IRESite_Id:223 summary record describing characteristics of UtrA IRES

IRESite: The database of experimentally verified IRES structures

The nucleic acid data:

IRESite Id: `223`	Version: `3`
Originaly submitted by: Václav Vopálenský
Reviewed by: Martin Mokrejš	Last change: `2006-08-04 00:00:00`

IRESite record type:

natural_transcript

The shape of the nucleic acid molecule translated: `linear`	The quality of the mRNA/+RNA sequence: `our_best_guess`
The abbreviated name of the virus/gene coding for this mRNA/+RNA molecule: `Utrn`	The genetic origin of this natural mRNA/+RNA: `nuclear`

The GenBankId GI:# number of the most similar mRNA/+RNA sequence to this one.
110431377

Synonyms of the gene name:

Synonym: DRP

Synonym: Dmdl

Synonym: AA589569

The mRNA/+RNA description:

Mus musculus utrophin (Utrn), mRNA.

The mRNA/+RNA sequence represented in the +DNA notation:

TTGTGGAGTC GCCCTTCCCC CGAGGAGGGG AGCGGGCAGC GCCGGGCGCG GGATTTCTCC CGCCCAGGGC CGAGGAGGAG CCCTGGGCTC CTCAACCGAT 
^1         ^11        ^21        ^31        ^41        ^51        ^61        ^71        ^81        ^91        

CGGGCCACCT CCGGGAGCGG CGCCCCTTTT CTTTCGGGTC ATTCCTGCAG AGGGAAAACT CCTGCGTGCG CCTGCCCCCA GGCTAGCGTT TGGACTGTTT 
^101       ^111       ^121       ^131       ^141       ^151       ^161       ^171       ^181       ^191       

TGTTTTTGGC GGAACTACCG GGCAGGAAGA TTGCACAAGT CAGGGGGCGT TTCCAATCGG GTGTCAATTT TGGATCTCCC CCCCCCCACC CCCCTTTGGA 
^201       ^211       ^221       ^231       ^241       ^251       ^261       ^271       ^281       ^291       

TCTTGTCGGG CTTTCCACGT TTCACTTAAA AAAAATTCTT GTAACGTCCA AGGCAAGCTC CCCACGACCC GAACACGCCC AGAGGAACCT TGGGGCCTCT 
^301       ^311       ^321       ^331       ^341       ^351       ^361       ^371       ^381       ^391       

GGGGACTTGG CTAGCAGGTA TTCATGCTAG CCTGGACCAT TTTTCAGATT TAGCCTTCAG AAGAGGATCT GGGAAAGCCT TTGGATTATA CTGAAACTCA 
^401       ^411       ^421       ^431       ^441       ^451       ^461       ^471       ^481       ^491       

TTCAAGATGG CCAAGTATGG GGACCTTGAA GCCAGGCCTG ATGATGGGCA GAACGAATTC AGTGACATCA TTAAGTCCAG ATCTGATGAA CACAATGATG 
^501       ^511       ^521       ^531       ^541       ^551       ^561       ^571       ^581       ^591       

TACAGAAGAA AACCTTTACC AAATGGATAA ACGCTCGATT TTCCAAGAGT GGGAAACCAC CCATCAGTGA TATGTTCTCA GACCTCAAAG ATGGGAGAAA 
^601       ^611       ^621       ^631       ^641       ^651       ^661       ^671       ^681       ^691       

GCTCTTGGAT CTTCTCGAAG GCCTCACAGG AACATCATTG CCAAAGGAAC GTGGTTCCAC AAGGGTGCAT GCCTTAAACA ATGTCAACCG AGTGCTACAG 
^701       ^711       ^721       ^731       ^741       ^751       ^761       ^771       ^781       ^791       

GTTTTACATC AGAACAATGT GGACTTGGTG AATATTGGAG GCACGGACAT TGTGGATGGA AATCCCAAGC TGACTTTAGG GTTACTCTGG AGCATCATTC 
^801       ^811       ^821       ^831       ^841       ^851       ^861       ^871       ^881       ^891       

TGCACTGGCA GGTGAAGGAT GTCATGAAAG ATATCATGTC AGACCTGCAG CAGACAAACA GCGAGAAGAT CCTGCTGAGC TGGGTGCGGC AGACCACCAG 
^901       ^911       ^921       ^931       ^941       ^951       ^961       ^971       ^981       ^991       

GCCCTACAGT CAAGTCAACG TCCTCAACTT CACCACCAGC TGGACCGATG GACTCGCGTT CAACGCCGTG CTCCACCGGC ACAAACCAGA TCTCTTCAGC 
^1001      ^1011      ^1021      ^1031      ^1041      ^1051      ^1061      ^1071      ^1081      ^1091      

TGGGACAGAG TGGTCAAAAT GTCCCCAATT GAGAGACTTG AACATGCTTT TAGCAAGGCC CACACTTATT TGGGAATTGA AAAGCTTCTA GATCCTGAAG 
^1101      ^1111      ^1121      ^1131      ^1141      ^1151      ^1161      ^1171      ^1181      ^1191      

ATGTTGCTGT GCATCTCCCT GACAAGAAAT CCATAATTAT GTATTTAACG TCTCTGTTTG AGGTGCTTCC TCAGCAAGTC ACGATAGATG CCATCCGAGA 
^1201      ^1211      ^1221      ^1231      ^1241      ^1251      ^1261      ^1271      ^1281      ^1291      

GGTGGAGACT CTCCCAAGGA AGTATAAGAA AGAATGTGAA GAGGAAGAAA TTCATATCCA GAGTGCAGTG CTGGCAGAGG AAGGCCAGAG TCCCCGAGCT 
^1301      ^1311      ^1321      ^1331      ^1341      ^1351      ^1361      ^1371      ^1381      ^1391      

GAGACCCCTA GCACCGTCAC TGAAGTGGAC ATGGATTTGG ACAGCTACCA GATAGCGCTA GAGGAAGTGC TGACGTGGCT GCTGTCCGCG GAGGACACGT 
^1401      ^1411      ^1421      ^1431      ^1441      ^1451      ^1461      ^1471      ^1481      ^1491      

TCCAGGAGCA AGATGACATT TCTGATGATG TCGAAGAAGT CAAAGAGCAG TTTGCTACCC ATGAAACTTT TATGATGGAG CTGACAGCAC ACCAGAGCAG 
^1501      ^1511      ^1521      ^1531      ^1541      ^1551      ^1561      ^1571      ^1581      ^1591      

