IRESite_Id:626 summary record describing characteristics of TRV

IRESite: The database of experimentally verified IRES structures

The nucleic acid data:

IRESite Id: `626`	Version: `0`
Originaly submitted by: Martin Mokrejš	Submission date: `2009-08-29 21:23:54`
Reviewed by: Martin Mokrejš

IRESite record type:

natural_transcript

The shape of the nucleic acid molecule translated: `linear`	The quality of the mRNA/+RNA sequence: `both_UTRs_incomplete`
The abbreviated name of the virus/gene coding for this mRNA/+RNA molecule: `TrV`	The genetic origin of this natural mRNA/+RNA: `viral`

The GenBankId GI:# number of exactly this mRNA/+RNA sequence:
6003484

The mRNA/+RNA description:

Triatoma virus nonstructural protein precursor and capsid protein precursor, genes, partial cds.

The mRNA/+RNA sequence represented in the +DNA notation:

CAAAATTGCG TGCGAGAAAG CACGCAAATC AAAGTCTAGT GCGTAATTCA CTCACTACCG GCGTAATTTG TGGTTATGCT ATTGCGTTGA GAGTGTTGTG 
^1         ^11        ^21        ^31        ^41        ^51        ^61        ^71        ^81        ^91        

GGCGTAGTAC GGGGGCTTTT GGTTTGTGTG TGATTAATAT GCATTCCCAG TTTTGTTTAG TTTTAGATTA CTGATTTATT TTTCGAACTA CCCGAATTTA 
^101       ^111       ^121       ^131       ^141       ^151       ^161       ^171       ^181       ^191       

TTTAGGCTCT TCGAGAAATA ATGATGAACT GTCCTCAACA AGTATGAAAA GCAATTATTT GTGAAGTTAC TTGTTGTTGT AAGATTATTG ACCTCTTAGA 
^201       ^211       ^221       ^231       ^241       ^251       ^261       ^271       ^281       ^291       

TTTTTCTAAG TTGTAATGCT TTGTTTTCTG ATTGACTAGA TTATGAATCC AATTAAAAGG AGTAGTGGTC TAATATAGTC TGTGTGACCT GCAGGCATTT 
^301       ^311       ^321       ^331       ^341       ^351       ^361       ^371       ^381       ^391       

TGTGAAAAGG GTAAAGTATG AAAGCTACTC TCAGAAAAGT ACTTATGTAT TGATGAGAGC CTTAAAATGA CTTTATATTC ACAAAACTGC TGGAAGACAA 
^401       ^411       ^421       ^431       ^441       ^451       ^461       ^471       ^481       ^491       

TGATCTGGGG TATCACATTC CCTCTTAGGT TAAGTTTCGC ACTACTAGGA ATTTTTGCGA AAATTCTTAA TTCCATTCTT ATGGTGTAGT GTTTGTTCTT 
^501       ^511       ^521       ^531       ^541       ^551       ^561       ^571       ^581       ^591       

TTCAATTGGG GCGTATCTCT CTTTCGCAGA GACCCTGGCC CAACCCTGAA ATGAATAAAA TTTTACAAAA ATTCATCGAA AATCGACCTT CTAGTCCACT 
^601       ^611       ^621       ^631       ^641       ^651       ^661       ^671       ^681       ^691       

TTCTATTTTA GTTAGTGAAC TGGAAGTGAA GTTTCCGGTC TTTTTGATTC GTCAGTACAA TTTTGCACTT GATGATGATA AAGACCATTG GTTAATGACA 
^701       ^711       ^721       ^731       ^741       ^751       ^761       ^771       ^781       ^791       

TCTCGCCAGA ATACCGGAAC TATTTTGGAT TATGGATATA ATTTTGGATT TTATAAGGTG CCTTTTTCTG AAATGATGTA CTGTTCTTGC TTAAATTGCG 
^801       ^811       ^821       ^831       ^841       ^851       ^861       ^871       ^881       ^891       

AGAAGACAGA ATATGATTCG GAAAGAGTAT ATTATGAAAA TATTGGAGAA ATGTTTGATA TTGACCCGGC TTGTATAAAT GGACTTGTTA TTGATCGTTA 
^901       ^911       ^921       ^931       ^941       ^951       ^961       ^971       ^981       ^991       

TGAAAGATTG AGAGGATATC CATGGGAAAG TGATAAAATT AGTTATACTA ATTCTTTGCT TGATCTATGT TTATTTTCTT CTCTTTCTGA GCGATCTTTA 
^1001      ^1011      ^1021      ^1031      ^1041      ^1051      ^1061      ^1071      ^1081      ^1091      

CAACAAATGT TTAGAGAACC AAGAATCTCA TTTGAACAAT TCTCTGAACT TACTTTGAAT CTCGGAATAT TAAAGCCTTT TTGTAGATTT TATAGTTCGT 
^1101      ^1111      ^1121      ^1131      ^1141      ^1151      ^1161      ^1171      ^1181      ^1191      

