LOCUS pRF_44_to__1 7199 bp ds-DNA circular 15-JUL-2008 SOURCE ORGANISM COMMENT COMMENT ApEinfo:methylated:1 FEATURES Location/Qualifiers promoter 34..347 /vntifkey="29" /label=SV40\promoter\and\enhancer /ApEinfo_fwdcolor=#ff0000 /ApEinfo_revcolor=#ff0000 CDS 721..1656 /vntifkey="4" /label=RLuc /ApEinfo_fwdcolor=#00ff00 /ApEinfo_revcolor=#00ff00 misc_feature 4148..4384 /label=Enhancer /ApEinfo_fwdcolor=#ff0000 /ApEinfo_revcolor=#ff0000 CDS 2223..3875 /vntifkey="4" /label=FLuc /ApEinfo_fwdcolor=#00ff00 /ApEinfo_revcolor=#00ff00 misc_feature 348..451 /label=SV40 Promoter /ApEinfo_fwdcolor=#ff0000 /ApEinfo_revcolor=#ff0000 misc_feature 348..397 /label=SV40 transcription start sites region /ApEinfo_fwdcolor=#ffb1be /ApEinfo_revcolor=#ffb1be rep_origin 4699..4699 /vntifkey="33" /label=ColE1-derived\plasmid\replication\origin /ApEinfo_fwdcolor=#00c0cb /ApEinfo_revcolor=#00c0cb misc_feature 516..648 /label=chimeric intron /ApEinfo_fwdcolor=cyan /ApEinfo_revcolor=cyan CDS complement(5461..6321) /vntifkey="4" /label=beta-lactamase /ApEinfo_fwdcolor=#00ff00 /ApEinfo_revcolor=#00ff00 misc_feature 693..711 /label=T7 promoter /ApEinfo_fwdcolor=cyan /ApEinfo_revcolor=cyan misc_feature 392..392 /label=SV40 transcription start (+1) /ApEinfo_fwdcolor=#ff00ff /ApEinfo_revcolor=#ff00ff rep_origin 6453..6908 /vntifkey="33" /label=F1\Origin /ApEinfo_fwdcolor=#00c0cb /ApEinfo_revcolor=#00c0cb misc_feature 710..710 /label=T7 transcription start (+1) /ApEinfo_fwdcolor=#ff0000 /ApEinfo_revcolor=#ff0000 misc_feature 397..397 /label=SV40 transcription start (+1)(1) /ApEinfo_label=SV40 transcription start (+1) /ApEinfo_fwdcolor=#ff00ff /ApEinfo_revcolor=#ff00ff polyA_signal 7039..7192 /vntifkey="25" /label=Synthetic\(upstream)\polyA\signal /ApEinfo_fwdcolor=#ff00cb /ApEinfo_revcolor=#ff00cb misc_feature 348..348 /label=SV40 transcription start (+1)(2) /ApEinfo_label=SV40 transcription start (+1) /ApEinfo_fwdcolor=#ff00ff /ApEinfo_revcolor=#ff00ff misc_feature 1672..2170 /vntifkey="21" /label=deltaEMCV /ApEinfo_fwdcolor=#d0ff00 /ApEinfo_revcolor=#d0ff00 misc_feature 386..386 /label=SV40 transcription start (+1)(3) /ApEinfo_label=SV40 transcription start (+1) /ApEinfo_fwdcolor=#fe00ff /ApEinfo_revcolor=#fe00ff misc_feature 3907..4128 /label=SV40 Late poly(A) signal /ApEinfo_fwdcolor=#ff0000 /ApEinfo_revcolor=#ff0000 misc_feature 2171..2176 /label=EcoRI /ApEinfo_fwdcolor=#ff0000 /ApEinfo_revcolor=#ff0000 misc_feature 2221..2226 /label=NcoI /ApEinfo_fwdcolor=#ff0000 /ApEinfo_revcolor=#ff0000 misc_feature 2177..2220 /label=LINE1 -44 to -1 from ORF2 /ApEinfo_fwdcolor=cyan /ApEinfo_revcolor=cyan ORIGIN 1 ggtaccgagc tcttacgcgt gctagcccga tctgcgcagc accatggcct gaaataacct 61 ctgaaagagg aacttggtta ggtaccttct gaggcggaaa gaaccagctg tggaatgtgt 121 gtcagttagg gtgtggaaag