CGTGGGGAGC GTCCTGCAGG CTGGCAACCA GCTGATGACA CAAGGGACTC TGTCAGAGGA GGAGGAGTTT GAGATCCAGG AACAGATGAC CTTGCTGAAT 
^1601      ^1611      ^1621      ^1631      ^1641      ^1651      ^1661      ^1671      ^1681      ^1691      

GCAAGGTGGG AGGCGCTCCG GGTGGAGAGC ATGGAGAGGC AGTCCCGGCT GCACGACGCT CTGATGGAGC TGCAGAAGAA ACAGCTGCAG CAGCTCTCAA 
^1701      ^1711      ^1721      ^1731      ^1741      ^1751      ^1761      ^1771      ^1781      ^1791      

GCTGGCTGGC CCTCACAGAA GAGCGCATTC AGAAGATGGA GAGCCTCCCG CTGGGTGATG ACCTGCCCTC CCTGCAGAAG CTGCTTCAAG AACATAAAAG 
^1801      ^1811      ^1821      ^1831      ^1841      ^1851      ^1861      ^1871      ^1881      ^1891      

TTTGCAAAAT GACCTTGAAG CTGAACAGGT GAAGGTAAAT TCCTTAACTC ACATGGTGGT GATTGTGGAT GAAAACAGTG GGGAGAGTGC CACAGCTCTT 
^1901      ^1911      ^1921      ^1931      ^1941      ^1951      ^1961      ^1971      ^1981      ^1991      

CTGGAAGATC AGTTACAGAA ACTGGGTGAG CGCTGGACAG CTGTATGCCG CTGGACTGAA GAACGTTGGA ACAGGTTGCA AGAAATCAGT ATTCTGTGGC 
^2001      ^2011      ^2021      ^2031      ^2041      ^2051      ^2061      ^2071      ^2081      ^2091      

AGGAATTATT GGAAGAGCAG TGTCTGTTGG AGGCTTGGCT CACCGAAAAG GAAGAGGCTT TGAATAAAGT TCAAACCAGC AACTTTAAAG ACCAGAAGGA 
^2101      ^2111      ^2121      ^2131      ^2141      ^2151      ^2161      ^2171      ^2181      ^2191      

ACTAAGTGTC AGTGTCCGGC GTCTGGCTAT ATTGAAGGAA GACATGGAAA TGAAGAGGCA GACTCTGGAT CAACTGAGTG AGATTGGCCA GGATGTGGGC 
^2201      ^2211      ^2221      ^2231      ^2241      ^2251      ^2261      ^2271      ^2281      ^2291      

CAATTACTCA GTAATCCCAA GGCATCTAAG AAGATGAACA GTGACTCTGA GGAGCTAACA CAGAGATGGG ATTCTCTGGT TCAGAGACTC GAAGACTCTT 
^2301      ^2311      ^2321      ^2331      ^2341      ^2351      ^2361      ^2371      ^2381      ^2391      

CTAACCAGGT GACTCAGGCG GTAGCGAAGC TCGGCATGTC CCAGATTCCA CAGAAGGACC TATTGGAGAC CGTTCATGTG AGAGAACAAG GGATGGTGAA 
^2401      ^2411      ^2421      ^2431      ^2441      ^2451      ^2461      ^2471      ^2481      ^2491      

GAAGCCCAAG CAGGAACTGC CTCCTCCTCC CCCACCAAAG AAGAGACAGA TTCACGTGGA CGTGGAGGCC AAGAAAAAGT TTGATGCTAT AAGTACAGAG 
^2501      ^2511      ^2521      ^2531      ^2541      ^2551      ^2561      ^2571      ^2581      ^2591      

CTGCTGAACT GGATTTTGAA ATCAAAGACT GCCATTCAGA ACACAGAGAT GAAAGAATAT AAGAAGTCGC AGGAGACCTC AGGAATGAAA AAGAAATTGA 
^2601      ^2611      ^2621      ^2631      ^2641      ^2651      ^2661      ^2671      ^2681      ^2691      

AGGGATTAGA GAAAGAACAG AAGGAAAATC TGCCCCGACT GGACGAACTG AATCAAACCG GACAAACCCT CCGGGAGCAA ATGGGAAAAG AAGGCCTTTC 
^2701      ^2711      ^2721      ^2731      ^2741      ^2751      ^2761      ^2771      ^2781      ^2791      

CACTGAAGAA GTAAACGATG TTCTGGAAAG GGTTTCGTTG GAGTGGAAGA TGATATCTCA GCAGCTAGAA GATCTGGGAA GGAAGATCCA GCTGCAGGAA 
^2801      ^2811      ^2821      ^2831      ^2841      ^2851      ^2861      ^2871      ^2881      ^2891      

GATATAAATG CTTATTTTAA GCAGCTTGAT GCCATTGAGG AGACCATCAA GGAGAAGGAA GAGTGGCTGA GGGGCACACC CATTTCTGAA TCGCCCCGGC 
^2901      ^2911      ^2921      ^2931      ^2941      ^2951      ^2961      ^2971      ^2981      ^2991      

AGCCCTTGCC AGGCTTAAAG GATTCTTGCC AGAGGGAACT GACAGATCTC CTTGGCCTTC ACCCCAGAAT TGAGACGCTG TGTGCAAGCT GTTCAGCCCT 
^3001      ^3011      ^3021      ^3031      ^3041      ^3051      ^3061      ^3071      ^3081      ^3091      

GAAGTCTCAG CCCTGTGTCC CAGGTTTTGT CCAGCAGGGT TTTGACGACC TTCGACATCA TTACCAGGCT GTGCGGAAGG CTTTAGAGGA ATACCAACAA 
^3101      ^3111      ^3121      ^3131      ^3141      ^3151      ^3161      ^3171      ^3181      ^3191      

CAACTAGAAA ATGAGCTGAA GAGCCAGCCT GGACCCGCGT ATTTGGACAC ACTGAATACC CTGAAAAAAA TGCTAAGCGA GTCAGAAAAG GCGGCCCAGG 
^3201      ^3211      ^3221      ^3231      ^3241      ^3251      ^3261      ^3271      ^3281      ^3291      

CCTCTCTGAA TGCCCTGAAC GATCCCATAG CGGTGGAGCA GGCCCTGCAG GAGAAAAAGG CCCTTGATGA AACCCTTGAG AATCAGAAAC ATACGTTACA 
^3301      ^3311      ^3321      ^3331      ^3341      ^3351      ^3361      ^3371      ^3381      ^3391      

TAAGCTTTCA GAAGAAACGA AGACTTTGGA GAAAAATATG CTTCCTGATG TGGGGAAAAT GTATAAACAA GAATTTGATG ATGTCCAAGG CAGATGGAAT 
^3401      ^3411      ^3421      ^3431      ^3441      ^3451      ^3461      ^3471      ^3481      ^3491      

