IRESite_Id:435 summary record describing characteristics of REV-A IRES

IRESite: The database of experimentally verified IRES structures

The nucleic acid data:

IRESite Id: `435`	Version: `0`
Originaly submitted by: Martin Mokrejš
Reviewed by: Martin Mokrejš

IRESite record type:

natural_transcript

The shape of the nucleic acid molecule translated: `linear`	The quality of the mRNA/+RNA sequence: `our_best_guess`
The abbreviated name of the virus/gene coding for this mRNA/+RNA molecule: `REV-A`	The genetic origin of this natural mRNA/+RNA: `viral`

The GenBankId GI:# number of exactly this mRNA/+RNA sequence:
88605102

The mRNA/+RNA description:

Reticuloendotheliosis virus strain APC-566, complete genome.

The mRNA/+RNA sequence represented in the +DNA notation:

AATGTGGGAG GGAGCTCCGG GGGAATGTGG GAGGGAGCTC CGGGGGGGAA TAGCGCTGGC TCGCTAACTG CCATATTAGC TTCTGTAATC ATGCTTGCTT 
^1         ^11        ^21        ^31        ^41        ^51        ^61        ^71        ^81        ^91        

GCCTTAGCCG CCATTGTACT TGATATATTT CGCTGATATC ATTTCTCGGA ATCGGCATCA AGAGCAGGCT CATAAACCAT AAAAGGAAAT GTTTGTTGAA 
^101       ^111       ^121       ^131       ^141       ^151       ^161       ^171       ^181       ^191       

GGCAAGCATC AGACCACTTG CACCATCCAA TCACGAACAA ACACGAGATC GAACTATCAT ACTGAGCCAA TGGTTGTAAA GGGCAGATGC TATCCTCCAA 
^201       ^211       ^221       ^231       ^241       ^251       ^261       ^271       ^281       ^291       

TGAGGGAAAA TGTCATGCAA CATCCTGTAA GCGGCTATAT AAGCCAGGTG CATCTCTTGC TCGGGGTCGC CGTCCTACAC ATTGTTGTGA CGTGCGGCCC 
^301       ^311       ^321       ^331       ^341       ^351       ^361       ^371       ^381       ^391       

AGATTCGAAT CTGTAATAAA AGCTTTTTCT TCTATATCCT CAGATTGGCA GTGAGAGGAG ATTTTGTTCG TGGTGTTGGC TGGCCTACTG GGTGGGGTAG 
^401       ^411       ^421       ^431       ^441       ^451       ^461       ^471       ^481       ^491       

GGATCCGGAC TGAATCCGTA GTATTTCGGT ACAACATTTG GGGGCTCGTC CGGGATTCCT CCCCATCGGC AGAGGTGCCT ACTGTTTCTT CGAACTCCGG 
^501       ^511       ^521       ^531       ^541       ^551       ^561       ^571       ^581       ^591       

CGCCGGTAAG TAAGTACTTG ATTTTGGTAC CTCGCGAGGG TTTGGGAGGA TCGGAGTGGC GGGACGCTGC CGGGAAGCTC CACCTCCGCT CAGCAGGGGA 
^601       ^611       ^621       ^631       ^641       ^651       ^661       ^671       ^681       ^691       

CGCCCTGGTC TGAGCTCTGT GGTATCTGAT TGTTGTTGAA CCGTCTCTAA GACGGTGATA CTATAAGTCG TGGTTTGTGT GTTTGTTTGT TACCTTGTGT 
^701       ^711       ^721       ^731       ^741       ^751       ^761       ^771       ^781       ^791       

TTGTTCGTCA CTTGTCGACA GCGCCCTGCG AATTGGTGTA CCCACACCGC GCGGCTTGCG AATAATACTT TGGAGAGTCT TTTGCCTCCA GTGTCTTCCG 
^801       ^811       ^821       ^831       ^841       ^851       ^861       ^871       ^881       ^891       

TTTGTACTCG TCCTCCTCTC CCTCTCCGGC CGGGATGGGA CAGGCAGGAT CGAAGGGGCT TTTAACCCCT CTAGAGTGCA TTCTGAAGAA CTTCTCTGAC 
^901       ^911       ^921       ^931       ^941       ^951       ^961       ^971       ^981       ^991       

