LOCUS pXLCSFV1-442.NSdelta164-179insC 5502 bp ds-DNA circular SYN 16-JUL-2008 DEFINITION . ACCESSION . VERSION . SOURCE . ORGANISM . . FEATURES Location/Qualifiers misc_feature 2838..4016 /ApEinfo_label=cyclin B2 /ApEinfo_fwdcolor=#00ff00 /ApEinfo_revcolor=green misc_feature 4629..5300 /ApEinfo_label=influenza NS1 truncated CDS /ApEinfo_fwdcolor=cyan /ApEinfo_revcolor=green misc_feature 4017..4186 /ApEinfo_label=cyclin B2 complete 3-UTR /ApEinfo_fwdcolor=#ff8000 /ApEinfo_revcolor=#ff8000 misc_feature 2808..2808 /ApEinfo_label=GG_changed_to_C_by_IRESite /ApEinfo_fwdcolor=#690f96 /ApEinfo_revcolor=#690f96 misc_feature 2783..2799 /ApEinfo_label=T7_promoter /ApEinfo_fwdcolor=#ff0000 /ApEinfo_revcolor=#ff0000 misc_feature 2800..2802 /ApEinfo_label=T7_promoter /ApEinfo_fwdcolor=#ff0000 /ApEinfo_revcolor=#ff0000 misc_feature 1..17 /ApEinfo_label=SP6_promoter /ApEinfo_fwdcolor=#ff0000 /ApEinfo_revcolor=#ff0000 misc_feature 5485..5487 /ApEinfo_label=SP6_promoter /ApEinfo_fwdcolor=#ff0000 /ApEinfo_revcolor=#ff0000 misc_feature 1..1 /ApEinfo_label=SP6_polymerase_transcription start +1 /ApEinfo_fwdcolor=#800040 /ApEinfo_revcolor=#800040 misc_feature 2800..2800 /ApEinfo_label=T7_polymerase transcription start +1 /ApEinfo_fwdcolor=#800040 /ApEinfo_revcolor=#800040 misc_feature 4620..4628 /ApEinfo_label=Part_of_ORF_originating_from_polylinker /ApEinfo_fwdcolor=#0000ff /ApEinfo_revcolor=#0000ff misc_feature 912..1772 /ApEinfo_label=bla_gene /ApEinfo_fwdcolor=#004000 /ApEinfo_revcolor=#004000 misc_feature join(4188..4350,4352..4614) /ApEinfo_label=CSFV_IRES_1-442 /ApEinfo_fwdcolor=#ff0000 /ApEinfo_revcolor=#ff0000 misc_feature 4351..4351 /ApEinfo_label=deletion_of_domain_IIIa_and_insertion_C /ApEinfo_fwdcolor=cyan /ApEinfo_revcolor=cyan ORIGIN 1 TATAGTGTCA CCTAAATCGT ATGTGTATGA TACATAAGGT TATGTATTAA TTGTAGCCGC 61 GTTCTAACGA CAATATGTAC AAGCCTAATT GTGTAGCATC TGGCTTACTG AAGCAGACCC 121 TATCATCTCT CTCGTAAACT GCCGTCAGAG TCGGTTTGGT TGGACGAACC TTCTGAGTTT 181 CTGGTAACGC CGTTCCGCAC CCCGGAAATG GTCAGCGAAC CAATCAGCAG GGTCATCGCT 241 AGCCAGATCC TCTACGCCGG