AAAGTAAAGA CCAAGGTTTC CAGAGACTTA CACTTGCTCG AGGAAATCAC CCCCAGACTC CGAGATTTTG AGGCTGATTC AGAAGTCATT GAGAAGTGGG 
^3501      ^3511      ^3521      ^3531      ^3541      ^3551      ^3561      ^3571      ^3581      ^3591      

TGAGTGGCAT CAAAGACTTC CTCATGAAAG AACAGGCTGC TCAAGGAGAC GCTGCTGCGC TGCAGAGCCA GCTTGACCAA TGTGCTACGT TTGCTAATGA 
^3601      ^3611      ^3621      ^3631      ^3641      ^3651      ^3661      ^3671      ^3681      ^3691      

AATCGAAACC ATCGAGTCAT CTCTGAAGAA CATGAGGGAA GTAGAGACTA GCCTTCAGAG GTGTCCAGTC ACTGGAGTCA AGACATGGGT ACAGGCAAGA 
^3701      ^3711      ^3721      ^3731      ^3741      ^3751      ^3761      ^3771      ^3781      ^3791      

CTAGTGGATT ACCAATCCCA ACTGGAGAAA TTCAGCAAAG AGATTGCTAT TCAAAAAAGC AGGCTGTCAG ATAGTCAAGA AAAAGCCCTG AACTTGAAAA 
^3801      ^3811      ^3821      ^3831      ^3841      ^3851      ^3861      ^3871      ^3881      ^3891      

AGGATTTGGC TGAGATGCAG GAGTGGATGG CACAGGCTGA AGAGGACTAC CTGGAGAGGG ACTTCGAGTA CAAATCTCCA GAAGAACTCG AGAGTGCGGT 
^3901      ^3911      ^3921      ^3931      ^3941      ^3951      ^3961      ^3971      ^3981      ^3991      

GGAGGAAATG AAGAGGGCAA AAGAGGAGGT GCTGCAGAAG GAGGTGAGGG TGAAAATTCT GAAGGACAGC ATCAAGCTGG TGGCTGCCAA GGTGCCCTCT 
^4001      ^4011      ^4021      ^4031      ^4041      ^4051      ^4061      ^4071      ^4081      ^4091      

GGTGGCCAGG AGTTGACGTC GGAATTCAAC GAGGTGCTGG AGAGCTACCA GCTTCTGTGC AATAGAATTC GAGGGAAGTG CCACACACTG GAGGAGGTCT 
^4101      ^4111      ^4121      ^4131      ^4141      ^4151      ^4161      ^4171      ^4181      ^4191      

GGTCTTGCTG GGTGGAGCTG CTTCACTATC TGGACCTGGA GACCACGTGG TTGAACACCT TGGAGGAGCG CGTGAGGAGC ACGGAGGCCC TGCCTGAGAG 
^4201      ^4211      ^4221      ^4231      ^4241      ^4251      ^4261      ^4271      ^4281      ^4291      

GGCAGAAGCT GTTCATGAAG CTCTGGAGTC TCTTGAGTCT GTTTTGCGCC ATCCGGCGGA TAATCGCACC CAGATTCGGG AACTTGGGCA GACTCTGATT 
^4301      ^4311      ^4321      ^4331      ^4341      ^4351      ^4361      ^4371      ^4381      ^4391      

GATGGTGGAA TCCTGGATGA CATAATCAGC GAGAAGCTGG AGGCTTTTAA CAGCCGCTAC GAAGAGCTGA GTCACTTGGC GGAGAGCAAA CAGATTTCTT 
^4401      ^4411      ^4421      ^4431      ^4441      ^4451      ^4461      ^4471      ^4481      ^4491      

TGGAGAAGCA ACTCCAGGTC CTCCGCGAAA CTGACCACAT GCTTCAGGTG CTGAAGGAGA GCCTGGGGGA GCTGGACAAA CAGCTTACCA CATACCTGAC 
^4501      ^4511      ^4521      ^4531      ^4541      ^4551      ^4561      ^4571      ^4581      ^4591      

GGACAGGATC GATGCCTTCC AACTGCCACA GGAAGCTCAG AAGATCCAAG CCGAAATCTC AGCCCATGAG CTCACCCTGG AGGAGCTGAG GAAGAATGTG 
^4601      ^4611      ^4621      ^4631      ^4641      ^4651      ^4661      ^4671      ^4681      ^4691      

CGCTCCCAGC CCCCGACGTC CCCTGAGGGC AGGGCCACCA GAGGAGGAAG TCAGATGGAC ATGCTACAGA GGAAACTTCG AGAGGTCTCC ACCAAATTCC 
^4701      ^4711      ^4721      ^4731      ^4741      ^4751      ^4761      ^4771      ^4781      ^4791      

AGCTTTTCCA GAAGCCCGCA AATTTCGAGC AGCGGATGCT GGACTGCAAG CGTGTGTTGG AGGGAGTGAA GGCCGAGCTT CATGTCCTCG ATGTGAGGGA 
^4801      ^4811      ^4821      ^4831      ^4841      ^4851      ^4861      ^4871      ^4881      ^4891      

TGTGGACCCT GACGTCATTC AGGCCCACTT GGACAAGTGC ATGAAACTAT ATAAAACGTT GAGTGAAGTC AAACTTGAAG TTGAGACTGT CATCAAAACA 
^4901      ^4911      ^4921      ^4931      ^4941      ^4951      ^4961      ^4971      ^4981      ^4991      

GGGAGGCACA TTGTCCAGAA GCAGCAGACG GACAACCCGA AAAGCATGGA CGAACAGCTT ACATCTCTGA AAGTCCTCTA CAATGACCTG GGCGCACAGG 
^5001      ^5011      ^5021      ^5031      ^5041      ^5051      ^5061      ^5071      ^5081      ^5091      

TGACAGAAGG GAAGCAAGAC CTGGAAAGAG CCTCACAGCT GTCCAGGAAG ATGAAGAAGG AGGCTGCCGT CCTCTCTGAA TGGCTCTCTG CCACAGAGGC 
^5101      ^5111      ^5121      ^5131      ^5141      ^5151      ^5161      ^5171      ^5181      ^5191      

AGAACTAGTG CAGAAATCCA CATCAGAAGG CGTGATTGGT GACCTGGACA CAGAAATCTC CTGGGCTAAA AGTATTCTCA AGGATCTGGA AAAGAGGAAA 
^5201      ^5211      ^5221      ^5231      ^5241      ^5251      ^5261      ^5271      ^5281      ^5291      