TTTAAGAAGA GGGCGGGAGA CTATGGGGAG GATGTGGATT CGTTTACCCT GCGCAAGTTA TGTGAGTTGG AATGGCCCAC GTTTGGCGTG GGGTGGCCGA 
^1001      ^1011      ^1021      ^1031      ^1041      ^1051      ^1061      ^1071      ^1081      ^1091      

AGGAAGGGAC TCTAGACTTT AGGGTGGTAG CCGCGGTCAG GAATATAGTT TTTGGGAATC CAGGGCATCC AGACCAGGTA ATATATATAA CCGTCTGGAT 
^1101      ^1111      ^1121      ^1131      ^1141      ^1151      ^1161      ^1171      ^1181      ^1191      

AGATATAACC ATAGAAAGGC CTAAATACTT GAAAGATTGC GGGTGTAAAC CCACAGGACC CTCTAAAGTT CTGTTAGCTA GCCAAAAAGT TAATCCCAGG 
^1201      ^1211      ^1221      ^1231      ^1241      ^1251      ^1261      ^1271      ^1281      ^1291      

CGGCCCGTGC TCCCCTCAGC CCCAGAAAGC CCCCCTCGGA TGAGGAGGGC TCAATTCCTG GATGAGAGAC CTCTCTCTCC GGCCCCAGCC CCTCCACCTC 
^1301      ^1311      ^1321      ^1331      ^1341      ^1351      ^1361      ^1371      ^1381      ^1391      

CATATCCTGA GGTACCTGCC ATTGCAGAGG AAGGTGAGGA GGGGCAACAA CCAGACTCTA CTGTAATGGC GAGCCCTCCC CACACCCGAA GTGGGTTAGA 
^1401      ^1411      ^1421      ^1431      ^1441      ^1451      ^1461      ^1471      ^1481      ^1491      

GTTCGGAGCA CAAGGGCCGT CAGGGATGTA CCCCCTTAGG GAAACTGGGG AACGGGATAT GGGTGGTCGC CCCATGAGAA CATATGTCCC ATTCACCACC 
^1501      ^1511      ^1521      ^1531      ^1541      ^1551      ^1561      ^1571      ^1581      ^1591      

TCGGATCTGT ATAATTGGAA AAACCAAAAC CCATCATTCT CCCAGGCTCC AGATGAAGTA ATTAGCCTAT TAGAATCCGT TTTCTATACA CACCAGCCTA 
^1601      ^1611      ^1621      ^1631      ^1641      ^1651      ^1661      ^1671      ^1681      ^1691      

CCTGGGATGA TTGCCAGCAA CTCCTCCGTA CCCTGTTTAC GACGGAGGAG AGGGAGAGGG TGAGGACAGA AAGTAGGCGG GAGGTCAGGA ATGATCAGGG 
^1701      ^1711      ^1721      ^1731      ^1741      ^1751      ^1761      ^1771      ^1781      ^1791      

AGTACAGGTC ACTGACGAGC GAGAAATAGA AGCCCAGTTC CCAGCTACTC GGCCCGACTG GGATCCTAAC ACAGGGAGAG GAAACGACAA TCTAGAACGA 
^1801      ^1811      ^1821      ^1831      ^1841      ^1851      ^1861      ^1871      ^1881      ^1891      

TATCGCCAGA TCTTGCTGAG GGGGCTCCGG GCAGCGGCAC GGAAACCCAC CAATCTTTCT AAAATAACTG AGGTTCGGCA GGGGGCGGAC GAAAGTCCTA 
^1901      ^1911      ^1921      ^1931      ^1941      ^1951      ^1961      ^1971      ^1981      ^1991      

CAGCTTACCT GGAGAGACTC TATCAGGCTT ATCGGACCTG GTCCCCCATA GATCCAAGGG CACCCGAGAA TCAGGCTGCC ATAGTCATTC AATTTGTATC 
^2001      ^2011      ^2021      ^2031      ^2041      ^2051      ^2061      ^2071      ^2081      ^2091      

TCAATCCGCG CCCGATATTA GGAAGAAAAT CCAAAAGATA GATGGGTTCC AGGGGAAATC TCTCTCCGAG TTAGTAGCTA TTGCCCAGAA GGTTTTCGAC 
^2101      ^2111      ^2121      ^2131      ^2141      ^2151      ^2161      ^2171      ^2181      ^2191      