ACGCATCGTG GCCGGCATCA CCGGCGCCAC AGGTGCGGTT 301 GCTGGCGCCT ATATCGCCGA CATCACCGAT GGGGAAGATC GGGCTCGCCA CTTCGGGCTC 361 ATGAGCGCTT GTTTCGGCGT GGGTATGGTG GCAGGCCCCG TGGCCGGGGG ACTGTTGGGC 421 GCCATCTCCT TGCATGCACC ATTCCTTGCG GCGGCGGTGC TCAACGGCCT CAACCTACTA 481 CTGGGCTGCT TCCTAATGCA GGAGTCGCAT AAGGGAGAGC GTCGATATGG TGCACTCTCA 541 GTACAATCTG CTCTGATGCC GCATAGTTAA GCCAGCCCCG ACACCCGCCA ACACCCGCTG 601 ACGCGCCCTG ACGGGCTTGT CTGCTCCCGG CATCCGCTTA CAGACAAGCT GTGACCGTCT 661 CCGGGAGCTG CATGTGTCAG AGGTTTTCAC CGTCATCACC GAAACGCGCG AGACGAAAGG 721 GCCTCGTGAT ACGCCTATTT TTATAGGTTA ATGTCATGAT AATAATGGTT TCTTAGACGT 781 CAGGTGGCAC TTTTCGGGGA AATGTGCGCG GAACCCCTAT TTGTTTATTT TTCTAAATAC 841 ATTCAAATAT GTATCCGCTC ATGAGACAAT AACCCTGATA AATGCTTCAA TAATATTGAA 901 AAAGGAAGAG TATGAGTATT CAACATTTCC GTGTCGCCCT TATTCCCTTT TTTGCGGCAT 961 TTTGCCTTCC TGTTTTTGCT CACCCAGAAA CGCTGGTGAA AGTAAAAGAT GCTGAAGATC 1021 AGTTGGGTGC ACGAGTGGGT TACATCGAAC TGGATCTCAA CAGCGGTAAG ATCCTTGAGA 1081 GTTTTCGCCC CGAAGAACGT TTTCCAATGA TGAGCACTTT TAAAGTTCTG CTATGTGGCG 1141 CGGTATTATC CCGTATTGAC GCCGGGCAAG AGCAACTCGG TCGCCGCATA CACTATTCTC 1201 AGAATGACTT GGTTGAGTAC TCACCAGTCA CAGAAAAGCA TCTTACGGAT GGCATGACAG 1261 TAAGAGAATT ATGCAGTGCT GCCATAACCA TGAGTGATAA CACTGCGGCC AACTTACTTC 1321 TGACAACGAT CGGAGGACCG AAGGAGCTAA CCGCTTTTTT GCACAACATG GGGGATCATG 1381 TAACTCGCCT TGATCGTTGG GAACCGGAGC TGAATGAAGC CATACCAAAC GACGAGCGTG 1441 ACACCACGAT GCCTGTAGCA ATGGCAACAA CGTTGCGCAA ACTATTAACT GGCGAACTAC 1501 TTACTCTAGC TTCCCGGCAA CAATTAATAG ACTGGATGGA GGCGGATAAA GTTGCAGGAC 1561 CACTTCTGCG CTCGGCCCTT CCGGCTGGCT GGTTTATTGC TGATAAATCT GGAGCCGGTG 1621 AGCGTGGGTC TCGCGGTATC ATTGCAGCAC TGGGGCCAGA TGGTAAGCCC TCCCGTATCG 1681 TAGTTATCTA CACGACGGGG AGTCAGGCAA CTATGGATGA ACGAAATAGA CAGATCGCTG 1741 AGATAGGTGC CTCACTGATT AAGCATTGGT AACTGTCAGA CCAAGTTTAC TCATATATAC 1801 TTTAGATTGA TTTAAAACTT CATTTTTAAT TTAAAAGGAT CTAGGTGAAG ATCCTTTTTG 1861 ATAATCTCAT GACCAAAATC CCTTAACGTG AGTTTTCGTT CCACTGAGCG TCAGACCCCG 1921 TAGAAAAGAT CAAAGGATCT TCTTGAGATC CTTTTTTTCT GCGCGTAATC TGCTGCTTGC 1981 AAACAAAAAA ACCACCGCTA CCAGCGGTGG