GTTGACTTAA ATGGCATTAC AGAGAGCAGT GCCGCCCTTC AGCACTTGGT CTTGGGCAGT GAGTCTGTTC TGGAAGAGAA CCTCTGTGTG CTCAATGCTG 
^5301      ^5311      ^5321      ^5331      ^5341      ^5351      ^5361      ^5371      ^5381      ^5391      

GATGGAGCCG AGTGCGGACG TGGACCGAAG ACTGGTGCAA CACCTTGCTG AACCATCAAA ACCAGCTGGA GCTATTTGAT GGACACGTCG CTCACATCAG 
^5401      ^5411      ^5421      ^5431      ^5441      ^5451      ^5461      ^5471      ^5481      ^5491      

TACCTGGCTC TATCAAGCCG AAGCTCTGCT GGATGAGATC GAAAAGAAAC CAGCGAGTAA ACAGGAAGAA ATTGTGAAGC GTTTACTGTC TGAATTGGAT 
^5501      ^5511      ^5521      ^5531      ^5541      ^5551      ^5561      ^5571      ^5581      ^5591      

GATGCCAGCC TCCAGGTTGA GAATGTTCGG GAACAAGCCA TCATCTTGGT GAATGCTCGT GGAAGCGCCA GCAGGGAACT CGTGGAACCA AAATTAGCCG 
^5601      ^5611      ^5621      ^5631      ^5641      ^5651      ^5661      ^5671      ^5681      ^5691      

AGCTGAGCAG GAACTTTGAA AAGGTGTCCC AGCACATAAA GAGCGCCCGA ATGCTGATTG GTCAGGACCC TTCATCCTAC CAAGGCTTGG ACCCTGCTGG 
^5701      ^5711      ^5721      ^5731      ^5741      ^5751      ^5761      ^5771      ^5781      ^5791      

AACTGTTCAA GCTGCTGAGT CTTTCTCTGA CTTGGAAAAC TTAGAACAAG ACATAGAAAA CATGTTGAAA GTTGTGGAAA AGCACTTGGA CCCCAATAAC 
^5801      ^5811      ^5821      ^5831      ^5841      ^5851      ^5861      ^5871      ^5881      ^5891      

GATGAGAAGA TGGATGAGGA GCAAGCCCAG ATTGAGGAAG TTCTACAAAG AGGGGAGCAT TTGTTACATG AACCTATGGA GGACAGTAAG AAAGAAAAGA 
^5901      ^5911      ^5921      ^5931      ^5941      ^5951      ^5961      ^5971      ^5981      ^5991      

TCCGCTTGCA GTTGTTACTT TTGCATACTC GTTACAACAA AATTAAGACA ATCCCTATCC AGCAGAGAAA AACAATTCCA GTTTCTTCTG GAATTACATC 
^6001      ^6011      ^6021      ^6031      ^6041      ^6051      ^6061      ^6071      ^6081      ^6091      

ATCAGCCCTC CCTGCAGATT ATTTGGTTGA AATTAATAAA ATTTTACTCA CTCTGGATGA CATTGAATTA TCACTTAATA TGCCGGAGCT AAACACCACT 
^6101      ^6111      ^6121      ^6131      ^6141      ^6151      ^6161      ^6171      ^6181      ^6191      

GTCTACAAAG ACTTCTCTTT CCAGGAAGAC TCTCTGAAGA GTATCAAAGG TCAACTGGAC AGACTTGGAG AGCAGATTGC AGTTGTTCAC GAGAAGCAGC 
^6201      ^6211      ^6221      ^6231      ^6241      ^6251      ^6261      ^6271      ^6281      ^6291      

CGGATGTCAT CGTGGAAGCC TCTGGCCCTG AGGCCATTCA GATCAGGGAC ATGCTCGCTC AGCTGAATGC AAAATGGGAC CGAGTGAATA GAGTGTACAG 
^6301      ^6311      ^6321      ^6331      ^6341      ^6351      ^6361      ^6371      ^6381      ^6391      

TGATCGGAGA GGGTCCTTTG CCAGGGCTGT GGAGGAATGG AGGCAGTTCC ACCATGACCT TGATGACCTT ACACAGTGGC TATCTGAAGC TGAAGACCTG 
^6401      ^6411      ^6421      ^6431      ^6441      ^6451      ^6461      ^6471      ^6481      ^6491      

CTGGTAGACA CTTGTGCTCC AGATGGTAGC CTGGACCTGG AGAAAGCCAG GGCACAGCAG CTGGAACTGG AAGAGGGCCT CAGCAGCCAC CAGCCCAGCC 
^6501      ^6511      ^6521      ^6531      ^6541      ^6551      ^6561      ^6571      ^6581      ^6591      

TGATCAAGGT TAACCGAAAG GGGGAGGACC TTGTTCAGAG ACTCCGCCCC TCGGAGGCAA GCTTCCTGAA GGAGAAGCTG GCAGGTTTCA ACCAGCGCTG 
^6601      ^6611      ^6621      ^6631      ^6641      ^6651      ^6661      ^6671      ^6681      ^6691      

GAGCACTCTT GTAGCTGAGG TGGAGGCTTT GCAGCCCAGG CTAAAAGGAG AAAGTCAGCA GGTGTTGGGG TATAAGAGAC GGCTAGATGA GGTCACCTGC 
^6701      ^6711      ^6721      ^6731      ^6741      ^6751      ^6761      ^6771      ^6781      ^6791      

TGGTTAACGA AAGTGGAGAG TGCTGTGCAG AAGAGATCAA CCCCTGACCC GGAAGAAAGC CCACAGGAAT TAACAGATTT AGCCCAAGAG ACGGAAGTTC 
^6801      ^6811      ^6821      ^6831      ^6841      ^6851      ^6861      ^6871      ^6881      ^6891      

AAGCTGAAAA CATTAAGTGG CTGAACAGAG CAGAACTGGA AATGCTTTCA GACAAAAATC TGAGTTTGCG TGAAAGAGAG AAACTTTCGG AAAGTTTAAG 
^6901      ^6911      ^6921      ^6931      ^6941      ^6951      ^6961      ^6971      ^6981      ^6991      

GAATGTAAAC ACAACATGGA CCAAGGTATG CAGAGAAGTG CCTAGCCTCC TGAAGACACG CACCCAAGAC CCCTGCTCTG CCCCACAGAT GAGGATGGCT 
^7001      ^7011      ^7021      ^7031      ^7041      ^7051      ^7061      ^7071      ^7081      ^7091      

GCTCATCCCA ACGTCCAAAA GGTGGTGCTA GTATCATCTG CATCAGATGC TCCTCTGCGT GGCGGCCTGG AAATCTCGGT TCCTGCTGAT TTGGATAAAA 
^7101      ^7111      ^7121      ^7131      ^7141      ^7151      ^7161      ^7171      ^7181      ^7191      