ATTATTTTAA TTATGAGCCT TATATGAATA GACTTAAAGT TTTAAATCCT ACGATGCCTA AATTATGTAC AAATTTGGCA AAGTGTTCAA AGAGAATCTC 
^1201      ^1211      ^1221      ^1231      ^1241      ^1251      ^1261      ^1271      ^1281      ^1291      

AGATAGATGG TCTTGTGTGA ATAGCACTAT TCTATGTCAG TGCCGTGAGG ATACTGTTAC ATTGCACAAA GATCTTATTC CGTTGAATCT CAATTTTGAT 
^1301      ^1311      ^1321      ^1331      ^1341      ^1351      ^1361      ^1371      ^1381      ^1391      

CTGAAAGAAA TTTTGGCTCA GTCAGGGGAT CAGGAAGTTC CCTCAACTGA TGTAAGTATA AACTTCCAAC AAAGATCTGA TGGAACCTAT GTTAACTTTA 
^1401      ^1411      ^1421      ^1431      ^1441      ^1451      ^1461      ^1471      ^1481      ^1491      

AGAATCAATA TAGTGGAGAA TCTTTTTCTC AAAGAATTCC CTCCACAGTT GAGGCTTTTT GTTTACAACA TAGTGATCTA TTATCTCGAA TCTCGGAAAT 
^1501      ^1511      ^1521      ^1531      ^1541      ^1551      ^1561      ^1571      ^1581      ^1591      

GTCTCCTAGT GAATTTAAAA AGCTAGTAGA CAGATATAAA TCTCGAAATG GAGAACAAAT TGTTCCTGAA TCTCAAGCTG CATTTTCTTT GGTTGAATTT 
^1601      ^1611      ^1621      ^1631      ^1641      ^1651      ^1661      ^1671      ^1681      ^1691      

AATTTACCAA GTTTGCAACC TTTAATTGAC CAATTATGTT CTCTTATTTC AAGTTCTATT AGTGATCTGT TTTCAATGGG AAAAGTTCTG ATTCAAGCTA 
^1701      ^1711      ^1721      ^1731      ^1741      ^1751      ^1761      ^1771      ^1781      ^1791      

TCGTTATTTG TGTTAGTGTT TTATCTGCAG TTTTAGCATA TAATTACTTA CCATTTAAGG CTGTTTCAGG ATTTTGCCTA TTAATTTGTT CTCTATATTT 
^1801      ^1811      ^1821      ^1831      ^1841      ^1851      ^1861      ^1871      ^1881      ^1891      

CGCAGAAGAT GTTTTGTGTT ATATGAGAGA AATACTAGAT CTTTATATTA CACCTCAAGC TCAATCTGGA GGTATTGAAT CTCTTTGGTT TTGTACAAAT 
^1901      ^1911      ^1921      ^1931      ^1941      ^1951      ^1961      ^1971      ^1981      ^1991      

GTTTTTAATG CTCTTTTATT TAGAAATTTT AAGCTTAAAA GTCTTAGCGA ATTTGCTCGC TTTATTGCAA TTGTTCCTAG AGCTATTCAG GGAATTGATT 
^2001      ^2011      ^2021      ^2031      ^2041      ^2051      ^2061      ^2071      ^2081      ^2091      

GTATAGGCGA GTTGATTAGC AAAGCTTTTG AGTTCGCAAG AATCTCTTTT TATAAATATG TTTTAAAATC TGATGTACCT ATAACTCAAG AATCTCCAGT 
^2101      ^2111      ^2121      ^2131      ^2141      ^2151      ^2161      ^2171      ^2181      ^2191      

AACTAAGTGG TCTGGTGAAG TACAAAAATA TTACATGAAA TATTTGGAAT CTCAACTTGT ATATGATGAA ATTAATTTCA ATTTATTAGG ATCATTGTAT 
^2201      ^2211      ^2221      ^2231      ^2241      ^2251      ^2261      ^2271      ^2281      ^2291      

CAAGAAGGTA TTGTAATGTT AAATAGTCAT ATTTTTGTAA CAGCTAGACC ATTAATCTCA AGATTACTTG CTATTATTTC TTCAATTTTG ATGGAATTTA 
^2301      ^2311      ^2321      ^2331      ^2341      ^2351      ^2361      ^2371      ^2381      ^2391      

AGAATAGAGG GTTTTCTGAG TCTACCATTC GTAATCCTCC AGTTACTATT TATATTTCTG GAGATACGGG TGTGGGCAAA AGTACACTAT CTTATCCTTT 
^2401      ^2411      ^2421      ^2431      ^2441      ^2451      ^2461      ^2471      ^2481      ^2491      

ATCTGCCGAT ATTATAAAGA AAATAGCAGG TGATACAACT CATGATCTGA AAAATAATTG GAAGAAATTG ATCTATACCC GAAATTCTGA GCAAGAATTT 
^2501      ^2511      ^2521      ^2531      ^2541      ^2551      ^2561      ^2571      ^2581      ^2591      