TTTGTTTGCC GGATCAAGAG CTACCAACTC 2041 TTTTTCCGAA GGTAACTGGC TTCAGCAGAG CGCAGATACC AAATACTGTC CTTCTAGTGT 2101 AGCCGTAGTT AGGCCACCAC TTCAAGAACT CTGTAGCACC GCCTACATAC CTCGCTCTGC 2161 TAATCCTGTT ACCAGTGGCT GCTGCCAGTG GCGATAAGTC GTGTCTTACC GGGTTGGACT 2221 CAAGACGATA GTTACCGGAT AAGGCGCAGC GGTCGGGCTG AACGGGGGGT TCGTGCACAC 2281 AGCCCAGCTT GGAGCGAACG ACCTACACCG AACTGAGATA CCTACAGCGT GAGCTATGAG 2341 AAAGCGCCAC GCTTCCCGAA GGGAGAAAGG CGGACAGGTA TCCGGTAAGC GGCAGGGTCG 2401 GAACAGGAGA GCGCACGAGG GAGCTTCCAG GGGGAAACGC CTGGTATCTT TATAGTCCTG 2461 TCGGGTTTCG CCACCTCTGA CTTGAGCGTC GATTTTTGTG ATGCTCGTCA GGGGGGCGGA 2521 GCCTATGGAA AAACGCCAGC AACGCGGCCT TTTTACGGTT CCTGGCCTTT TGCTGGCCTT 2581 TTGCTCACAT GTTCTTTCCT GCGTTATCCC CTGATTCTGT GGATAACCGT ATTACCGCCT 2641 TTGAGTGAGC TGATACCGCT CGCCGCAGCC GAACGACCGA GCGCAGCGAG TCAGTGAGCG 2701 AGGAAGCGGA AGAGCGCCCA ATACGCAAAC CGCCTCTCCC CGCGCGTTGG CCGATTCATT 2761 AATGCAGCTG GCTTATCGAA ATTAATACGA CTCACTATAG GGAGACCCAA GCTTGGGCAA 2821 ACGTTATTTT ACCGGAGATG GCTACTCGTC GCGCTGCTAT TCCCCGTGAA GCGGATAATA 2881 TCCTTGGGGG TGCAATGCGA TCCAAAGTTC AAATGAATAG CAGACGAGCT GCTTTGGGAG 2941 AGATTGGCAA CAAAGTGACT GTGCGAGGAA AACCACCTGC AGTAAAGCAG TCTTCCAATG 3001 CTGTGGCAAA GCCTTCAAAG ATGGCAGCAA CTAAAGTGGC AAATGTTAAG ACTAAGCATG 3061 TACCTGTGAA ACCAGTTGTA GCTGAAGCTG CCCCCAAAGT GCCTTCCCCT GTGCCGATGG 3121 ATGTGTCCTT GAAAGAGGAA GAGCTGTGCC AGGCATTCTC CGATGCACTG ACCAGTGTTG 3181 AAGACATTGA TGCAGATGAT GGTGGAAACC CTCAATTGTG CAGTGACTAT GTGATGGACA 3241 TCTATAACTA CCTTAAGCAA CTGGAAGTTC AACAGTCTGT ACATCCTTGC TATCTTGAAG 3301 GAAAAGAAAT TAATGAGCGT ATGAGAGCTA TCCTAGTTGA CTGGCTTGTT CAAGTGCATT 3361 CTAGGTTTCA GCTTCTTCAG GAGACTTTAT ACATGGGCGT TGCAATCATG GATCGCTTCT 3421 TACAAGTTCA GCCAGTCTCC CGCAGTAAGC TTCAGTTGGT TGGTGTTACT TCCCTACTAA 3481 TTGCTTCAAA ATATGAAGAG ATGTACACTC CAGAGGTTGC AGACTTTGTT TATATCACCG 3541 ATAATGCCTA TACTGCATCT CAGATCAGAG AAATGGAAAT GATTATCCTT CGACTCCTCA 3601 ACTTTGACCT TGGACGGCCA TTACCTCTCC ACTTCCTCAG ACGGGCTTCA AAATCTTGCA 3661 GTGCTGATGC AGAGCAACAT ACCCTTGCAA AATATTTGAT GGAGCTTACA CTCATAGACT 3721 ATGAAATGGT CCACATCAAG CCTTCAGAAA