CCATCACAGA ACTGGCTGAC TGGCTGGTAT TGATCGACCA AATGCTGAAG TCCAACATTG TCACTGTGGG GGACGTGAAA GAGATCAATA AGACAGTTTC 
^7201      ^7211      ^7221      ^7231      ^7241      ^7251      ^7261      ^7271      ^7281      ^7291      

CCGGATGAAA ATCACAAAGG CTGATTTAGA ACAACGCCAT CCTCAGCTTG ATTGTGTATT TACCTTGGCC CAAAATTTGA AAAACAAAGC TTCCAGTTCA 
^7301      ^7311      ^7321      ^7331      ^7341      ^7351      ^7361      ^7371      ^7381      ^7391      

GATGTGAGGA CAGCAATCAC AGAAAAATTG GAAAAGCTGA AGACCCAGTG GGAGAGTACT CAGCATGGTG TGGAGCTGCG GCGGCAGCAG CTGGAGGACA 
^7401      ^7411      ^7421      ^7431      ^7441      ^7451      ^7461      ^7471      ^7481      ^7491      

TGGTTGTGGA CAGCCTGCAG TGGGACGACC ACAGGGAAGA GACTGAAGAG CTCATGAGAA AATACGAGGC TCGCTTCTAC ATGCTGCAGC AGGCCCGCCG 
^7501      ^7511      ^7521      ^7531      ^7541      ^7551      ^7561      ^7571      ^7581      ^7591      

GGACCCACTT AGCAAACAAG TTTCTGATAA TCAACTATTG CTTCAAGAGC TGGGGTCTGG CGATGGTGTC ATCATGGCGT TTGATAATGT CCTGCAGAAA 
^7601      ^7611      ^7621      ^7631      ^7641      ^7651      ^7661      ^7671      ^7681      ^7691      

CTTCTGGAAG AATACAGTGG CGATGACACA AGGAATGTGG AAGAAACCAC GGAGTACTTG AAAACATCAT GGGTCAATCT CAAACAAAGC ATCGCTGATA 
^7701      ^7711      ^7721      ^7731      ^7741      ^7751      ^7761      ^7771      ^7781      ^7791      

GACAGAGTGC CTTGGAGGCT GAGCTACAGA CAGTGCAGAC TTCTCGTAGA GACCTGGAGA ACTTTGTCAA GTGGCTTCAG GAAGCAGAAA CCACAGCAAA 
^7801      ^7811      ^7821      ^7831      ^7841      ^7851      ^7861      ^7871      ^7881      ^7891      

TGTGCTGGCC GATGCCTCTC AGCGGGAGAA TGCTCTTCAG GACAGTGTCC TGGCCCGGCA GCTCCGACAG CAGATGCTGG ACATCCAGGC AGAAATTGAT 
^7901      ^7911      ^7921      ^7931      ^7941      ^7951      ^7961      ^7971      ^7981      ^7991      

GCCCACAATG ACATATTTAA AAGCATCGAT GGAAACCGGC AGAAGATGGT GAAAGCTCTG GGGAATTCTG AGGAAGCAAC AATGCTTCAG CATCGACTGG 
^8001      ^8011      ^8021      ^8031      ^8041      ^8051      ^8061      ^8071      ^8081      ^8091      

ATGACATGAA CCAAAGATGG AATGATTTGA AGGCAAAATC TGCTAGCATC AGGGCCCATT TGGAGGCCAG TGCTGAGAAA TGGAACCGGT TGCTGGCATC 
^8101      ^8111      ^8121      ^8131      ^8141      ^8151      ^8161      ^8171      ^8181      ^8191      

GCTGGAAGAG CTGATCAAAT GGCTCAATAT GAAAGATGAG GAGCTTAAGA AGCAGATGCC CATTGGAGGG GACGTCCCTG CCTTACAGCT CCAGTATGAC 
^8201      ^8211      ^8221      ^8231      ^8241      ^8251      ^8261      ^8271      ^8281      ^8291      

CACTGCAAGG TGCTGAGACG TGAGCTAAAG GAGAAAGAGT ATTCTGTGCT GAACGCCGTA GATCAAGCTC GAGTTTTTCT GGCTGATCAG CCAATAGAGG 
^8301      ^8311      ^8321      ^8331      ^8341      ^8351      ^8361      ^8371      ^8381      ^8391      

CCCCCGAAGA ACCAAGAAGA AACCCACAAT CAAAGACAGA GTTGACTCCT GAGGAGAGAG CCCAGAAGAT CGCCAAAGCC ATGCGCAAGC AGTCTTCTGA 
^8401      ^8411      ^8421      ^8431      ^8441      ^8451      ^8461      ^8471      ^8481      ^8491      

AGTCCGAGAG AAGTGGGAAA ATCTAAATGC TGTCACTAGC AACTGGCAAA AGCAAGTAGG GAAGGCGTTA GAGAAACTCC GAGACCTGCA GGGAGCTATG 
^8501      ^8511      ^8521      ^8531      ^8541      ^8551      ^8561      ^8571      ^8581      ^8591      

GACGACCTGG ACGCAGACAT GAAGGAGGTG GAGGCTGTGC GGAATGGCTG GAAGCCCGTG GGAGACCTGC TTATAGACTC CCTGCAGGAT CACATCGAGA 
^8601      ^8611      ^8621      ^8631      ^8641      ^8651      ^8661      ^8671      ^8681      ^8691      

AAACCCTGGC GTTTAGAGAA GAAATTGCAC CAATCAACTT AAAAGTAAAA ACAATGAATG ACCTGTCCAG TCAGCTGTCT CCACTTGACT TGCATCCATC 
^8701      ^8711      ^8721      ^8731      ^8741      ^8751      ^8761      ^8771      ^8781      ^8791      

TCTAAAGATG TCTCGCCAGC TGGATGACCT TAATATGCGA TGGAAACTTC TACAGGTTTC CGTGGACGAT CGCCTTAAGC AGCTCCAGGA AGCCCACAGA 
^8801      ^8811      ^8821      ^8831      ^8841      ^8851      ^8861      ^8871      ^8881      ^8891      

GATTTTGGGC CATCTTCTCA ACACTTTCTG TCCACTTCAG TCCAGCTGCC GTGGCAGAGA TCCATTTCAC ATAATAAAGT GCCCTATTAC ATCAACCATC 
^8901      ^8911      ^8921      ^8931      ^8941      ^8951      ^8961      ^8971      ^8981      ^8991      