TGGGATGGTT ACACTGGACA GTTGTGTTGT GTTTTTGATG ATTTTGGCCA GCGAATTGAT ACTTCAAGCA ATCCTAATTT AGAATTGTTC GAAATTATTA 
^2601      ^2611      ^2621      ^2631      ^2641      ^2651      ^2661      ^2671      ^2681      ^2691      

GAGCCGCAAA TATGTATCCT TATCCCTTAC ATATGGCGGA ATTGTCACAA AAACAGAATA CTTTCTTTTC TAGTAAAGTA ATCATGTGTA GTACAAATGT 
^2701      ^2711      ^2721      ^2731      ^2741      ^2751      ^2761      ^2771      ^2781      ^2791      

TCGTTTAGAG GATATTAAAA CAGAATCTCT TAATTTTCCT ATTGCTCTTA AAAGAAGATT TGATATCAAT GTTCGAGTTT CTTTGAAACC TGAAATTGAT 
^2801      ^2811      ^2821      ^2831      ^2841      ^2851      ^2861      ^2871      ^2881      ^2891      

AAAGAATCTC TTTGGAAGAG TGAAAGATTT GATCCTTCTA TATATTGCTT CACTGAAGTT GATTATAATG GAAGTATAGT AGGAGCTTTA TCTTATAAGG 
^2901      ^2911      ^2921      ^2931      ^2941      ^2951      ^2961      ^2971      ^2981      ^2991      

AATTGGTTAA CAGAATCTGT TCTTTATATT CTCGAAGATC TGCTTTTGTA CAATCTATAG ATAGTTTCGT TACTAGTCGT TTTGAAGACT TGGAAAATGA 
^3001      ^3011      ^3021      ^3031      ^3041      ^3051      ^3061      ^3071      ^3081      ^3091      

AGAAGTGGTA GCACAGGTAG GGTATTTACC TGGCGATGAT TCAAAATCAA AAGTTAGGTA CCTATCTGTT GCAATTCCTT CTTTAATAGA ATCTCATGTT 
^3101      ^3111      ^3121      ^3131      ^3141      ^3151      ^3161      ^3171      ^3181      ^3191      

TCCGACTGGA ATAAAAGATG GAATAATCTC ATAGAGAAAT ACCCATTTCT CCCTTCTATG AAAGTTATAG GGGGAGTTAT GGGGCTTCTG GCTGTTGGGT 
^3201      ^3211      ^3221      ^3231      ^3241      ^3251      ^3261      ^3271      ^3281      ^3291      

TAGGAATCTC TACTATGTTC TGGAAGAAAA CAGAAAAGAA AGAATCTCAT GTTGTTTCGT TTTCTGAGTC TTGTGAAAAA GTGGAACAAC GACCTGTGGT 
^3301      ^3311      ^3321      ^3331      ^3341      ^3351      ^3361      ^3371      ^3381      ^3391      

AAAATGTGAA TCTTGTGAAA AGGATACACA AAGACCCACA GTACGTTGTG AAACTTCTAC ATTAGATATG AAAGTTGATA ACCAACCTTG TGATGAATTT 
^3401      ^3411      ^3421      ^3431      ^3441      ^3451      ^3461      ^3471      ^3481      ^3491      

CTTACAAAAT CTCAAGGAGT TTTAGATCTG AATGCATCAG AAGTTTTAGG AAAAATAACG AAGAAGAATC TCTATGCGAT GTATATGCCT GGTGTTAGGT 
^3501      ^3511      ^3521      ^3531      ^3541      ^3551      ^3561      ^3571      ^3581      ^3591      

TGGGACATGC TCTTTTTATT AAAGGGTGTG TTGCAGCCTT TCCCACGCAT TTTATAGCTG CAATGAAGTT AAGAATCTCT AAAAATCCTG AAGCTGAAGT 
^3601      ^3611      ^3621      ^3631      ^3641      ^3651      ^3661      ^3671      ^3681      ^3691      

TTGTTTTAAA TCTCCATTTG TTAATCGTCC TGTTTGGAAG ATGTTAGCTA AAGATCTGAT TAATTTAAGC AAACCTTTTT CCTATAAAAC AAATTTACCT 
^3701      ^3711      ^3721      ^3731      ^3741      ^3751      ^3761      ^3771      ^3781      ^3791      

TGTGATCTTA CATTAGCACC TATTAGGGTA GCATGGTCTC ATAATGATAT TACCGACCTA TTTGTTTCGG CAAGTGAGGT TAGTAGAGTT ATAGAATCTC 
^3801      ^3811      ^3821      ^3831      ^3841      ^3851      ^3861      ^3871      ^3881      ^3891      

CTGCTGTGTT ACCTCTAATT ATGTGTGATA ATGGAAAGGA TCCTGGATTT GGTGTAATAA AATTCACTAG TGCAGGATCT AGATTACAAG AGAAGACTGA 
^3901      ^3911      ^3921      ^3931      ^3941      ^3951      ^3961      ^3971      ^3981      ^3991      