CAACGGGAAG ACCCAGCCAA GGCAACTCAC GAACTCACTC AGAAGATGGC CAAGGTACTA CTCGCCCAGG AGAGTAGAGC GGAGAGAGGA AGTAAGAAGA 
^2201      ^2211      ^2221      ^2231      ^2241      ^2251      ^2261      ^2271      ^2281      ^2291      

CGCCTCCGGG TAAGGGACGC CCGCCTTTGG GGAAAAACCA ATGCGCGTAC TGTAAGGAGG AGGGACATTG GAAGAAGAAC TGTCCAAAAC TCGTAAGCGG 
^2301      ^2311      ^2321      ^2331      ^2341      ^2351      ^2361      ^2371      ^2381      ^2391      

GGCAACCCCA GTGTTGGTAG AAGAATTACA ATAGGGCCGT CAGGGTTCTT CCGCCCTCCG TGAACCCAGG CTAAAAGTTA AAGTAGGGGG GCAAATAATA 
^2401      ^2411      ^2421      ^2431      ^2441      ^2451      ^2461      ^2471      ^2481      ^2491      

GATTTTCTAG TAGATACGGG AGCGACCCAT TCTGTAGTGC AGAAACCTGT GGGGCCTATG TCTAAAGAAT CTGTAGCAAT TATCGGGGCT ACTGGGAACA 
^2501      ^2511      ^2521      ^2531      ^2541      ^2551      ^2561      ^2571      ^2581      ^2591      

TACGGAATTA CCCTAAGTCT GAAGGGCGTC TTGTGGACCT AGGGAGGGGA CTAGTGACTC ATTCATTTCT AGTGATTCCT GAGTGCCCAG ACCCACTATT 
^2601      ^2611      ^2621      ^2631      ^2641      ^2651      ^2661      ^2671      ^2681      ^2691      

GGGGAGGGAT CTATTACAGA AGCTAAGGGC TACCATCTCG TTCACCGGGG AAGGGCCCCC CGAAATACGG ACAGAAGGGA AACTATTGGT AACGGCTCCC 
^2701      ^2711      ^2721      ^2731      ^2741      ^2751      ^2761      ^2771      ^2781      ^2791      

CTGGAAGAGG AATACCGTTT GTTTTTAGAG GCGCCGATAC AAAATGTTAC GCTGCTAGAG CAGTGGAAAC GGGAAATCCC GAAAGTCTGG GCCGAGATAA 
^2801      ^2811      ^2821      ^2831      ^2841      ^2851      ^2861      ^2871      ^2881      ^2891      

ATCCCCCGGG GTTGGCATCC ACACAAGCCC CCATTCATGT CCAGCTATTA AGTACCGCCC TACCTGTGAG GGTAAGACAG TATCCTATTA CCCTGGAGGC 
^2901      ^2911      ^2921      ^2931      ^2941      ^2951      ^2961      ^2971      ^2981      ^2991      

AAAACGAAGC CTGCGCGAAA CTATTCGCAA ATTCAGAGCA GCGGGCATCC TGAGACCCGT CCACTCCCCC TGGAACACTC CCCTCCTCCC TGTGCGAAAG 
^3001      ^3011      ^3021      ^3031      ^3041      ^3051      ^3061      ^3071      ^3081      ^3091      

TCCGGCACGT CCGAGTATCG GATGGTTCAA GATTTAAGGG AAGTAAACAA GAGAGTAGAG ACTATTCACC CAACTGTCCC TAACCCATAC ACCCTCCTCA 
^3101      ^3111      ^3121      ^3131      ^3141      ^3151      ^3161      ^3171      ^3181      ^3191      

GCCTATTACC CCCTGACCGA ATATGGTATT CTGTTTTGGA CCTGAAAGAC GCCTTTTTCT GCATCCCTCT GGCCCCTGAG TCGCAATTGA TCTTCGCATT 
^3201      ^3211      ^3221      ^3231      ^3241      ^3251      ^3261      ^3271      ^3281      ^3291      

CGAGTGGGCA GATGCGGAGG AAGGAGAATC AGGGCAACTA ACCTGGACTA GGCTACCTCA GGGTTTTAAG AACTCACCCA CCCTTTTTGA TGAAGCCCTT 
^3301      ^3311      ^3321      ^3331      ^3341      ^3351      ^3361      ^3371      ^3381      ^3391      

