IRESite_Id:437 summary record describing characteristics of RhPV

IRESite: The database of experimentally verified IRES structures

The nucleic acid data:

IRESite Id: `437`	Version: `4`
Originaly submitted by: Martin Mokrejš
Reviewed by: Václav Vopálenský	Last change: `2009-09-02 03:02:20`

IRESite record type:

natural_transcript

The shape of the nucleic acid molecule translated: `linear`	The quality of the mRNA/+RNA sequence: `hopefully_full-length_mRNA`
The abbreviated name of the virus/gene coding for this mRNA/+RNA molecule: `RhPV`	The genetic origin of this natural mRNA/+RNA: `viral`

The GenBankId GI:# number of exactly this mRNA/+RNA sequence:
2911298

The mRNA/+RNA description:

Rhopalosiphum padi virus, complete genome.

The mRNA/+RNA sequence represented in the +DNA notation:

GATAAAAGAA CCTATAATCC CTTCGCACAC CGCGTCACAC CGCGCTATAT GCTGCTCATT AGGAATTACG GCTCCTTTTT TGTGGATACA ATCTCTTGTA 
^1         ^11        ^21        ^31        ^41        ^51        ^61        ^71        ^81        ^91        

TACGATATAC TTATTGTTAA TTTCATTGAC CTTTACGCAA TCCTGCGTAA ATGCTGGTAT AGGGTGTACT TCGGATTTCC GAGCCTATAT TGGTTTTGAA 
^101       ^111       ^121       ^131       ^141       ^151       ^161       ^171       ^181       ^191       

AGGACCTTTA AGTCCCTACT ATACTACATT GTACTAGCGT AGGCCACGTA GGCCCGTAAG ATATTATAAC TATTTTATTA TATTTTATTC ACCCCCCACA 
^201       ^211       ^221       ^231       ^241       ^251       ^261       ^271       ^281       ^291       

TTAATCCCAG TTAAAGCTTT ATAACTATAA GTAAGCCGTG CCGAAACGTT AATCGGTCGC TAGTTGCGTA ACAACTGTTA GTTTAATTTT CCAAAATTTA 
^301       ^311       ^321       ^331       ^341       ^351       ^361       ^371       ^381       ^391       

TTTTTCACAA TTTTTAGTTA AGATTTTAGC TTGCCTTAAG CAGTCTTTAT ATCTTCTGTA TATTATTTTA AAGTTTATAG GAGCAAAGTT CGCTTTACTC 
^401       ^411       ^421       ^431       ^441       ^451       ^461       ^471       ^481       ^491       

GCAATAGCTA TTTTATTTAT TTTAGGAATA TTATCACCTC GTAATTATTT AATTATAACA TTAGCTTTAT CTATTTATAA TGTCTACGAT GTCTTGCACC 
^501       ^511       ^521       ^531       ^541       ^551       ^561       ^571       ^581       ^591       

AATTTACCAA AGTCAGTTCA ACGCATCCAA CAACATTGCA ATAGTTTAGC TTCCGAACCT AGATTAGTTA CATTACCACG TAAGGACTTT TCAACTTTTA 
^601       ^611       ^621       ^631       ^641       ^651       ^661       ^671       ^681       ^691       

TAGATTCATT TAAACACCTT GATGTGCCTC GTCCATTTAG TGTTTGCATG AGATGGTCAG AGGTGTGTGA TAATGAATTT GTGCTTGGAT ATCATAAATC 
^701       ^711       ^721       ^731       ^741       ^751       ^761       ^771       ^781       ^791       

TTCTACGTTA TATGAACAAA TGTTTATTAT GAAATATTTG TTAAAGTTTA ATTTCGAACC CCGTCAGCTT TCCATACTCA GAAAACGAAT GCAAGAGCGT 
^801       ^811       ^821       ^831       ^841       ^851       ^861       ^871       ^881       ^891       

TTGTTTTTTT TTTATAGAGG TTCCCGAACT ATTGTACCTT TGAATATGGT TTATCCCTTA TTTAAAGATA CGTTAAATAG TATCAGGCAT CCAGCGAATT 
^901       ^911       ^921       ^931       ^941       ^951       ^961       ^971       ^981       ^991       