TTTAATTTAT AAGGGACCTG ATTCTCAAAA TATATACTTA AGATCTGCAT GGGAGTATTC ACTTGATACT CAATCTGGTG ATTGTGGTGC TCCTTTAATT 
^4001      ^4011      ^4021      ^4031      ^4041      ^4051      ^4061      ^4071      ^4081      ^4091      

TTAAGAAACC CTATGTGTAG AGGAAAGATC TGTGGAATAC ATGTAGCTGG TCTACCAACT GGTGGACTCG GCTATGCTGT TCCAATTACA AAGGAATTTA 
^4101      ^4111      ^4121      ^4131      ^4141      ^4151      ^4161      ^4171      ^4181      ^4191      

TTCTTGATTG TTTAAGTTCC TTTGCAAAAC ATGATCTGAC CACTATATGC AATGTACCTG AAATATCTCA ATCTGGAGGA GTTAGTCAAC TACCTCTCAA 
^4201      ^4211      ^4221      ^4231      ^4241      ^4251      ^4261      ^4271      ^4281      ^4291      

TGAACCAATA ACTTGGAATG ATAATTTATC TATTCCTGGT GAATTTGGTT TAGTTGGGAA GGCAAGAGCT ATTCCTTCAC CTAGCAAATC TCAAATTACT 
^4301      ^4311      ^4321      ^4331      ^4341      ^4351      ^4361      ^4371      ^4381      ^4391      

GAATCTCTAT CTCATGGAGT AATAGCCCCG GTAAGAACTA GGACTACGCT CCTTTCTCCA ATAAAGACTG ATTCTGGGCC TTGGAATCCT ATGCATGAGC 
^4401      ^4411      ^4421      ^4431      ^4441      ^4451      ^4461      ^4471      ^4481      ^4491      

GTATGCGAAA GTATGGGAGA CCATTGACTG CTTTGGATGA AGAGTTAGTT TCTACTTGTG GGGCTGCTCT TCTAAATGAC CTTCGCTCTA CTTTGGCTCG 
^4501      ^4511      ^4521      ^4531      ^4541      ^4551      ^4561      ^4571      ^4581      ^4591      

TCGCAAGATT GATTATACAA ATATTCGGTC TTGTTACGAT TTTCAGACGG CTATGAGTGG TATTGATGGG GATGAAACTA TCAATTCTAT AAAACGTAAA 
^4601      ^4611      ^4621      ^4631      ^4641      ^4651      ^4661      ^4671      ^4681      ^4691      

TCTTCGCCAG GTTTCCCTTG GGTTTTTAAA ACTTCTAGTG GAACTGGTAA GAAACAGATT TTTGGAAATG ATGGTGAATT CCTATTTGAT ACTCCTTTGG 
^4701      ^4711      ^4721      ^4731      ^4741      ^4751      ^4761      ^4771      ^4781      ^4791      

CTGTGGAATT AGAAGAAAAA GTTAAGGAGG TGATAGATCT TGCGAAGCAA GGCGTGAGGT ATTCTCATGT TTTTGTTGAT GCATTAAAAG ATGAAAGGAA 
^4801      ^4811      ^4821      ^4831      ^4841      ^4851      ^4861      ^4871      ^4881      ^4891      

ACCGAGAGAG AAAGCTCATA AAACAAGAGC TTTTTCAGGA TGTCCTTTGG AGTACCTTGC GGTATGTAAG ATGTATTTTC AGGGTATCGT CTCGGTATTG 
^4901      ^4911      ^4921      ^4931      ^4941      ^4951      ^4961      ^4971      ^4981      ^4991      

ACCAAATGCA AAAACGAAAC GCATATTAGT GTAGGAACTA ATGTGTATAG TAAAGATTGG GATTTTATGG CTAGATATCT TAAATCCAAG TCTGATGGTT 
^5001      ^5011      ^5021      ^5031      ^5041      ^5051      ^5061      ^5071      ^5081      ^5091      

TTGTAGCAGG TGATTTTGAG GGATTTGATT CCTCTCAATT GGTGCCTATA CTACGAGAAA TTGGAAATGT TTTTAATGGT ATTGCCAGGC AATTTCCCGA 
^5101      ^5111      ^5121      ^5131      ^5141      ^5151      ^5161      ^5171      ^5181      ^5191      

TTGGAAGCCA GAAGATGATG AAGTCAGATT AGTTTTACTT CAAAGTTTAT GGCATTCTAT TCACATTAAT GGTGGAGATG TTGTAATGTG GGGTCATGCA 
^5201      ^5211      ^5221      ^5231      ^5241      ^5251      ^5261      ^5271      ^5281      ^5291      

TTGCCTTCTG GGCATTATTT GACCGCTCCT TATAACTCTC TTTATGCTAC TATGCTTTTC TCAATGGCCT TTGTTATTTT GTCTCGCAGG AACGGTACAA 
^5301      ^5311      ^5321      ^5331      ^5341      ^5351      ^5361      ^5371      ^5381      ^5391      