AACAGGGATC TGCAGGGATT TCGACTTGAT CACCCTTTCG TTTCCCTCCT TCAGTATGTA GACGACTTAC TTATTGCGGC TGATACACAA GCCGCATGCC 
^3401      ^3411      ^3421      ^3431      ^3441      ^3451      ^3461      ^3471      ^3481      ^3491      

TGAGTGCCAC CCGAGACTTA CTCATGACTT TAGCGGAGCT GGGGTACCGG GTTTCAGGGA AGAAGGCCCA GCTCTGTCAA GAGGAAGTCA CATACTTGGG 
^3501      ^3511      ^3521      ^3531      ^3541      ^3551      ^3561      ^3571      ^3581      ^3591      

GTTCAAGATC CATAAGGGAT CACGGACCCT ATCAAATAGC CGAACTCAGG CTATTCTTCA GATACCAGTA CCGAAAACCA AAAGGCAGGT GCGCGAATTT 
^3601      ^3611      ^3621      ^3631      ^3641      ^3651      ^3661      ^3671      ^3681      ^3691      

TTAGGTACAA TTGGGTACTG CAGGCTTTGG ATCCCGGGGT TTGCCGAACT TGCCCAGCCC CTATATGCGG CAACGCGGGG GGGAAATGAT CCTTTAGTGT 
^3701      ^3711      ^3721      ^3731      ^3741      ^3751      ^3761      ^3771      ^3781      ^3791      

GGGGCGAAAA AGAGGAAGAA GCGTTCCAGA GCTTGAAACT AGCCCTCACA CAGCCACCAG CTTTGGCCCT GCCCTCCCTA GATAAGCCTT TCCAGCTCTT 
^3801      ^3811      ^3821      ^3831      ^3841      ^3851      ^3861      ^3871      ^3881      ^3891      

CGTAGAAGAA ACAGGCGGGG CGGCCAAGGG AGTGCTCACA CAGGCCCTCG GTCCATGGAA AAGACCCGTA GCCTACTTAT CCAAAAGGCT GGACCCTGTG 
^3901      ^3911      ^3921      ^3931      ^3941      ^3951      ^3961      ^3971      ^3981      ^3991      

GCAGCTGGCT GGCCCCGGTG CCTCCGAGCC ATTGCGGCAG CCGCTCTTCT CACAAGAGAA GCCTCTAAAC TTACCTTCGG GCAGGACATA GAGATCACTT 
^4001      ^4011      ^4021      ^4031      ^4041      ^4051      ^4061      ^4071      ^4081      ^4091      

CGTCCCATAA CTTGGAGAGT TTGCTGCGAT CCCCTCCTGA CAGGTGGCTG ACCAATGCTC GCATCACGCA GTACCAGGTA CTGCTCCTGG ACCCTCCCCG 
^4101      ^4111      ^4121      ^4131      ^4141      ^4151      ^4161      ^4171      ^4181      ^4191      

AGTGCGCTTT AAGCAGACTG CGGCCCTCAA TCCGGCTACC CTGTTACCCG AGACAGACGA TACGCTGCCA ATACACCATT GCCTGGACAC TTTAGATTCT 
^4201      ^4211      ^4221      ^4231      ^4241      ^4251      ^4261      ^4271      ^4281      ^4291      

CTGACCTCCA CCCGCCCCGA CCTGACGGAT CAGCCCCTGG CACAAGCGGA AGCCACCCTG TTCACTGACG GCAGCAGCTA CATACGAGAC GGAAAACGAT 
^4301      ^4311      ^4321      ^4331      ^4341      ^4351      ^4361      ^4371      ^4381      ^4391      

ACACCGGTGC AGCAGTGGTA ACTCTGGACT CTGTTATTTG GGCAGAACCC CTCCCAATTG GAACATCAGC CCAGAAAGCA GAATTGATCG CACTAACAAA 
^4401      ^4411      ^4421      ^4431      ^4441      ^4451      ^4461      ^4471      ^4481      ^4491      

GGCCCTGGAA TGGAGCAAGG ACAAGAGCGT CAACATCTAC ACGGATAGCC GTTATGCATT CGCCACTCTA CACGTCCATG GGATGATCTA CAGAGAAAGG 
^4501      ^4511      ^4521      ^4531      ^4541      ^4551      ^4561      ^4571      ^4581      ^4591      

