaaaatgaa caataattct aggggctcga gcgcccctct 1681 ccctcccccc cccctaacgt tactggccga agccgcttgg aataaggccg gtgtgcgttt 1741 gtctatatgt tattttccac catattgccg tcttttggca acgtgagggc ccggaaacct 1801 ggccctgtct tcttgacgag caatcctaga gcttcttgaa gacaaacaac gtctgtagcg 1861 accctttgca ggcagcggaa ccccccacct ggcgacaggt gcctctgcgg ccaaaagcca 1921 cgtgtataag atacacctgc aaaggcggca caaccccagt gccacgttgt gagttggata 1981 gttgtggaaa gagtcaaatg gctctcctca agcgtattca acaaggggct gaaggatgcc 2041 cagaaggtac ccccttgtat gggatctgat ctggggcctc ggtgcacatg ctttacatgt 2101 gtttagtcga ggttaaaaaa acgtctaggc cccccgaacc acggggacgt ggttttcctt 2161 tgaaaaacac gaattcAATA ACAGAAAAAA ACCAATACAA GAACGGGAAC AACGCCCTAG 2221 AAAAAACAAG AAGGTAATCC CTCAACAAAC CTAAAAGAAG ACAGCCACAA GAACAGAcca 2281 tggaagacgc caaaaacata aagaaaggcc cggcgccatt ctatccgctg gaagatggaa 2341 ccgctggaga gcaactgcat aaggctatga agagatacgc cctggttcct ggaacaattg 2401 cttttacaga tgcacatatc gaggtggaca tcacttacgc tgagtacttc gaaatgtccg 2461 ttcggttggc agaagctatg aaacgatatg ggctgaatac aaatcacaga atcgtcgtat 2521 gcagtgaaaa ctctcttcaa ttctttatgc cggtgttggg cgcgttattt atcggagttg 2581 cagttgcgcc cgcgaacgac atttataatg aacgtgaatt gctcaacagt atgggcattt 2641 cgcagcctac cgtggtgttc gtttccaaaa aggggttgca aaaaattttg aacgtgcaaa 2701 aaaagctccc aatcatccaa aaaattatta tcatggattc taaaacggat taccagggat 2761 ttcagtcgat gtacacgttc gtcacatctc atctacctcc cggttttaat gaatacgatt 2821 ttgtgccaga gtccttcgat agggacaaga caattgcact gatcatgaac tcctctggat 2881 ctactggtct gcctaaaggt gtcgctctgc ctcatagaac tgcctgcgtg agattctcgc 2941 atgccagaga tcctattttt ggcaatcaaa tcattccgga tactgcgatt ttaagtgttg 3001 ttccattcca tcacggtttt ggaatgttta ctacactcgg atatttgata tgtggatttc 3061 gagtcgtctt aatgtataga tttgaagaag agctgtttct gaggagcctt caggattaca 3121 agattcaaag tgcgctgctg gtgccaaccc tattctcctt cttcgccaaa agcactctga 3181 ttgacaaata cgatttatct aatttacacg aaattgcttc tggtggcgct cccctctcta 3241 aggaagtcgg ggaagcggtt gccaagaggt tccatctgcc aggtatcagg caaggatatg 3301 ggctcactga gactacatca gctattctga ttacacccga gggggatgat aaaccgggcg 3361 cggtcggtaa agttgttcca ttttttgaag cgaaggttgt ggatctggat accgggaaaa 3421 cgctgggcgt taatcaaaga ggcgaactgt gtgtgagagg tcctatgatt atgtccggtt 3481 atgtaaacaa tccggaagcg accaacgcct tgattgacaa ggatggatgg ctacattctg 3541 gagacatagc ttactgggac gaagacgaac acttcttcat cgttgaccgc ctgaagtctc 3601 tgattaagta caaaggctat caggtggctc ccgctgaatt ggaatccatc ttgctccaac 3661 accccaacat cttcgacgca ggtgtcgcag gtcttcccga cgatgacgcc ggtgaacttc 3721 ccgccgccgt tgttgttttg gagcacggaa agacgatgac ggaaaaagag atcgtggatt 3781 acgtcgccag tcaagtaaca accgcgaaaa agttgcgcgg aggagttgtg tttgtggacg 3841 aagtaccgaa aggtcttacc ggaaaactcg acgcaagaaa aatcagagag atcctcataa 3901 aggccaagaa gggcggaaag atcgccgtgt aattctagag tcggggcggc cggccgcttc 3961 gagCAGACAT GATAAGATAC ATTGATGAGT TTGGACAAAC CACAACTAGA ATGCAGTGAA 4021 AAAAATGCTT TATTTGTGAA ATTTGTGATG CTATTGCTTT ATTTGTAACC ATTATAAGCT 4081 GCAATAAACA AGTTAACAAC AACAATTGCA TTCATTTTAT GTTTCAGGTT CAGGGGGAGG 4141 TGTGGGAGGT TTTTTAAAGC AAGTAAAACC TCTACAAATG TGGTAaaatc gataaggatc 4201 tgaaCGATGG AGCGGAGAAT GGGCGGAACT GGGCGGAGTT AGGGGCGGGA TGGGCGGAGT 4261 TAGGGGCGGG ACTATGGTTG CTGACTAATT GAGATGCATG CTTTGCATAC TTCTGCCTGC 4321 TGGGGAGCCT GGGGACTTTC CACACCTGGT TGCTGACTAA TTGAGATGCA TGCTTTGCAT 4381 ACTTCTGCCT GCTGGGGAGC CTGGGGACTT TCCACACCCT AACTGACACA CATTCCACAG 4441 Cggatccgtc