GAATGGGCCC TTCTATGCTT GCATCTAAAT TCTTTAAAGA ATTTGGTTTT GTGGCATATG GAGATGACCA TATTTGTGCC GTTCCGAAAC GTTATCAATC 
^5401      ^5411      ^5421      ^5431      ^5441      ^5451      ^5461      ^5471      ^5481      ^5491      

CTTTTTCAAT CAAATGACTT TGGAAAAAGT ATTTCTTGAA TTAGGAATTG GTTACACAAC AGAGGATAAG CGTGAGATTG ATGTCCCAAT TCGTTCTTTA 
^5501      ^5511      ^5521      ^5531      ^5541      ^5551      ^5561      ^5571      ^5581      ^5591      

GATGAAATTG CTTATTTAAA AAGAAGTTTC GTTTTAGACG AAGAAAGACA ACAATGGATC GCTCCTCTGA CCCTGGATAC TGTATTGGAA ACGCCAAGTT 
^5601      ^5611      ^5621      ^5631      ^5641      ^5651      ^5661      ^5671      ^5681      ^5691      

GGATTCATCG TTGTGATGAT CCGATAGAAG CAACTGTTTC TAATATAGAA TTCGCATTAC GTGAGTTGTC TCTCCATTCG AAACAAGAGT GGGAGAAGTA 
^5701      ^5711      ^5721      ^5731      ^5741      ^5751      ^5761      ^5771      ^5781      ^5791      

TGCTCCTGTA ATGTTAAGTG AAGTAACGAG ATTGGGTAGG ACTACTATAT TTCATGATTG GGCAGATACT AGGGCTTTTG TACTAGATGA TCTGTCTCCA 
^5801      ^5811      ^5821      ^5831      ^5841      ^5851      ^5861      ^5871      ^5881      ^5891      

GATGAGATAT GGAATCCTAC GGACTTGACT ATGTGATCTT GCTTTCGTAA TAAAATTCTG TACATAAAAG TCGAAAGTAT TGCTATAGTT AAGGTTGCGC 
^5901      ^5911      ^5921      ^5931      ^5941      ^5951      ^5961      ^5971      ^5981      ^5991      

TTGCCTATTT AGGCATACTT CTCAGGATGG CGCGTTGCAG TCCAACAAGA TCCAGGGACT GTACAGAATT TTCCTATACC TCGAGTCGGG TTTGGAATCT 
^6001      ^6011      ^6021      ^6031      ^6041      ^6051      ^6061      ^6071      ^6081      ^6091      

AAGGTTGACT CGCTGTAAAT AATGTAAATA TGAAACAAAT GAATGTAAAT TCTTCTCAGG ATACTACATT TGAACAAAGA TCTCAAGAGA AGGTGCAAGC 
^6101      ^6111      ^6121      ^6131      ^6141      ^6151      ^6161      ^6171      ^6181      ^6191      

TGGAGAAATT AATGAGAGTA TTGAGTTTCG AAATCAGATT ACTACTTTTG TACATGATAA TCCGATAATC ACTGAGCAAC TAATTGGAGA TAGTCCACAG 
^6201      ^6211      ^6221      ^6231      ^6241      ^6251      ^6261      ^6271      ^6281      ^6291      

CCTTCGGGTG ACGTTAGATC GGTTAGTGAT GCTCGAACTC ATTCTATTAT TGATTTCTTA GAAAGACCCC AGTTTATTGG ATCTTTTCTT TGGAACACAA 
^6301      ^6311      ^6321      ^6331      ^6341      ^6351      ^6361      ^6371      ^6381      ^6391      

GTGATATTGA AAATAAAGAA ATCTTTTCCT TGAAATTACC TGATGCACTT ATGTCACCTA TGATTAGAGA AAAATTATCT GGTTTTACAT CTTTTAGTGC 
^6401      ^6411      ^6421      ^6431      ^6441      ^6451      ^6461      ^6471      ^6481      ^6491      

TAGTACCGTC TTTCATATAC AAGTAAATGC TCATCCATTT CAATGTGGAA GATTGGTTTT AGCTGCTGTA CCTGTTCCAG ATATTTTACC TCTACATAGG 
^6501      ^6511      ^6521      ^6531      ^6541      ^6551      ^6561      ^6571      ^6581      ^6591      

TTGAACATGT TAAGTTTTGA TGTTTCTAAT GTCATAACTT TACCTCATGT GCAATTGGAT ATTAGCAAGG AAACAGAAGT CTTATTGAAG ATTCCTTATG 
^6601      ^6611      ^6621      ^6631      ^6641      ^6651      ^6661      ^6671      ^6681      ^6691      

TTTCACCCTT TGTTCAGTAT GATCTTGTTA CAAAATTTAC TCCTTGGGCT GCCTTTTTGG CACATGTGTA TGCTCCTCTT AATACTCCAT CTGCTGCTTC 
^6701      ^6711      ^6721      ^6731      ^6741      ^6751      ^6761      ^6771      ^6781      ^6791      