ATACGCGGTG GGGTTTCGAA TATTTGGACG GAACAGATAT TCGTAAATTT CCATTTTTAA TATTAATGTT TTGTATTAAC ATTGAGCGTG TACCACTACG 
^1001      ^1011      ^1021      ^1031      ^1041      ^1051      ^1061      ^1071      ^1081      ^1091      

GTGTTACAAG TTTAGTGCTA ATGTAAACAT GAAGGTTGCT TTGTCTCAAT TACCTGTACT GATGGCCGCT CTTGTTAACA AGGAGAGGTT ATCAGATCAG 
^1101      ^1111      ^1121      ^1131      ^1141      ^1151      ^1161      ^1171      ^1181      ^1191      

TATGATTTTT TGTTTGTGTT ACAGAATTTC TTACATTTTT TTTTTAGAAA TTTGAGTTAC ACAAATCCAA TTGATCTAAT TGAGCATAGT TTCATTCATG 
^1201      ^1211      ^1221      ^1231      ^1241      ^1251      ^1261      ^1271      ^1281      ^1291      

AATTAGGTTT ATATTGTGCT AAATTGGTTA TGATTAGACC TATATCTACT ACTGAATACG TTTTAGGAGG AGATTGGGAT TTTGATAAAC CAGTTTTGGC 
^1301      ^1311      ^1321      ^1331      ^1341      ^1351      ^1361      ^1371      ^1381      ^1391      

ATCAAAGGAA AATTGGGATG TATATTTTCG GCTGCAGACT GTTGCGCAGT TAGGTGTTGA TTTCAACACT AACGTGCAAA TGGATCCTGC ATTTATACAA 
^1401      ^1411      ^1421      ^1431      ^1441      ^1451      ^1461      ^1471      ^1481      ^1491      

GCCCTGGACA AAATTGCCGA CACATTTGGA GAAGCAGTAA CAAGCTTGCA TTCAGTTGCT GGCGTTGCTG TGGATGGAAT TAGGAAAAAA TTTGCGTGCT 
^1501      ^1511      ^1521      ^1531      ^1541      ^1551      ^1561      ^1571      ^1581      ^1591      

ATTTATCTAT TTGTTATAAT CTGTATAGAT TGGGTTCTGG AGGTATGTCT TCACAAGACG TGCTTATGAA CTTAGTTACT ACACTTATGC AATCAGATAT 
^1601      ^1611      ^1621      ^1631      ^1641      ^1651      ^1661      ^1671      ^1681      ^1691      

GCCCGCAAAT ATTATTCCGC AACTGCGAAG TATATTTTTA ACTTCTACTG CGCAATCTGC TTCCATTGAT GCGATGGTGA TCACTAAGCT TTTAGCTCTG 
^1701      ^1711      ^1721      ^1731      ^1741      ^1751      ^1761      ^1771      ^1781      ^1791      

TGTTCATTTT CGCTCATGGT TAGCAGGATA CCAACATCCA GAGATATAGA TTCATTTATT CTCAGGTTAG ATAGAATACC AAAAGCATTT ACTGGCCTGG 
^1801      ^1811      ^1821      ^1831      ^1841      ^1851      ^1861      ^1871      ^1881      ^1891      

AGAATATATG GAAGCGGTTA GACACCGTGA CCAATGAACT GTGGACTTGG ATGGAAGTAA CAGTGTTGAA GCGTGAAAAT GTAATTCCGC GTTCTGATAT 
^1901      ^1911      ^1921      ^1931      ^1941      ^1951      ^1961      ^1971      ^1981      ^1991      

CCTTGATTCT GTTAGTAAGT GGGAAAATGA CCTTGAACAG TTGTTGACTC TTCAGAAGCA TCGAGAGATT CAAACAAATC TTGAGACGCA ACATGCCGCA 
^2001      ^2011      ^2021      ^2031      ^2041      ^2051      ^2061      ^2071      ^2081      ^2091      

GGACGTATGT ATTCCGAAGG AATACGTCTA ATGCGTATAT GTAAAGATCT GAACCTTTCT AAGGGAAACA CCGAAATCAT CGCCCGAAAT TTACCAGCCG 
^2101      ^2111      ^2121      ^2131      ^2141      ^2151      ^2161      ^2171      ^2181      ^2191      