TTGCAGCTGC TGCCCTCTGC CTATCTCAAA 3781 AAATTCTTGG CCAGGGAACC TGGGGTACCA CTCAGCACTA TTACACAGGC TACACAGAAG 3841 GTGACTTGCA ACTGATCATG AAGCATATGG CTAAGAACAT AACCAAAGTC AACCAGAATC 3901 TAACAAAGCA TGTGGCTGTG AGGAACAAGT ATGCTAGCAG TAAACTGATG AAGATCAGCA 3961 CCCTTCCTCA GCTTATGGCT CCTCTAATCA CAGAGCTTGC TGCAAGTCTC TCTTAGAACT 4021 GTTAAGTGAC CCTTTCAAAG AGAACCACTA ATTGCACTTT TAACGTTGCT GCTGGCAAAT 4081 GCTGCTGTTC CTGTAAATAT GTTTGTATTT TTATTGACTC ATTTGTGAAC TTTGAGTAAT 4141 CAATGCTGTA ATGTCAGTAT GAAATAAAAC TTCACATTTT TTATTTGGTC GACGAGGTTA 4201 GCTCTTTCTC GTATACGATA TTGGATACAC TAAATTTCGA TTTGGTCTAG GGCACCCCTC 4261 CAGCGACGGC CGAAATGGGC TAGCCATGCC CATAGTAGGA CTAGCAAACG GAGGGACTAG 4321 CCGTAGTGGC GAGCTCCCTG GGTGGTCTAA CAGTCGTCAG TAGTTCGACG TGAGCACTAG 4381 CCCACCTCGA GATGCTACGT GGACGAGGGC ATGCCCAAGA CACACCTTAA CCCTGGCGGG 4441 GGTCGCTAGG GTGAAATCAC ATTATGTGAT GGGGGTACGA CCTGATAGGG TGCTGCAGAG 4501 GCCCACTAGC AGGCTAGTAT AAAAATCTCT GCTGTACATG GCACATGGAG TTGAATCATT 4561 TTGAATTATT ATACAAAACA AGCAAACAAA AACCAGTGGG AGTGGAGGAA CCGGGTACCA 4621 TGGATCCCAG CTTTCAGGTA GATTGCTTTC TTTGGCATGT CCGCAAACGA GTTGCAGACC 4681 AAGAACTAGG TGATGCCCCA TTCCTTGATC GGCTTCGCCG AGATCAGAAA TCCCTAAGAG 4741 GAAGGGGCAG CACCCTCGGT CTGGACATCG AGACAGCCAC ACGTGCTGGA AAGCAGATAG 4801 TGGAGCGGAT TCTGAAAGAA GAATCCGATG AGGCACTTAA AATGACCATG GCCTCTGTAC 4861 CTGCGTCGCG TTACCTAACT GACATGACTC TTGAGGAAAT GTCAAGGGAC TGGTCCATGC 4921 TCATACCCAA GCAGAAAGTG GCAGGCCCTC TTTGTATCAG AATGGACCAG GCGATCATGG 4981 ATAAGAACAT CATACTGAAA GCGAACTTCA GTGTGATTTT TGACCGGCTG GAGACTCTAA 5041 TATTGCTAAG GGCTTTCACC GAAGAGGGAG CAATTGTTGG CGAAATTTCA CCATTGCCTT 5101 CTCTTCCAGG ACATACTGCT GAGGATGTCA AAAATGCAGT TGGAGTCCTC ATCGGGGGAC 5161 TTGAATGGAA TGATAACACA GTTCGAGTCT CTGAAACTCT ACAGAGATTC GCTTGGAGAA 5221 GCAGTAATGA GAATGGGAGA CCTCCACTCA CTCCAAAACA GAAACGAGAA ATGGCGGGAA 5281 CAATTAGGTC AGAAGTTTGA AGAAATAAGA TGGTTGATTG AAGAAGTGAG ACACAAACTG 5341 AAGATAACAG AGAATAGTTT TGAGCAAATA ACATTTATGC AAGCCTTACA TCTATTGCTT 5401 GAAGTGGAGC AAGAGATAAG AACTTTCTCG TTTCAGCTTA TTTAATAATA AAAAACACCC 5461 TTGTTTCTAC TGGAATTCCG TGTATTC //