ATTGCAGGTT AACGTGTTTG CTCATTTTGA AGACATCAAA CTAGGCTTTC CTACTTCTGC TATTGTAGCT CAAGCAGGTA AAGAACAGTT AGGTCCTATA 
^6801      ^6811      ^6821      ^6831      ^6841      ^6851      ^6861      ^6871      ^6881      ^6891      

AGTGGTTTAA CAAACACTGT TACGGGTGTT GTTGGAGGAG TTGCAGATGC TGTCAAGGGG TTTTTCCCTT CTATTGGAAA GTATGCCGAT CCTCTGGTTG 
^6901      ^6911      ^6921      ^6931      ^6941      ^6951      ^6961      ^6971      ^6981      ^6991      

GAATTGGCAA TGGTTTGACT GGGTTATTGT CAGCTTTAGG TTTTTCCAAA CCTTTAACTA CAATCCCGCC AACTATTGTT GTTCAACGAC CCTCTCAATA 
^7001      ^7011      ^7021      ^7031      ^7041      ^7051      ^7061      ^7071      ^7081      ^7091      

TTTTAATAAT GCTGATGGTG TAGATCAAGG ACTTCCTTTG AGTCTTAAAT ATGGAAATGA GGTTATTTTG AAAACACCTT TTGCCGGAAC ATCTTCTGAT 
^7101      ^7111      ^7121      ^7131      ^7141      ^7151      ^7161      ^7171      ^7181      ^7191      

GAGGTGGCGC TGGAGTATGT TTTAAAAATA CCTAATTACT TTTCTAGATT TAAATACTCG AGTACGTCCT TACCTAAGCA AGTATTGTGG ACTTCTCCTG 
^7201      ^7211      ^7221      ^7231      ^7241      ^7251      ^7261      ^7271      ^7281      ^7291      

TTCATCCTCA AATAATACGT AATCACGTTA CAGTTGTTGA TGCTCCAGGG CAGCCTACTT TGCTAGCTTA TGCCACAGGA TTTTTCAAAT ATTGGAGAGG 
^7301      ^7311      ^7321      ^7331      ^7341      ^7351      ^7361      ^7371      ^7381      ^7391      

TGGTCTCGTT TATACGTTTA GATTTGTCAA AACTAACTAT CATTCTGGAA GAGTCCAAAT TACATTTCAT CCCTTTGTTG GGTATGATGA TGTTATGGAT 
^7401      ^7411      ^7421      ^7431      ^7441      ^7451      ^7461      ^7471      ^7481      ^7491      

TCGGATGGTA AGATAGTTAG AGATGAATAC GTCTATCGTG TAGTCGTAGA CCTTCGTGAC CAGACTGAGG CTACTTTAGT AGTCCCTTTT ACCTCCCTTA 
^7501      ^7511      ^7521      ^7531      ^7541      ^7551      ^7561      ^7571      ^7581      ^7591      

CTCCTTATAA AGTGTGTGCG GATGTGTTTA ATTCAGCAAA TCGTCCTAAA TACAACTATG AACCTAGAGA CTTTAAGGTT TATGATAATA CTACAGATCA 
^7601      ^7611      ^7621      ^7631      ^7641      ^7651      ^7661      ^7671      ^7681      ^7691      

GTTCTTTACA GGAACACTTT GTGTTTCTGC TTTAACTCCT CTGGTTAGTA GTTCTGCCGT AGTCTCTTCG ACTATAGATG TTTTAGTTGA GGTTAAAGCC 
^7701      ^7711      ^7721      ^7731      ^7741      ^7751      ^7761      ^7771      ^7781      ^7791      

TCAGATGATT TTGAAGTTGC TGTCCCAAAC ACGCCTTTAT GGTTACCCGT AGATTCTTTG ACAGAGAGGC CTTCATTAGA TGGTGTTCCT ATTGCACAAG 
^7801      ^7811      ^7821      ^7831      ^7841      ^7851      ^7861      ^7871      ^7881      ^7891      

TAGGTTTTGC TTCAGCAGGT ACTCGTGATA TCCGTTCTTC TTATGTTGAG GGGAAATTTA TTCCTCAGGA TATAACTGGA ATGTCTAGAA ATCATGAACT 
^7901      ^7911      ^7921      ^7931      ^7941      ^7951      ^7961      ^7971      ^7981      ^7991      

TGATGAACAG CCTTCTCAAG AATGTATTGG TGAAAGAATC TTATCTTTTT CTGAATTGAT TAAGAGAAAT TCTTGGCGAT ACGTTTCTGA CGAGAAGAGT 
^8001      ^8011      ^8021      ^8031      ^8041      ^8051      ^8061      ^8071      ^8081      ^8091      

TTGATTTATC CAGCTTATGC CTTTGACAAT CCTGCCGCTA TGTATACTGC TGCTGACAAA CTACCTGTTT GGACACTAAC TCCTAGATCG GGTTTTCCCA 
^8101      ^8111      ^8121      ^8131      ^8141      ^8151      ^8161      ^8171      ^8181      ^8191      