CAAAACTCTT ATTGACTGAA GCCAATATGA GTGGTGCGGA TAAATCAAAA TTAAGAACAG AACCTGTCAT TGTTTGGTTT TCCGGCGCTT CCGGCAACGG 
^2201      ^2211      ^2221      ^2231      ^2241      ^2251      ^2261      ^2271      ^2281      ^2291      

AAAGACAGGG TTGTCGTATC CTTTCATTTT AGATATGATG AGAGTATATG GCGATCCACC AGACACTTGG CAACAAAATG TATATGCAAG AGAGCCCGAA 
^2301      ^2311      ^2321      ^2331      ^2341      ^2351      ^2361      ^2371      ^2381      ^2391      

ACTGAGTATT GGGATGGGTA TATAAACCAA GAATATATTG TTTATGATGA CTTTATCCAG ATTAAGGATT CGCAACTGAA ACCTAATCCT GAATTGTTTG 
^2401      ^2411      ^2421      ^2431      ^2441      ^2451      ^2461      ^2471      ^2481      ^2491      

AAATGATAAG ACTTGGAAAT ATGTTCCCAT ACCAGTGCCA TATGGCTTCC TTGTTGGACA AAAACAACAC ATTTGCAGAA CCTAAATTAA TTTGTTTGAC 
^2501      ^2511      ^2521      ^2531      ^2541      ^2551      ^2561      ^2571      ^2581      ^2591      

TTCTAATTTA CAACGTTTAC AGATTGAATC ATTGAATTGT CCGGAAGCGG TGTCACGTCG TATAGATTTT GCTTTTAACG TTCGTATAGT ACCAGAATAC 
^2601      ^2611      ^2621      ^2631      ^2641      ^2651      ^2661      ^2671      ^2681      ^2691      

CAAATGGAAT ATATGAGCGC TAATGGTGAT AAATTGTATA GACTAGACGC TGCCAAGGCA AGGCAAGATT TTGGAGACGT TTTATGTTTT GAAGTTTACA 
^2701      ^2711      ^2721      ^2731      ^2741      ^2751      ^2761      ^2771      ^2781      ^2791      

GATTTGATTT ATTTGACGCT TCTAGCCGTC GCAACATTTT GACAGATTTA ACTTACACGG AAGTTGTAAA GTTGTGTCAG GACAAGATGC GCGACCGCGC 
^2801      ^2811      ^2821      ^2831      ^2841      ^2851      ^2861      ^2871      ^2881      ^2891      

TAATAATTTT AATGACTATG CGAATTTTTT GGAATCATAC AGGAATAAGG GGGTTGCTCA AGTTGAGAAA CCCAAGCATG AAACTGACGA TTCTTATAAT 
^2901      ^2911      ^2921      ^2931      ^2941      ^2951      ^2961      ^2971      ^2981      ^2991      

GGAGAAACAC TCGTATTCAC GTCTACTGCA CAAGTGCATT TAGATGATGT AACGAATTTA GTGATTTTGC AGCCCAGCTA TATGAAGCGA TTGTATTGGA 
^3001      ^3011      ^3021      ^3031      ^3041      ^3051      ^3061      ^3071      ^3081      ^3091      

ATATATGCAA GCGATATTAT AGTACTAGGT TGTGGCTATC GAAAACGGAT ATGAGTGCGT TCGAAATGTT GCTTCGTGGC GATAGAGATG GTGCTTATGA 
^3101      ^3111      ^3121      ^3131      ^3141      ^3151      ^3161      ^3171      ^3181      ^3191      

TAAGTGCCTA TCTATTGTTC GCGAAACGCG TTGCGAATTA AACAGCATGA TTAACAGAGA AACTGAGGTT ATTAAAAATG TGTTTGGAAA CTATTGGCCC 
^3201      ^3211      ^3221      ^3231      ^3241      ^3251      ^3261      ^3271      ^3281      ^3291      