GGACTGTTGA CAGCAGGGGG GAAGGCTATC AAAAACGCCC CCGAAATTCT AGCCTTGCTG ACCGCGGTCT GGCTACCTAA ACGGGTAGCT GTGATGCATT 
^4601      ^4611      ^4621      ^4631      ^4641      ^4651      ^4661      ^4671      ^4681      ^4691      

GCAAGGGACA CCAGAAAGAC GATGCACCCA CATCAACTGG TAACCGACGG GCAGATGAGG TGGCTCGAGA AGTAGCTATA CGTCCTTTGA GCACCCAGGC 
^4701      ^4711      ^4721      ^4731      ^4741      ^4751      ^4761      ^4771      ^4781      ^4791      

CACCATCTCC GATGCACCGG ATATGCCAGA TACCGAAACC CCTCAGTATT CGCATGTAGA GGAGGCTCTA GGACATCGAC TAAGGGGGAC CAAAGACCCT 
^4801      ^4811      ^4821      ^4831      ^4841      ^4851      ^4861      ^4871      ^4881      ^4891      

GCTGGGTGGT GGCACCTTCC TGACGGGCGC CTCTTGCTTC CCAGAGCAGT GGGGAGAAAG GTCCTAGAGC AAACTCACAG AGCCACACAT TTGGGTGAAT 
^4901      ^4911      ^4921      ^4931      ^4941      ^4951      ^4961      ^4971      ^4981      ^4991      

CAAAATTGAC TGAGTTAGTT AGAAAACATT ATCTTATCTG TGGGATTTAT CGAGCAGCTA GAGATATCAC CACCCGCTGT GTGGCATGTG CCCAGGTAAA 
^5001      ^5011      ^5021      ^5031      ^5041      ^5051      ^5061      ^5071      ^5081      ^5091      

CCCTGGAGCA ACTCCCGTGG AGAAAGGGCT CAATTCCCGC ATCAGAGGTG CGGCTCCAGG GGAACACTGG GAGGTGGATT TCACAGAAAT GGTAACAGCC 
^5101      ^5111      ^5121      ^5131      ^5141      ^5151      ^5161      ^5171      ^5181      ^5191      

AAAGGGGGGT ATAAATACCT GCTTGTACTG GTAGACACAT TCTCGGGCTG GGTAGAGGCA TATCCAGCAA GAAGGGAAAC CTCCCAGGTG GTGATTAAGC 
^5201      ^5211      ^5221      ^5231      ^5241      ^5251      ^5261      ^5271      ^5281      ^5291      

ATCTAATTCA TGATATTATC CCCAGGTTTG GGTTACCGGT CCAGATCGGG TCCGACAATG GGCCGGCCTT TGTGGCAAAA GTAACACAGC AGTTGTGTGA 
^5301      ^5311      ^5321      ^5331      ^5341      ^5351      ^5361      ^5371      ^5381      ^5391      

GGCCCTAAAT GTCTCTTGGA AGCTCCATTG TGCGTACCGA CCTCAAAGCT CGGGACAGGT AGAAAGGATG AACCGAACCC TGAAGGAGAC CATCGCTAAA 
^5401      ^5411      ^5421      ^5431      ^5441      ^5451      ^5461      ^5471      ^5481      ^5491      

TTGAGGATAG AGACAGGAGG GGACTGGGTC TCCCTCCTCC CTCAGGCTTT GCTCCGGGCA CGGTGTACCC CCGGGAGGGA GGGATTGTCA CCCTTCGAGA 
^5501      ^5511      ^5521      ^5531      ^5541      ^5551      ^5561      ^5571      ^5581      ^5591      

TATTATATGG TCTCAAGCCT CCTGTAGTTC CCCGTGTAGG ATGTGACAAG CTTGCCAGCA TAACCAACCA AACCTTGCTT AAGTCCCTAC AGGCCCTCCA 
^5601      ^5611      ^5621      ^5631      ^5641      ^5651      ^5661      ^5671      ^5681      ^5691      

AGCTACTAGG TCTCTGGCTC GGGCAGCGCT GCGTGACCAA CTGCCCCAGA AAGAAGCTCA GCAAGACCGT ACCCCACTGT TCCAACCTGG TGATCTCGTC 
^5701      ^5711      ^5721      ^5731      ^5741      ^5751      ^5761      ^5771      ^5781      ^5791      