CTCTGTTGAC ATCTATTGGT GCTATGTACG CATTTTATAG GGGGGGAATA AGGCTGAAGA TTGTTCCCGG TGTTGCCGAT CAACCTAAAC CTCTGGTAGA 
^8201      ^8211      ^8221      ^8231      ^8241      ^8251      ^8261      ^8271      ^8281      ^8291      

AGTGGCTTTG TTTACTATGC AGGATCAAGG CTATATCATT AAAGCTAATG ATTATAGCAC TGATTTCTGC TCGTCGAATA TATATGAAAA TTTTGTTACT 
^8301      ^8311      ^8321      ^8331      ^8341      ^8351      ^8361      ^8371      ^8381      ^8391      

AAAGGAATAG CAGAGGTACA AACTCCTTAT TATTCAAGGG TTAATACCTC TGTTGTTTCT GCTCCTGTTC TTTATAACGC AGGTAATATT TCTCCACTAA 
^8401      ^8411      ^8421      ^8431      ^8441      ^8451      ^8461      ^8471      ^8481      ^8491      

TGCCGAATGT TATGTATAAG ATAACATCAA ATTCATCAAA CATTCTGCTT GGTCATTCTG CTGCTGATGA TTTCCGTTTT GGATTTCTCT TGGGAGCTCC 
^8501      ^8511      ^8521      ^8531      ^8541      ^8551      ^8561      ^8571      ^8581      ^8591      

ATTAGCTATT TCAGCTACGG CTCTTAGAGA TAACTTTACG GGATCCTCTG CTACAGTTTC TCTTCCTACC TTCTCAAATT TTTATCTATC TTCGACTTCA 
^8601      ^8611      ^8621      ^8631      ^8641      ^8651      ^8661      ^8671      ^8681      ^8691      

GAGTCCACTA CTTAGAGGCT AGTGGTTGTT CGTACATTGG GTCAAGACTC AGTCTTGTTT TTCCGTATGT AAATATAAAT ATACATTCAT TTATTGTAAA 
^8701      ^8711      ^8721      ^8731      ^8741      ^8751      ^8761      ^8771      ^8781      ^8791      

TAATTATATA TATATAATTT TGTTTGTTTG TAAATAATGT GCTTTTATAT GTTTGTGTCT GTGTCTTTCA GGTTTCTTCT TGATTCTTCC TGAGGGTACT 
^8801      ^8811      ^8821      ^8831      ^8841      ^8851      ^8861      ^8871      ^8881      ^8891      

AATCGAATCA TGTATTTTGT TTTATTATTA TATACGTTTT TGTTCGCTTT GTCCGTTCAG TGGACCAAGT TTTGGCAATA GCTGACACTT GTTTCACAGC 
^8901      ^8911      ^8921      ^8931      ^8941      ^8951      ^8961      ^8971      ^8981      ^8991      

TTCTTTCTGC
^9001

Credibility of mRNA sequence:

unknown

The organism containing this mRNA with IRES segment in its genome:

Triatoma virus

A promoter reported in cDNA corresponding to IRES sequence:
not tested The total number of notable open-reading frames (ORFs):
2

Notable Open-Reading Frames (ORFs; protein coding regions) in the mRNA/+RNA sequence:

ORF

ORF position:

1

Version: `0`
Originaly submitted by: Martin Mokrejš	Reviewed by: Martin Mokrejš

The abbreviated name of this ORF/gene:
NS

The description of the protein encoded in this ORF:
non-structural polyprotein

The translational frameshift (ribosome slippage) involved:
0 The ribosome read-through involved:
no

The alternative forms of this protein occur by the alternative initiation of translation:

not tested

The ORF absolute position (the base range includes START and STOP codons or their equivalents):

549-5936

ORF

ORF position:

2

Version: `0`
Originaly submitted by: Martin Mokrejš	Reviewed by: Martin Mokrejš

The abbreviated name of this ORF/gene:
CP

The description of the protein encoded in this ORF:
capsid protein

The translational frameshift (ribosome slippage) involved:
0 The ribosome read-through involved:
no

The alternative forms of this protein occur by the alternative initiation of translation:

not tested

The ORF absolute position (the base range includes START and STOP codons or their equivalents):

6109-8715

Citations:

Czibener C, La Torre JL, Muscio OA, Ugalde RA, Scodeller EA (2000) Nucleotide sequence analysis of Triatoma virus shows that it is a member of a novel group of insect RNA viruses. J. Gen. Virol. 81(4):1149-1154

IRESs:

IRES:

Version: `0`
Originaly submitted by: Martin Mokrejš	Reviewed by: Martin Mokrejš
The IRES name: `TRV_5NTR`

The IRES absolute position (the range includes START and STOP codons or their equivalents):