CTCTTTAAAG CTTGTGCAGG TGCTGCAATT GGTGCTTTTT CGTTATATTT CATATTACGA AAAAAAACAA CACCAACGAC AGCTTTTGTC AATGGTAATA 
^3301      ^3311      ^3321      ^3331      ^3341      ^3351      ^3361      ^3371      ^3381      ^3391      

AAGAGTTATT GACAACGATG CGGAAAGCAA ATGAATGTTT AGATAATGAG TGTAGAAATT GTAAAAAATG CAAGCATAAG AATGTTGATT TGTGCGTGAA 
^3401      ^3411      ^3421      ^3431      ^3441      ^3451      ^3461      ^3471      ^3481      ^3491      

ATGGTATACA AAATGCCATT GTTACGCTTT ACATATGGAA AAAGCACAAG TTAATCTCAA ATATTATACC GCTGCCGCAA TGTACCAAGA ACCGGAAATG 
^3501      ^3511      ^3521      ^3531      ^3541      ^3551      ^3561      ^3571      ^3581      ^3591      

AAAAGAGAAC GCGAACGCTG TGTTGAATTA TTAACAATTA TAGATCAATT GTGTAGTTGC GACTGCGCTA ATTGTGACGC TTGTTGTGAC GATTCACTCA 
^3601      ^3611      ^3621      ^3631      ^3641      ^3651      ^3661      ^3671      ^3681      ^3691      

CAGAAAAGTT CGAAAATGTG ATGAAGGTAT ACGATATGCC GTGTGTTTGT GTTTGTGCTC GCCTATCACA AGGATTTGAT ATGGTTGAGT TATTAGCATT 
^3701      ^3711      ^3721      ^3731      ^3741      ^3751      ^3761      ^3771      ^3781      ^3791      

GATTAAACAC TGTGGCAAAT TGGAGCCAAC ACCAATTTTG AACCCGTACT TGCGTAAATT AAGTGTAAAA TTATCCGAAG ACATAAGAGA TTTCGAAAGA 
^3801      ^3811      ^3821      ^3831      ^3841      ^3851      ^3861      ^3871      ^3881      ^3891      

ACAACAGATT ATGACCATTT GTTGAATACT CTTCAATCTC AAGAATATGA AGGAGAAGTT AATACTAAAA ATATACGTAA GGTGGCTATA CGATACCAAT 
^3901      ^3911      ^3921      ^3931      ^3941      ^3951      ^3961      ^3971      ^3981      ^3991      

CTCATGATGA TGACACTAAT ATGAGATTGC GGAAAATATT GCCGCGCGTT AAATACCAAA CGGAACCGTC TGTTGACGTA ATCAGCAGCG TAAGCCCAAC 
^4001      ^4011      ^4021      ^4031      ^4041      ^4051      ^4061      ^4071      ^4081      ^4091      

GAAAAGTGGC GATTCTATCG ACAAAATAAT TGACAATGTG AATATAGAGG AACAGAGAGC TATGCCCGAA ATGGATAAAT CGGTCGAAAC TATAGTAAAT 
^4101      ^4111      ^4121      ^4131      ^4141      ^4151      ^4161      ^4171      ^4181      ^4191      

CATGTCGTGT ACCCCAATAC GGTTTACATG ACAGCGAACA AGAATGACGG CACTGAGACC AATATTGGAC ATATAATTTT TATATGCGGC CAAGTTGCAC 
^4201      ^4211      ^4221      ^4231      ^4241      ^4251      ^4261      ^4271      ^4281      ^4291      

TCATGCCCTA CCATTATAAG ATTGCTATAG AAGAACGACA ATATCAATCT GTGAATTTAT ATTCTCGAAA GTTAATTGGA GCTAAGATAC CATCTTCGGT 
^4301      ^4311      ^4321      ^4331      ^4341      ^4351      ^4361      ^4371      ^4381      ^4391      

ATTTGACACT TTTGTGCGTT TACAAGGCAA GGATGCTATG TTAGTAGCCT TCCCTGTGAC TGTTAATAGC TTTAAGAACA TTGTTAGTCA TTTTGTTGAT 
^4401      ^4411      ^4421      ^4431      ^4441      ^4451      ^4461      ^4471      ^4481      ^4491      