tccccaggct ccccagcagg cagaagtatg caaagcatgc 181 atctcaatta gtcagcaacc aggtgtggaa agtccccagg ctccccagca ggcagaagta 241 tgcaaagcat gcatctcaat tagtcagcaa ccatagtccc gcccctaact ccgcccatcc 301 cgcccctaac tccgcccagt tccgcccatt ctccgcccca tggctgaCTA ATTTTTTTTA 361 TTTATGCAGA GGCCGAGGCC GCCTCGGCCT CTGAGCTATT CCAGAAGTAG TGAGGAGGCT 421 TTTTTGGAGG CCTAGGCTTT TGCAAAAAGC Ttgattcttc tgacacaaca gtctcgaact 481 taagctgcag aagttggtcg tgaggcactg ggcagGTAAG TATCAAGGTT ACAAGACAGG 541 TTTAAGGAGA CCAATAGAAA CTGGGCTTGT CGAGACAGAG AAGACTCTTG CGTTTCTGAT 601 AGGCACCTAT TGGTCTTACT GACATCCACT TTGCCTTTCT CTCCACAGgt gtccactccc 661 agttcaatta cagctcttaa ggctagagta ctTAATACGA CTCACTATAG Gctagccacc 721 atgacttcga aagtttatga tccagaacaa aggaaacgga tgataactgg tccgcagtgg 781 tgggccagat gtaaacaaat gaatgttctt gattcattta ttaattatta tgattcagaa 841 aaacatgcag aaaatgctgt tattttttta catggtaacg cggcctcttc ttatttatgg 901 cgacatgttg tgccacatat tgagccagta gcgcggtgta ttataccaga ccttattggt 961 atgggcaaat caggcaaatc tggtaatggt tcttataggt tacttgatca ttacaaatat 1021 cttactgcat ggtttgaact tcttaattta ccaaagaaga tcatttttgt cggccatgat 1081 tggggtgctt gtttggcatt tcattatagc tatgagcatc aagataagat caaagcaata 1141 gttcacgctg aaagtgtagt agatgtgatt gaatcatggg atgaatggcc tgatattgaa 1201 gaagatattg cgttgatcaa atctgaagaa ggagaaaaaa tggttttgga gaataacttc 1261 ttcgtggaaa ccatgttgcc atcaaaaatc atgagaaagt tagaaccaga agaatttgca 1321 gcatatcttg aaccattcaa agagaaaggt gaagttcgtc gtccaacatt atcatggcct 1381 cgtgaaatcc cgttagtaaa aggtggtaaa cctgacgttg tacaaattgt taggaattat 1441 aatgcttatc tacgtgcaag tgatgattta ccaaaaatgt ttattgaatc ggacccagga 1501 ttcttttcca atgctattgt tgaaggtgcc aagaagtttc ctaatactga atttgtcaaa 1561 gtaaaaggtc ttcatttttc gcaagaagat gcacctgatg aaatgggaaa atatatcaaa 1621 tcgttcgttg agcgagttct caaaaatgaa caataattct aggggctcga gcgcccctct 1681 ccctcccccc cccctaacgt tactggccga agccgcttgg aataaggccg gtgtgcgttt 1741 gtctatatgt tattttccac catattgccg tcttttggca acgtgagggc ccggaaacct 1801 ggccctgtct tcttgacgag caatcctaga gcttcttgaa gacaaacaac gtctgtagcg 1861 accctttgca ggcagcggaa ccccccacct ggcgacaggt gcctctgcgg ccaaaagcca 1921 cgtgtataag atacacctgc aaaggcggca caaccccagt gccacgttgt gagttggata 1981 gttgtggaaa gagtcaaatg gctctcctca agcgtattca acaaggggct gaaggatgcc 2041 cagaaggtac ccccttgtat gggatctgat ctggggcctc ggtgcacatg ctttacatgt 2101 gtttagtcga ggttaaaaaa acgtctaggc cccccgaacc acggggacgt ggttttcctt 2161 tgaaaaacac gaattcGTAA TCCCTCAACA AACCTAAAAG AAGACAGCCA CAAGAACAGA 2221 ccatggaaga cgccaaaaac ataaagaaag gcccggcgcc attctatccg ctggaagatg 2281 gaaccgctgg agagcaactg cataaggcta tgaagagata cgccctggtt cctggaacaa 2341 ttgcttttac agatgcacat atcgaggtgg acatcactta cgctgagtac ttcgaaatgt 2401 ccgttcggtt ggcagaagct atgaaacgat atgggctgaa tacaaatcac agaatcgtcg 2461 tatgcagtga aaactctctt caattcttta tgccggtgtt