AAACACAGAC AACCTGTTGG GATCATCCTA AAATGACTGA GCTCTTCCAA TCCCTTGCTG ATCTGAATAA TGTACGTTTC TCTGCCTACC GCACAGCAAT 
^9001      ^9011      ^9021      ^9031      ^9041      ^9051      ^9061      ^9071      ^9081      ^9091      

CAAAATTCGA AGGCTGCAAA AAGCATTATG TCTGGATCTC TTAGAGCTGA ATACGACGAA TGAAGTTTTC AAGCAGCACA AACTGAACCA AAATGATCAG 
^9101      ^9111      ^9121      ^9131      ^9141      ^9151      ^9161      ^9171      ^9181      ^9191      

CTCCTGAGTG TCCCAGACGT CATCAACTGT CTGACCACCA CTTACGATGG GCTTGAGCAG CTGCACAAGG ACTTGGTCAA TGTTCCACTC TGCGTCGATA 
^9201      ^9211      ^9221      ^9231      ^9241      ^9251      ^9261      ^9271      ^9281      ^9291      

TGTGTCTCAA CTGGCTGCTC AACGTATACG ACACGGGCCG GACTGGAAAA ATTCGGGTAC AGAGTCTGAA GATTGGATTG ATGTCTCTCT CCAAAGGCCT 
^9301      ^9311      ^9321      ^9331      ^9341      ^9351      ^9361      ^9371      ^9381      ^9391      

CTTAGAAGAG AAATACAGAT GTCTCTTTAA GGAGGTGGCA GGGCCAACAG AGATGTGTGA CCAGCGGCAG CTTGGCCTGC TACTTCACGA TGCCATCCAG 
^9401      ^9411      ^9421      ^9431      ^9441      ^9451      ^9461      ^9471      ^9481      ^9491      

ATCCCTAGGC AGCTGGGGGA AGTAGCAGCC TTTGGGGGCA GTAACATTGA GCCCAGTGTC CGCAGCTGCT TCCAGCAGAA TAACAACAAG CCAGAAATCA 
^9501      ^9511      ^9521      ^9531      ^9541      ^9551      ^9561      ^9571      ^9581      ^9591      

GTGTGAAGGA GTTTATAGAC TGGATGCATT TGGAACCCCA GTCCATGGTG TGGTTGCCGG TTCTGCATCG GGTCGCAGCT GCTGAGACTG CAAAACATCA 
^9601      ^9611      ^9621      ^9631      ^9641      ^9651      ^9661      ^9671      ^9681      ^9691      

GGCCAAATGC AACATCTGCA AAGAATGCCC GATTGTTGGG TTCAGATACA GGAGCCTAAA GCATTTTAAT TATGATGTCT GCCAGAGTTG CTTCTTTTCT 
^9701      ^9711      ^9721      ^9731      ^9741      ^9751      ^9761      ^9771      ^9781      ^9791      

GGAAGAACAG CAAAGGGCCA CAAGTTACAT TACCCGATGG TAGAATACTG CATACCGACA ACATCTGGGG AAGATGTGAG AGATTTCACT AAGGTGCTGA 
^9801      ^9811      ^9821      ^9831      ^9841      ^9851      ^9861      ^9871      ^9881      ^9891      

AGAACAAGTT CAGGTCCAAG AAATATTTTG CCAAACATCC TCGGCTTGGC TACCTGCCTG TCCAGACCGT GCTGGAAGGG GACAACTTAG AAACTCCTAT 
^9901      ^9911      ^9921      ^9931      ^9941      ^9951      ^9961      ^9971      ^9981      ^9991      

CACGCTCATC AGTATGTGGC CAGAGCACTA TGACCCCTCC CAGTCCCCTC AGCTGTTTCA TGATGACACC CACTCAAGAA TAGAGCAATA CGCTACACGA 
^10001     ^10011     ^10021     ^10031     ^10041     ^10051     ^10061     ^10071     ^10081     ^10091     

CTGGCCCAGA TGGAAAGGAC AAACGGGTCC TTCCTAACTG ATAGCAGCTC TACAACAGGA AGCGTGGAGG ATGAGCATGC CCTCATCCAG CAGTACTGCC 
^10101     ^10111     ^10121     ^10131     ^10141     ^10151     ^10161     ^10171     ^10181     ^10191     

AGACCCTGGG CGGGGAGTCA CCTGTGAGTC AGCCGCAGAG TCCAGCTCAG ATCCTGAAGT CCGTGGAGAG GGAAGAGCGT GGGGAACTGG AGCGGATCAT 
^10201     ^10211     ^10221     ^10231     ^10241     ^10251     ^10261     ^10271     ^10281     ^10291     

TGCTGACTTG GAGGAAGAGC AAAGAAATCT GCAGGTGGAG TATGAGCAGC TGAAGGAGCA GCACCTAAGA AGGGGTCTCC CTGTGGGCTC CCCTCCAGAC 
^10301     ^10311     ^10321     ^10331     ^10341     ^10351     ^10361     ^10371     ^10381     ^10391     

TCCATCGTAT CTCCTCACCA CACATCTGAG GACTCAGAAC TTATAGCAGA AGCTAAACTC CTGCGGCAGC ACAAAGGGCG GCTGGAGGCG AGGATGCAAA 
^10401     ^10411     ^10421     ^10431     ^10441     ^10451     ^10461     ^10471     ^10481     ^10491     

TTTTGGAAGA TCACAATAAA CAGCTGGAGT CTCAGCTGCA CCGCCTCAGA CAGCTCCTGG AGCAGCCTGA CTCTGACTCC CGCATCAATG GTGTCTCCCC 
^10501     ^10511     ^10521     ^10531     ^10541     ^10551     ^10561     ^10571     ^10581     ^10591     

CTGGGCTTCC CCACAGCATT CTGCATTGAG CTACTCACTT GACACTGACC CAGGCCCACA GTTCCACCAG GCAGCATCTG AGGACCTGCT GGCCCCACCT 
^10601     ^10611     ^10621     ^10631     ^10641     ^10651     ^10661     ^10671     ^10681     ^10691     

CACGACACTA GCACGGACCT CACGGACGTG ATGGAGCAGA TCAACAGCAC GTTTCCCTCT TGCAGCTCAA ATGTCCCCAG CAGGCCACAG GCAATGTGAG 
^10701     ^10711     ^10721     ^10731     ^10741     ^10751     ^10761     ^10771     ^10781     ^10791     

CATCTATCCA GCCAGCCAAC ATTTCCCGAC CTTCAGTATT GCCCTCTTCT GCAAATGCCA ATCCCAAGAC CCATTCAACC CCAAAGCTCC GTGGCTCCAC 
^10801     ^10811     ^10821     ^10831     ^10841     ^10851     ^10861     ^10871     ^10881     ^10891     