1-694

Conclusion:
weakly_supported_IRES

How IRES boundaries were determined:
experimentally_determined

The sequence of IRES region aligned to its secondary structure (if available):

CAAAATTGCG TGCGAGAAAG CACGCAAATC AAAGTCTAGT GCGTAATTCA CTCACTACCG GCGTAATTTG TGGTTATGCT ATTGCGTTGA GAGTGTTGTG 
^1         ^11        ^21        ^31        ^41        ^51        ^61        ^71        ^81        ^91        

GGCGTAGTAC GGGGGCTTTT GGTTTGTGTG TGATTAATAT GCATTCCCAG TTTTGTTTAG TTTTAGATTA CTGATTTATT TTTCGAACTA CCCGAATTTA 
^101       ^111       ^121       ^131       ^141       ^151       ^161       ^171       ^181       ^191       

TTTAGGCTCT TCGAGAAATA ATGATGAACT GTCCTCAACA AGTATGAAAA GCAATTATTT GTGAAGTTAC TTGTTGTTGT AAGATTATTG ACCTCTTAGA 
^201       ^211       ^221       ^231       ^241       ^251       ^261       ^271       ^281       ^291       

TTTTTCTAAG TTGTAATGCT TTGTTTTCTG ATTGACTAGA TTATGAATCC AATTAAAAGG AGTAGTGGTC TAATATAGTC TGTGTGACCT GCAGGCATTT 
^301       ^311       ^321       ^331       ^341       ^351       ^361       ^371       ^381       ^391       

TGTGAAAAGG GTAAAGTATG AAAGCTACTC TCAGAAAAGT ACTTATGTAT TGATGAGAGC CTTAAAATGA CTTTATATTC ACAAAACTGC TGGAAGACAA 
^401       ^411       ^421       ^431       ^441       ^451       ^461       ^471       ^481       ^491       

TGATCTGGGG TATCACATTC CCTCTTAGGT TAAGTTTCGC ACTACTAGGA ATTTTTGCGA AAATTCTTAA TTCCATTCTT ATGGTGTAGT GTTTGTTCTT 
^501       ^511       ^521       ^531       ^541       ^551       ^561       ^571       ^581       ^591       

TTCAATTGGG GCGTATCTCT CTTTCGCAGA GACCCTGGCC CAACCCTGAA ATGAATAAAA TTTTACAAAA ATTCATCGAA AATCGACCTT CTAG
^601       ^611       ^621       ^631       ^641       ^651       ^661       ^671       ^681       ^691

Remarks:

Czibener et al. (2005) studied both the 5'-NTR IRES and IGR IRES in Xenopus oocytes, human BHK and C6/36 cells
using monocistronic and bicistronic transcripts.

Citations:

Nakashima N, Sasaki J, Toriyama S (1999) Determining the nucleotide sequence and capsid-coding region of himetobi P virus: a member of a novel group of RNA viruses that infect insects. Arch. Virol. 10(144):2051-2058

Czibener C, Alvarez D, Scodeller E, Gamarnik AV (2005) Characterization of internal ribosomal entry sites of Triatoma virus. J. Gen. Virol. 86(8):2275-2280

IRES:

Version: `1`	Last change: `2009-08-29 22:27:53`
Originaly submitted by: Martin Mokrejš	Reviewed by: Martin Mokrejš
The IRES name: `TrV_IGR`

The IRES absolute position (the range includes START and STOP codons or their equivalents):

5929-6149

Conclusion:
weakly_supported_IRES

How IRES boundaries were determined:
experimentally_determined

The sequence of IRES region aligned to its secondary structure (if available):

CTATGTGATC TTGCTTTCGT AATAAAATTC TGTACATAAA AGTCGAAAGT ATTGCTATAG TTAAGGTTGC GCTTGCCTAT TTAGGCATAC TTCTCAGGAT 
^5929      ^5939      ^5949      ^5959      ^5969      ^5979      ^5989      ^5999      ^6009      ^6019      

GGCGCGTTGC AGTCCAACAA GATCCAGGGA CTGTACAGAA TTTTCCTATA CCTCGAGTCG GGTTTGGAAT CTAAGGTTGA CTCGCTGTAA ATAATGTAAA 
^6029      ^6039      ^6049      ^6059      ^6069      ^6079      ^6089      ^6099      ^6109      ^6119      

TATGAAACAA ATGAATGTAA A
^6129      ^6139      ^6149

Remarks:

The coordinates of IRES region were taken over from Nakashima and Uchiumi (2009) from Table 1 are 5925-6111
instead.

Our coordinates are based on primer sequences described in the original publication of Czibener et
al. (2005) who studied both the 5'-NTR IRES and IGR IRES in Xenopus oocytes, human BHK and C6/36 cells
using monocistronic and bicistronic transcripts.

Citations:

Czibener C, Alvarez D, Scodeller E, Gamarnik AV (2005) Characterization of internal ribosomal entry sites of Triatoma virus. J. Gen. Virol. 86(8):2275-2280

Last change to the database: 2019-03-18 09:32:49 GMT+1