TTCGTTAAGA AGCACGACTT CCAGCAGTTG GGGCCACGGT GGGACGGACC CTACACTGTA GTCCTCAGCA CCCCCACCGC GGTAAAGGTC GCTGGGAAGA 
^5801      ^5811      ^5821      ^5831      ^5841      ^5851      ^5861      ^5871      ^5881      ^5891      

CCCCGTGGAT CCACCACTCT CGACTCAAGA AAGCTCCTGA CAACCAAGAA GAATGGACTG TCTCACCAAC CTCCGATCCG CTGAGGGTAA AGTTGACCAG 
^5901      ^5911      ^5921      ^5931      ^5941      ^5951      ^5961      ^5971      ^5981      ^5991      

GCGGGCAAAA CCCTAATTCT TCTTGTGGTT TGGTGGGGGT TTGGGACCAC TGCCGAGGGT TACCCCTTGC AGCAACTTTG GGGACTGCCT TGTGACTGCT 
^6001      ^6011      ^6021      ^6031      ^6041      ^6051      ^6061      ^6071      ^6081      ^6091      

CCGGGGGATA TGTCTTCTCC ATACCTACCT ATTACACCAA CTCCCTCGAT TGCGGTAGCT CCACCGCCTA CCTGACTTAC GGGTCCGGTA CAGGGAGTTG 
^6101      ^6111      ^6121      ^6131      ^6141      ^6151      ^6161      ^6171      ^6181      ^6191      

GGGCTGGGGA GGGGGATTTA GACAACAGTG GGAGTGTGTA TTTAAACCTA AGATCATACC CTCTGTGCAG GGGCAGCCAG GGCCCTGCCC ATCCGAATGC 
^6201      ^6211      ^6221      ^6231      ^6241      ^6251      ^6261      ^6271      ^6281      ^6291      

CTCACGATAG CTACCCAAAT GCATTCCACC TGTTATGAAA AGGCTCAGGA ATGCACCCTC CTGGGAAAAA CTTATTTTAC TGCCATCCTA CAGAAAACAA 
^6301      ^6311      ^6321      ^6331      ^6341      ^6351      ^6361      ^6371      ^6381      ^6391      

AGCTAGGTTC GTATGAAGAC GGGCCTAATA AACTGCTTCA AGCCTCTTGC ACGGGAACCA TAGGGAAACC AGTATGTTGG GACCCCGTAG CCCCTGTGTA 
^6401      ^6411      ^6421      ^6431      ^6441      ^6451      ^6461      ^6471      ^6481      ^6491      

TGTCTCTGAT GGGGGCGGTC CCACTGACAT GATTCGGGAA GAATCTGTGC GTGAAAGACT AGAGGAAATC ATCAGGCACA GCTACCCCTC CGTACAGTAT 
^6501      ^6511      ^6521      ^6531      ^6541      ^6551      ^6561      ^6571      ^6581      ^6591      

CACCCTTTAG CCCTGCCCCG ACCAAGAGGA GTAGATCTGG ATCCCCAGAC GTATGACATA CTGGAAGCTA CTCACCAGGT CCTTAACGCC ACTAATCCCC 
^6601      ^6611      ^6621      ^6631      ^6641      ^6651      ^6661      ^6671      ^6681      ^6691      

AGCTAGCAGA GAACTGCTGG CTTTGTATGA CTCTTGGAAC TCCAATCCCC GCAGCCATCC CGGCGAATGG CAATGTCACT CTCGATGGAA ATTGCAGTCT 
^6701      ^6711      ^6721      ^6731      ^6741      ^6751      ^6761      ^6771      ^6781      ^6791      

TAGCCTCCCC TTTCGGGTGC AACCCACCGG GTCAATAGAT GTCAACTGCT ATGCAGGGGA AGCAGACAAT AGGACTGGTA TACCCATAGG GTATGTTCAT 
^6801      ^6811      ^6821      ^6831      ^6841      ^6851      ^6861      ^6871      ^6881      ^6891      

TTCACTAACT GCACTAGCAT CCAGGAGGTC TCTAACGAGA CAAGTCATAT AAGAAATCTT ACGAGGCTAT GTCCTCCACC GGGTCATGTA TTTGTGTGTG 
^6901      ^6911      ^6921      ^6931      ^6941      ^6951      ^6961      ^6971      ^6981      ^6991      