gggcgcgtta tttatcggag 2521 ttgcagttgc gcccgcgaac gacatttata atgaacgtga attgctcaac agtatgggca 2581 tttcgcagcc taccgtggtg ttcgtttcca aaaaggggtt gcaaaaaatt ttgaacgtgc 2641 aaaaaaagct cccaatcatc caaaaaatta ttatcatgga ttctaaaacg gattaccagg 2701 gatttcagtc gatgtacacg ttcgtcacat ctcatctacc tcccggtttt aatgaatacg 2761 attttgtgcc agagtccttc gatagggaca agacaattgc actgatcatg aactcctctg 2821 gatctactgg tctgcctaaa ggtgtcgctc tgcctcatag aactgcctgc gtgagattct 2881 cgcatgccag agatcctatt tttggcaatc aaatcattcc ggatactgcg attttaagtg 2941 ttgttccatt ccatcacggt tttggaatgt ttactacact cggatatttg atatgtggat 3001 ttcgagtcgt cttaatgtat agatttgaag aagagctgtt tctgaggagc cttcaggatt 3061 acaagattca aagtgcgctg ctggtgccaa ccctattctc cttcttcgcc aaaagcactc 3121 tgattgacaa atacgattta tctaatttac acgaaattgc ttctggtggc gctcccctct 3181 ctaaggaagt cggggaagcg gttgccaaga ggttccatct gccaggtatc aggcaaggat 3241 atgggctcac tgagactaca tcagctattc tgattacacc cgagggggat gataaaccgg 3301 gcgcggtcgg taaagttgtt ccattttttg aagcgaaggt tgtggatctg gataccggga 3361 aaacgctggg cgttaatcaa agaggcgaac tgtgtgtgag aggtcctatg attatgtccg 3421 gttatgtaaa caatccggaa gcgaccaacg ccttgattga caaggatgga tggctacatt 3481 ctggagacat agcttactgg gacgaagacg aacacttctt catcgttgac cgcctgaagt 3541 ctctgattaa gtacaaaggc tatcaggtgg ctcccgctga attggaatcc atcttgctcc 3601 aacaccccaa catcttcgac gcaggtgtcg caggtcttcc cgacgatgac gccggtgaac 3661 ttcccgccgc cgttgttgtt ttggagcacg gaaagacgat gacggaaaaa gagatcgtgg 3721 attacgtcgc cagtcaagta acaaccgcga aaaagttgcg cggaggagtt gtgtttgtgg 3781 acgaagtacc gaaaggtctt accggaaaac tcgacgcaag aaaaatcaga gagatcctca 3841 taaaggccaa gaagggcgga aagatcgccg tgtaattcta gagtcggggc ggccggccgc 3901 ttcgagCAGA CATGATAAGA TACATTGATG AGTTTGGACA AACCACAACT AGAATGCAGT 3961 GAAAAAAATG CTTTATTTGT GAAATTTGTG ATGCTATTGC TTTATTTGTA ACCATTATAA 4021 GCTGCAATAA ACAAGTTAAC AACAACAATT GCATTCATTT TATGTTTCAG GTTCAGGGGG 4081 AGGTGTGGGA GGTTTTTTAA AGCAAGTAAA ACCTCTACAA ATGTGGTAaa atcgataagg 4141 atctgaaCGA TGGAGCGGAG AATGGGCGGA ACTGGGCGGA GTTAGGGGCG GGATGGGCGG 4201 AGTTAGGGGC GGGACTATGG TTGCTGACTA ATTGAGATGC ATGCTTTGCA TACTTCTGCC 4261 TGCTGGGGAG CCTGGGGACT TTCCACACCT GGTTGCTGAC TAATTGAGAT GCATGCTTTG 4321 CATACTTCTG CCTGCTGGGG AGCCTGGGGA CTTTCCACAC CCTAACTGAC ACACATTCCA 4381 CAGCggatcc gtcgaccgat gcccttgaga gccttcaacc cagtcagctc cttccggtgg 4441 gcgcggggca tgactatcgt cgccgcactt atgactgtct tctttatcat gcaactcgta 4501 ggacaggtgc cggcagcgct cttccgcttc ctcgctcact gactcgctgc gctcggtcgt 4561 tcggctgcgg cgagcggtat cagctcactc aaaggcggta atacggttat ccacagaatc 4621 aggggataac gcaggaaaga acatgtgagc aaaaggccag caaaaggcca ggaaccgtaa 4681 aaaggccgcg ttgctggcgt ttttccatag gctccgcccc cctgacgagc atcacaaaaa 4741 tcgacgctca agtcagaggt ggcgaaaccc gacaggacta taaagatacc aggcgtttcc 4801 ccctggaagc tccctcgtgc gctctcctgt tccgaccctg ccgcttaccg