gaccgatgcc cttgagagcc ttcaacccag tcagctcctt ccggtgggcg 4501 cggggcatga ctatcgtcgc cgcacttatg actgtcttct ttatcatgca actcgtagga 4561 caggtgccgg cagcgctctt ccgcttcctc gctcactgac tcgctgcgct cggtcgttcg 4621 gctgcggcga gcggtatcag ctcactcaaa ggcggtaata cggttatcca cagaatcagg 4681 ggataacgca ggaaagaaca tgtgagcaaa aggccagcaa aaggccagga accgtaaaaa 4741 ggccgcgttg ctggcgtttt tccataggct ccgcccccct gacgagcatc acaaaaatcg 4801 acgctcaagt cagaggtggc gaaacccgac aggactataa agataccagg cgtttccccc 4861 tggaagctcc ctcgtgcgct ctcctgttcc gaccctgccg cttaccggat acctgtccgc 4921 ctttctccct tcgggaagcg tggcgctttc tcatagctca cgctgtaggt atctcagttc 4981 ggtgtaggtc gttcgctcca agctgggctg tgtgcacgaa ccccccgttc agcccgaccg 5041 ctgcgcctta tccggtaact atcgtcttga gtccaacccg gtaagacacg acttatcgcc 5101 actggcagca gccactggta acaggattag cagagcgagg tatgtaggcg gtgctacaga 5161 gttcttgaag tggtggccta actacggcta cactagaaga acagtatttg gtatctgcgc 5221 tctgctgaag ccagttacct tcggaaaaag agttggtagc tcttgatccg gcaaacaaac 5281 caccgctggt agcggtggtt tttttgtttg caagcagcag attacgcgca gaaaaaaagg 5341 atctcaagaa gatcctttga tcttttctac ggggtctgac gctcagtgga acgaaaactc 5401 acgttaaggg attttggtca tgagattatc aaaaaggatc ttcacctaga tccttttaaa 5461 ttaaaaatga agttttaaat caatctaaag tatatatgag taaacttggt ctgacagtta 5521 ccaatgctta atcagtgagg cacctatctc agcgatctgt ctatttcgtt catccatagt 5581 tgcctgactc cccgtcgtgt agataactac gatacgggag ggcttaccat ctggccccag 5641 tgctgcaatg ataccgcgag acccacgctc accggctcca gatttatcag caataaacca 5701 gccagccgga agggccgagc gcagaagtgg tcctgcaact ttatccgcct ccatccagtc 5761 tattaattgt tgccgggaag ctagagtaag tagttcgcca gttaatagtt tgcgcaacgt 5821 tgttgccatt gctacaggca tcgtggtgtc acgctcgtcg tttggtatgg cttcattcag 5881 ctccggttcc caacgatcaa ggcgagttac atgatccccc atgttgtgca aaaaagcggt 5941 tagctccttc ggtcctccga tcgttgtcag aagtaagttg gccgcagtgt tatcactcat 6001 ggttatggca gcactgcata attctcttac tgtcatgcca tccgtaagat gcttttctgt 6061 gactggtgag tactcaacca agtcattctg agaatagtgt atgcggcgac cgagttgctc 6121 ttgcccggcg tcaatacggg ataataccgc gccacatagc agaactttaa aagtgctcat 6181 cattggaaaa cgttcttcgg ggcgaaaact ctcaaggatc ttaccgctgt tgagatccag 6241 ttcgatgtaa cccactcgtg cacccaactg atcttcagca tcttttactt tcaccagcgt 6301 ttctgggtga gcaaaaacag gaaggcaaaa tgccgcaaaa aagggaataa gggcgacacg 6361 gaaatgttga atactcatac tcttcctttt tcaatattat tgaagcattt atcagggtta 6421 ttgtctcatg agcggataca tatttgaatg tatttagaaa aataaacaaa taggggttcc 6481 gcgcacattt ccccgaaaag tgccacctga cgcgccctgt agcggcgcat taagcgcggc 6541 gggtgtggtg gttacgcgca gcgtgaccgc tacacttgcc agcgccctag cgcccgctcc 6601 tttcgctttc ttcccttcct ttctcgccac gttcgccggc tttccccgtc aagctctaaa 6661 tcgggggctc cctttagggt tccgatttag tgctttacgg cacctcgacc ccaaaaaact 6721 tgattagggt gatggttcac gtagtgggcc atcgccctga tagacggttt ttcgcccttt 6781 gacgttggag tccacgttct ttaatagtgg actcttgttc caaactggaa caacactcaa 6841 ccctatctcg gtctattctt ttgatttata agggattttg ccgatttcgg cctattggtt 6901 aaaaaatgag ctgatttaac aaaaatttaa cgcgaatttt aacaaaatat taacgcttac 6961 aatttgccat tcgccattca ggctgcgcaa ctgttgggaa gggcgatcgg tgcgggcctc 7021 ttcgctatta cgccagccca agctaccatg ataagtaagt aatattaagg tacgggaggt 7081 acttggagcg gccgcaataa aatatcttta ttttcattac atctgtgtgt tggttttttg 7141 tgtgaatcga tagtactaac atacgctctc catcaaaaca aaacgaaaca aaacaaacta 7201 gcaaaatagg ctgtccccag tgcaagtgca ggtgccagaa catttctcta tcgata //