GACACAAGCT GTTGAGTGCT TACTGGGTGT TCTACTGAGG GAACCAAACA CTGACTATCC AAAGAGAAAA GGATATTTTG GTTTTCTAAT AACGTATATT 
^10901     ^10911     ^10921     ^10931     ^10941     ^10951     ^10961     ^10971     ^10981     ^10991     

ATTGTTTTCT TCTCCCCTTT CTATGCAACT GTAAATTAAT GAACAGAGAA GTATTTGGAG GTGGTAAAGC ATTTGTCACT GATTTGTATA ATATATACAG 
^11001     ^11011     ^11021     ^11031     ^11041     ^11051     ^11061     ^11071     ^11081     ^11091     

CCATGGGAAA GTGGGTGGGG GCTTTCTAAT ATGAAACTGT CTTTTTAATA ACCAAGAGAA AAAATTGCAT AAGAATTAGA CCACTTTACA TTATTACATT 
^11101     ^11111     ^11121     ^11131     ^11141     ^11151     ^11161     ^11171     ^11181     ^11191     

CCTTCTGCTG TTCACATTAA CCTTGTACAA TAACTTCACT TATTATTTGA CTGTTTTACC ATTATGTTTT GGTTATTTAT AAATTTATCA GCCATACAAA 
^11201     ^11211     ^11221     ^11231     ^11241     ^11251     ^11261     ^11271     ^11281     ^11291     

CAAATAGATT CTATGTATTT GTTTCTATAA TCTGGCCAAA TTCCTAAGTT CATATATTTG AATCAAATAT TTTACATATG TGGAGTAGGC AGGCATTCTG 
^11301     ^11311     ^11321     ^11331     ^11341     ^11351     ^11361     ^11371     ^11381     ^11391     

AAGATACTAT TTAACTTTAG TTGACGTCAC ACACACCATC CTTTAGTAAC CACTGGATGA CTACACTAAA AATCCTGTGG ACTTTAACGG CAAGCTGCTG 
^11401     ^11411     ^11421     ^11431     ^11441     ^11451     ^11461     ^11471     ^11481     ^11491     

GGGTATTTTT CCTCCTGTTT TTATTCCTTT TTTGTAAGTA GATCTTGACG TCTTTATTTA TTTCATCTTG CAATCTCTAT AATAAAGAAG ACTGTATTGT 
^11501     ^11511     ^11521     ^11531     ^11541     ^11551     ^11561     ^11571     ^11581     ^11591     

AATAGTCTCA AAAAATTATT TTACCAAGGG TTACCATTTA AGCATATTTT CATTTTGATT CAGAAACCAA AGTTGGTACA ACCTCTCCTA GTACTTGCAA 
^11601     ^11611     ^11621     ^11631     ^11641     ^11651     ^11661     ^11671     ^11681     ^11691     

CCTTGGTTTT CATGAGAAAA CACACGGCAG GCTTTGCCCA TTGTGAGGAG AGCACACATC ATGCTCTTCA GTTTCCTTTG AATAGACTTT TATTGTTGTT 
^11701     ^11711     ^11721     ^11731     ^11741     ^11751     ^11761     ^11771     ^11781     ^11791     

TTTGTATTTT TCGAGTCCTG TGTAAGTTTT GAAAGCTCTG GTTGTTTCCT TTGTGAAAGC AGGCAGATAC TTATTGGCTG TCTCATTTGA AGCTTTGGAG 
^11801     ^11811     ^11821     ^11831     ^11841     ^11851     ^11861     ^11871     ^11881     ^11891     

CAGATAGTCA GATGTCTCAT GACCCCTCAC TTGGCCAGCA GCACATCCGA GAAGGATGTC ACTCACAAGC CTACACCACG GCTTCTCTAG AATGAAATCA 
^11901     ^11911     ^11921     ^11931     ^11941     ^11951     ^11961     ^11971     ^11981     ^11991     

GTGCTCGGAT GATTGTATCC CTGCCTCTAC TTCTGAGTGT GTTCAACTAG GTATTGGCTT CTTTTTCTTT TTCTTTTCTT TTTTTTTTAA TTTAACACTT 
^12001     ^12011     ^12021     ^12031     ^12041     ^12051     ^12061     ^12071     ^12081     ^12091     

AATTGCCGAT TTTAGAGAAA CCAAAAATAA AGGTGAAGGT AATATGTTTT GATTCAAACA TATATGCTTT TAAAACATCA GGACATGCTA ACTTTGGGTT 
^12101     ^12111     ^12121     ^12131     ^12141     ^12151     ^12161     ^12171     ^12181     ^12191     

CTCTTTCACT GGGATCTGGC CAGAAGGAGG CTGAAAGTTA GAAATTGCTA TTCTTTTAGG ATCGGTTGGG TGGGTTGGGG GGCAAGGGTG TCTATTTGCA 
^12201     ^12211     ^12221     ^12231     ^12241     ^12251     ^12261     ^12271     ^12281     ^12291     

GCATAGATAT TTTGAGACGA AGAAAATTGT TTTATATAAG GGGAGAGCCA TGATCACCTT TCTACCTCAG AACCACCTTC CTCCATTGTG TTGGACATAG 
^12301     ^12311     ^12321     ^12331     ^12341     ^12351     ^12361     ^12371     ^12381     ^12391     

CTTTATATGC CGCAGTGTGC AAAACCTAGG GCTGTAGTCA GGCCTTTCCA TACCCAGGAA GCACCTGTGT AAAGAAGATC AACAGAAACT CCCGGAACTC 
^12401     ^12411     ^12421     ^12431     ^12441     ^12451     ^12461     ^12471     ^12481     ^12491     

AGAACCCCAA GTTGTAGATT TGGTGTCGTC CTTGTTCTTG CTTTGAGGAG TCATGTATTC TTTTATTTCC TGCCTGTATT TGTATGCAAA ATGATCTCTA 
^12501     ^12511     ^12521     ^12531     ^12541     ^12551     ^12561     ^12571     ^12581     ^12591     

TCTGCTATTA CAGAAAAAGC TACACAAAAC ACTACATTGT AACCTTCTGA GTAATAAATA AGAGGAAATA TATTACAGTA ACCATGATGA GAAATAAGTG 
^12601     ^12611     ^12621     ^12631     ^12641     ^12651     ^12661     ^12671     ^12681     ^12691     