gatacctgtc 4861 cgcctttctc ccttcgggaa gcgtggcgct ttctcatagc tcacgctgta ggtatctcag 4921 ttcggtgtag gtcgttcgct ccaagctggg ctgtgtgcac gaaccccccg ttcagcccga 4981 ccgctgcgcc ttatccggta actatcgtct tgagtccaac ccggtaagac acgacttatc 5041 gccactggca gcagccactg gtaacaggat tagcagagcg aggtatgtag gcggtgctac 5101 agagttcttg aagtggtggc ctaactacgg ctacactaga agaacagtat ttggtatctg 5161 cgctctgctg aagccagtta ccttcggaaa aagagttggt agctcttgat ccggcaaaca 5221 aaccaccgct ggtagcggtg gtttttttgt ttgcaagcag cagattacgc gcagaaaaaa 5281 aggatctcaa gaagatcctt tgatcttttc tacggggtct gacgctcagt ggaacgaaaa 5341 ctcacgttaa gggattttgg tcatgagatt atcaaaaagg atcttcacct agatcctttt 5401 aaattaaaaa tgaagtttta aatcaatcta aagtatatat gagtaaactt ggtctgacag 5461 ttaccaatgc ttaatcagtg aggcacctat ctcagcgatc tgtctatttc gttcatccat 5521 agttgcctga ctccccgtcg tgtagataac tacgatacgg gagggcttac catctggccc 5581 cagtgctgca atgataccgc gagacccacg ctcaccggct ccagatttat cagcaataaa 5641 ccagccagcc ggaagggccg agcgcagaag tggtcctgca actttatccg cctccatcca 5701 gtctattaat tgttgccggg aagctagagt aagtagttcg ccagttaata gtttgcgcaa 5761 cgttgttgcc attgctacag gcatcgtggt gtcacgctcg tcgtttggta tggcttcatt 5821 cagctccggt tcccaacgat caaggcgagt tacatgatcc cccatgttgt gcaaaaaagc 5881 ggttagctcc ttcggtcctc cgatcgttgt cagaagtaag ttggccgcag tgttatcact 5941 catggttatg gcagcactgc ataattctct tactgtcatg ccatccgtaa gatgcttttc 6001 tgtgactggt gagtactcaa ccaagtcatt ctgagaatag tgtatgcggc gaccgagttg 6061 ctcttgcccg gcgtcaatac gggataatac cgcgccacat agcagaactt taaaagtgct 6121 catcattgga aaacgttctt cggggcgaaa actctcaagg atcttaccgc tgttgagatc 6181 cagttcgatg taacccactc gtgcacccaa ctgatcttca gcatctttta ctttcaccag 6241 cgtttctggg tgagcaaaaa caggaaggca aaatgccgca aaaaagggaa taagggcgac 6301 acggaaatgt tgaatactca tactcttcct ttttcaatat tattgaagca tttatcaggg 6361 ttattgtctc atgagcggat acatatttga atgtatttag aaaaataaac aaataggggt 6421 tccgcgcaca tttccccgaa aagtgccacc tgacgcgccc tgtagcggcg cattaagcgc 6481 ggcgggtgtg gtggttacgc gcagcgtgac cgctacactt gccagcgccc tagcgcccgc 6541 tcctttcgct ttcttccctt cctttctcgc cacgttcgcc ggctttcccc gtcaagctct 6601 aaatcggggg ctccctttag ggttccgatt tagtgcttta cggcacctcg accccaaaaa 6661 acttgattag ggtgatggtt cacgtagtgg gccatcgccc tgatagacgg tttttcgccc 6721 tttgacgttg gagtccacgt tctttaatag tggactcttg ttccaaactg gaacaacact 6781 caaccctatc tcggtctatt cttttgattt ataagggatt ttgccgattt cggcctattg 6841 gttaaaaaat gagctgattt aacaaaaatt taacgcgaat tttaacaaaa tattaacgct 6901 tacaatttgc cattcgccat tcaggctgcg caactgttgg gaagggcgat cggtgcgggc 6961 ctcttcgcta ttacgccagc ccaagctacc atgataagta agtaatatta aggtacggga 7021 ggtacttgga gcggccgcaa taaaatatct ttattttcat tacatctgtg tgttggtttt 7081 ttgtgtgaat cgatagtact aacatacgct ctccatcaaa acaaaacgaa acaaaacaaa 7141 ctagcaaaat aggctgtccc cagtgcaagt gcaggtgcca gaacatttct ctatcgata //