GGAACAACAT GGCCTACACG GCGCTCCCTA ATAAATGGAT AGGGCTGTGC ATACTGGCAT CAATCGTACC CGACATGAGC ATAATATCCG GGGAAGAGCC 
^7001      ^7011      ^7021      ^7031      ^7041      ^7051      ^7061      ^7071      ^7081      ^7091      

TATCCCACTC CCATCCATCG AGTACACCGC TGGGCGTCAT AAGAGGGCAG TCCAGTTTAT CCCCCTGCTT GTAGGTCTAG GGATTACAGG GGCTACACTT 
^7101      ^7111      ^7121      ^7131      ^7141      ^7151      ^7161      ^7171      ^7181      ^7191      

GCTGGTGGAA CTGGGCTTGG GGTTTCCGTT CACACTTATC ACAAGCTTTC TAATCAATTG ATTGAAGATG TCCAGGCTCT TTCAGGGACC ATCAATGACC 
^7201      ^7211      ^7221      ^7231      ^7241      ^7251      ^7261      ^7271      ^7281      ^7291      

TACAGGACCA GATTGACTCC CTGGCTGAGG TTGTCTTACA AAATAGAAGG GGGTTAGACC TATTGACTGC CGAACAAGGA GGAATATGTC TCGCACTCCA 
^7301      ^7311      ^7321      ^7331      ^7341      ^7351      ^7361      ^7371      ^7381      ^7391      

GGAGAAGTGC TGTTTTTACG CCAACAAGTC GGGTATCGTA CGTGACAAGA TCCGGAAACT CCAAGAGGAC CTTATCGCGA GGAAACGTGC ACTGTACGAC 
^7401      ^7411      ^7421      ^7431      ^7441      ^7451      ^7461      ^7471      ^7481      ^7491      

AACCCCCTGT GGAACGGCTT GAACGGCTTC CTTCCATATT TGCTACCCTT GTTGGGCCCC CTGTTTGGGC TCATATTGTT CCTGACCCTC GGCCCGTGCA 
^7501      ^7511      ^7521      ^7531      ^7541      ^7551      ^7561      ^7571      ^7581      ^7591      

TCATAAAGAC CCTGACTCGC ATTATCCATG ACAAAATTCA GGCAGTAAAA ATCCTAGCAT TAGTCCCGCA GTACAAGCCA CTCCCAACAG AGATGGATAC 
^7601      ^7611      ^7621      ^7631      ^7641      ^7651      ^7661      ^7671      ^7681      ^7691      

CCTAGGTCAA TGATTTGACC AGAATATACA AGAGCAGTGG GGAATGTGGG AGGGAGCTCC GGGGGAATGT GGGAGGGAGC TCCGGGGGGG AATAGCGCTG 
^7701      ^7711      ^7721      ^7731      ^7741      ^7751      ^7761      ^7771      ^7781      ^7791      

GCTCGCTAAC TGCCATATTA GCTTCTGTAA TCATGCTTGC TTGCCTTAGC CGCCATTGTA CTTGATATAT TTCGCTGATA TCATTTCTCG GAATCGGCAT 
^7801      ^7811      ^7821      ^7831      ^7841      ^7851      ^7861      ^7871      ^7881      ^7891      

CAAGAGCAGG CTCATAAACC ATAAAAGGAA ATGTTTGTTG AAGGCAAGCA TCAGACCACT TGCACCATCC AATCACGAAC AAACACGAGA TCGAACTATC 
^7901      ^7911      ^7921      ^7931      ^7941      ^7951      ^7961      ^7971      ^7981      ^7991      

ATACTGAGCC AATGGTTGTA AAGGGCAGAT GCTATCCTCC AATGAGGGAA AATGTCATGC AACATCCTGT AAGCGGCTAT ATAAGCCAGG TGCATCTCTT 
^8001      ^8011      ^8021      ^8031      ^8041      ^8051      ^8061      ^8071      ^8081      ^8091      

GCTCGGGGTC GCCGTCCTAC ACATTGTTGT GACGTGCGGC CCAGATTCGA ATCTGTAATA AAAGCTTTTT CTTCTATATC CTCAGATTGG CAGTGAGAGG 
^8101      ^8111      ^8121      ^8131      ^8141      ^8151      ^8161      ^8171      ^8181      ^8191      