TATTGTTCTT TTGAAATATG TGGTTAATCG CAGACTGTCA TCTAATCTGT TACATACCGT ATTTTTCATC CTGAATAAAA GTAATTTTAA CACAAAATG
^12701     ^12711     ^12721     ^12731     ^12741     ^12751     ^12761     ^12771     ^12781     ^12791

Credibility of mRNA sequence:

only_fragment_published_or_from_author_and_the_rest_is_a_guess

The organism containing this mRNA with IRES segment in its genome:

Mus musculus MEF (C57BL/6) [MEF-BL/6-1] (ATCC SCRC-1008)

A promoter reported in cDNA corresponding to IRES sequence:
no The total number of notable open-reading frames (ORFs):
1

Summary of possible issues when IRES cDNA is experimentally transcribed in vivo:

Summary of experiments studying integrity of the in vivo transcripts in a particular host:

Integrity (uniformity) of mRNA tested using Northern-blot:
homogeneous_population_of_molecules_confirmed

Integrity (uniformity) of mRNA tested using RNase protection:
not_tested

Integrity (uniformity) of mRNA tested using 5'-RACE:
not_tested

Integrity (uniformity) of mRNA tested using primer extension :
not_tested

Integrity (uniformity) of mRNA tested using RT-PCR:
homogeneous_population_of_molecules_confirmed

Integrity (uniformity) of mRNA tested using real-time quantitative polymerase chain reaction (rtqPCR):
not_tested

Integrity (uniformity) of mRNA tested using RNAi:
not_tested

Integrity (uniformity) of mRNA tested using S1 nuclease mapping:
not_tested

Cryptic promoter presence was confirmed by expression from a promoter-less plasmid:
no_promoter_confirmed

Cryptic promoter presence was confirmed in an experimental setup involving inducible promoter:
not_tested

Integrity (uniformity) of mRNA molecules or possible promoter presence expressed in vivo was tested using another method, please specify in Remarks:
not_tested

The organism used:

Mus musculus C2C12

Notable Open-Reading Frames (ORFs; protein coding regions) in the mRNA/+RNA sequence:

ORF

ORF position:

1

Version: `4`	Last change: `2006-08-04 00:00:00`
Originaly submitted by: Václav Vopálenský	Reviewed by: Martin Mokrejš

The abbreviated name of this ORF/gene:
Utrn

The description of the protein encoded in this ORF:
utrophin

The translational frameshift (ribosome slippage) involved:
0 The ribosome read-through involved:
no

The alternative forms of this protein occur by the alternative initiation of translation:

no

The ORF absolute position (the base range includes START and STOP codons or their equivalents):

507-10799

OPTIONAL: The function of the encoded protein

G-utrophin
GO:0030054;  Cellular component: cell junction (inferred from direct assay).
GO:0005856;  Cellular component: cytoskeleton (inferred from reviewed computational analysis).
GO:0005624;  Cellular component: membrane fraction (inferred from reviewed computational analysis).
GO:0045202;  Cellular component: synapse (inferred from direct assay).
GO:0003779;  Molecular function: actin binding (inferred from reviewed computational analysis).
GO:0005509;  Molecular function: calcium ion binding (inferred from reviewed computational analysis).
GO:0005515;  Molecular function: protein binding (inferred from physical interaction).
GO:0005198;  Molecular function: structural molecule activity (inferred from reviewed computational analysis).
GO:0004888;  Molecular function: transmembrane receptor activity (inferred from reviewed computational
analysis). GO:0007527;  Biological process: adult somatic muscle development (traceable author statement).
GO:0006935;  Biological process: chemotaxis (inferred from reviewed computational analysis).
GO:0006936;  Biological process: muscle contraction (inferred from reviewed computational analysis).
GO:0007517;  Biological process: muscle development (inferred from reviewed computational analysis).
GO:0007165;  Biological process: signal transduction (inferred from reviewed computational analysis).

Citations:

Miura P., Thompson J., Chakkalakal J. V., Holcik M., Jasmin B. J. (2005) The utrophin A 5'-untranslated region confers internal ribosome entry site-mediated translational control during regeneration of skeletal muscle fibers. J. Biol. Chem. 280(38):32997-33005

IRESs:

IRES:

Version: `4`	Last change: `2007-01-24 00:00:00`
Originaly submitted by: Václav Vopálenský	Reviewed by: Martin Mokrejš
The IRES name: `UtrA` Warning: please make ires_name same as the gene_name and optionally append to it coordinates. E.g. when gene/virus name is EMCV-R use EMCV-R_-222_to_-1 or EMCV-R_1-456, etc. but not Emcv-R-... or EMCV-222_to_-1. Please keep case of letters as well. This rewards when searching through the database.

The IRES absolute position (the range includes START and STOP codons or their equivalents):

1-506

Conclusion:
putative_IRES

How IRES boundaries were determined:
experimentally_determined

The sequence of IRES region aligned to its secondary structure (if available):

TTGTGGAGTC GCCCTTCCCC CGAGGAGGGG AGCGGGCAGC GCCGGGCGCG GGATTTCTCC CGCCCAGGGC CGAGGAGGAG CCCTGGGCTC CTCAACCGAT 
^1         ^11        ^21        ^31        ^41        ^51        ^61        ^71        ^81        ^91        

CGGGCCACCT CCGGGAGCGG CGCCCCTTTT CTTTCGGGTC ATTCCTGCAG AGGGAAAACT CCTGCGTGCG CCTGCCCCCA GGCTAGCGTT TGGACTGTTT 
^101       ^111       ^121       ^131       ^141       ^151       ^161       ^171       ^181       ^191       

TGTTTTTGGC GGAACTACCG GGCAGGAAGA TTGCACAAGT CAGGGGGCGT TTCCAATCGG GTGTCAATTT TGGATCTCCC CCCCCCCACC CCCCTTTGGA 
^201       ^211       ^221       ^231       ^241       ^251       ^261       ^271       ^281       ^291       

TCTTGTCGGG CTTTCCACGT TTCACTTAAA AAAAATTCTT GTAACGTCCA AGGCAAGCTC CCCACGACCC GAACACGCCC AGAGGAACCT TGGGGCCTCT 
^301       ^311       ^321       ^331       ^341       ^351       ^361       ^371       ^381       ^391       

GGGGACTTGG CTAGCAGGTA TTCATGCTAG CCTGGACCAT TTTTCAGATT TAGCCTTCAG AAGAGGATCT GGGAAAGCCT TTGGATTATA CTGAAACTCA 
^401       ^411       ^421       ^431       ^441       ^451       ^461       ^471       ^481       ^491       

TTCAAG
^501

Remarks:

Whole 5'-UTR region was tested.

Citations:

Last change to the database: 2019-03-18 09:32:49 GMT+1