AGATTTTGTT CGTGGTGTTG GCTGGCCTAC TGGGTGGGGT AGGGATCCGG ACTGAATCCG TAGTATTTCG GTACAACATT TGGGGG
^8201      ^8211      ^8221      ^8231      ^8241      ^8251      ^8261      ^8271      ^8281

Credibility of mRNA sequence:

end-to-end_sequence_reverse_engineered_and_should_match_experiment

The organism containing this mRNA with IRES segment in its genome:

Reticuloendotheliosis virus APC-566

A promoter reported in cDNA corresponding to IRES sequence:
not tested The total number of notable open-reading frames (ORFs):
1

Notable Open-Reading Frames (ORFs; protein coding regions) in the mRNA/+RNA sequence:

ORF

ORF position:

1

Version: `0`
Originaly submitted by: Martin Mokrejš	Reviewed by: Martin Mokrejš

The abbreviated name of this ORF/gene:
gag-pol

The description of the protein encoded in this ORF:
gag-pol polyprotein

The translational frameshift (ribosome slippage) involved:
0 The ribosome read-through involved:
no

The alternative forms of this protein occur by the alternative initiation of translation:

not tested

The ORF absolute position (the base range includes START and STOP codons or their equivalents):

935-6016

Citations:

Lopez-Lastra M., Gabus C., Darlix J. L. (1997) Characterization of an internal ribosomal entry segment within the 5' leader of avian reticuloendotheliosis virus type A RNA and development of novel MLV-REV-based retroviral vectors. Hum. Gene Ther. 8(16):1855-1865

IRESs:

IRES:

Version: `1`	Last change: `2008-06-26 01:28:45`
Originaly submitted by: Martin Mokrejš	Reviewed by: Martin Mokrejš
The IRES name: `REV-A`

The IRES absolute position (the range includes START and STOP codons or their equivalents):

363-939

Conclusion:
putative_IRES

How IRES boundaries were determined:
experimentally_determined

The sequence of IRES region aligned to its secondary structure (if available):

GGGGTCGCCG TCCTACACAT TGTTGTGACG TGCGGCCCAG ATTCGAATCT GTAATAAAAG CTTTTTCTTC TATATCCTCA GATTGGCAGT GAGAGGAGAT 
^363       ^373       ^383       ^393       ^403       ^413       ^423       ^433       ^443       ^453       

TTTGTTCGTG GTGTTGGCTG GCCTACTGGG TGGGGTAGGG ATCCGGACTG AATCCGTAGT ATTTCGGTAC AACATTTGGG GGCTCGTCCG GGATTCCTCC 
^463       ^473       ^483       ^493       ^503       ^513       ^523       ^533       ^543       ^553       

CCATCGGCAG AGGTGCCTAC TGTTTCTTCG AACTCCGGCG CCGGTAAGTA AGTACTTGAT TTTGGTACCT CGCGAGGGTT TGGGAGGATC GGAGTGGCGG 
^563       ^573       ^583       ^593       ^603       ^613       ^623       ^633       ^643       ^653       

GACGCTGCCG GGAAGCTCCA CCTCCGCTCA GCAGGGGACG CCCTGGTCTG AGCTCTGTGG TATCTGATTG TTGTTGAACC GTCTCTAAGA CGGTGATACT 
^663       ^673       ^683       ^693       ^703       ^713       ^723       ^733       ^743       ^753       

ATAAGTCGTG GTTTGTGTGT TTGTTTGTTA CCTTGTGTTT GTTCGTCACT TGTCGACAGC GCCCTGCGAA TTGGTGTACC CACACCGCGC GGCTTGCGAA 
^763       ^773       ^783       ^793       ^803       ^813       ^823       ^833       ^843       ^853       

TAATACTTTG GAGAGTCTTT TGCCTCCAGT GTCTTCCGTT TGTACTCGTC CTCCTCTCCC TCTCCGGCCG GGATGGG
^863       ^873       ^883       ^893       ^903       ^913       ^923       ^933

Remarks:

Sequence 2 from patent US 6783977 and JP 2001500021-A/2.

Citations:

Last change to the database: 2019-03-18 09:32:49 GMT+1