ATTCAAAGTT ACCCCCTCGT TCCATCTTGT CCTGGAATAC TTGCCAAATA TTATTTTGCC AATGCGGAAA CTGAAAAGTC CCGTGTTTGC ATCAGTGCTA 
^4501      ^4511      ^4521      ^4531      ^4541      ^4551      ^4561      ^4571      ^4581      ^4591      

TTGGTGTTTC AGAACGAGAT GAAGTTGATG TAATGTCTGT ACCTGGATGC ATGGAGATAG TGCGTAATCG TGACTTCTAC ACTTACACGG CGCCAACTCG 
^4601      ^4611      ^4621      ^4631      ^4641      ^4651      ^4661      ^4671      ^4681      ^4691      

CGCCGGTGAT TGTGGAGCCG CGCTTTGCGT TGCTAACACG TGCATACAAG GAAAGATAGT TGGAATACAT GTTTCTGGAG TAGAAGGGCT TTGTAAAGGC 
^4701      ^4711      ^4721      ^4731      ^4741      ^4751      ^4761      ^4771      ^4781      ^4791      

AATTCTTCCG CGATAACCAA GCAAATGATT GAAGAATCAT TGAAGAAAAT GCCGAGCATA GCTCAATACG CCTATCCGTC ATCCGCACTT ACTGTTGAAA 
^4801      ^4811      ^4821      ^4831      ^4841      ^4851      ^4861      ^4871      ^4881      ^4891      

TGGACGCACT AGAAGAAAGC GGATCTTTTG TTTTACACAA ATATTTGCCA GGGGTATCTA TCGGAACTAC TATGCAGACG GCTATAAAGA AAACGCCTAT 
^4901      ^4911      ^4921      ^4931      ^4941      ^4951      ^4961      ^4971      ^4981      ^4991      

TCATGGACAG CTGATTGCTA CACCCAACAA ACCCGGACCT CTAGGACCAT TCAAAATAAG AGGTGAAATC ATCGATCCTC GGATTTTACA GAGAAAGAAA 
^5001      ^5011      ^5021      ^5031      ^5041      ^5051      ^5061      ^5071      ^5081      ^5091      

TATGGAAAAC CACGACCTGT ACTCGACCAA AACATCGTTA ACGATATAAG AGACGGCTTG AAGTCTGTCT ATTATCAATC ACACGAATAT GAACCAGAAT 
^5101      ^5111      ^5121      ^5131      ^5141      ^5151      ^5161      ^5171      ^5181      ^5191      

ATTATAAATA TCCAATCACT TTTGATCAAG CCATATTGGG TATCGATGGT GACCCGTTTA TCAATTCTTT GGATCGTAAT ACGGCACCTG GGTTCCCTTA 
^5201      ^5211      ^5221      ^5231      ^5241      ^5251      ^5261      ^5271      ^5281      ^5291      

CTCAACTATG AGGAAGGGAA CGAAAGGTAA AACGTTATGG TTCGGCAATG GTATGGATTA TGACCTTACC GGACCGTATG CGGTTGCGTT ACGAGCCGAC 
^5301      ^5311      ^5321      ^5331      ^5341      ^5351      ^5361      ^5371      ^5381      ^5391      

GTTGATAAAT TGGAAACAGA CATACTTAAT GGTACTCGGC CAGAAATTGT TTGGACAGAT ACACTTAAAG ATCAGAAGAT AGCAATAGCT AAAGCGAATG 
^5401      ^5411      ^5421      ^5431      ^5441      ^5451      ^5461      ^5471      ^5481      ^5491      

CAGGAAAAAC GCGTTTGTTT TCTGCCGCGC CTATGCACTA TGCAATAGCG CTTCGGAAAG TATGCGCTCC TTTTGTTGCT CATTTATCAC GTATGCGTAT 
^5501      ^5511      ^5521      ^5531      ^5541      ^5551      ^5561      ^5571      ^5581      ^5591      

TAGAAATACG ATATGTGTGG GTGTCAACCC TTTTTCTAGT GAATGGAGTG CTGTAGCACA AAAACTCTTA GTTAAAGGAC CGCACGTTAT AGCTGGCGAC 
^5601      ^5611      ^5621      ^5631      ^5641      ^5651      ^5661      ^5671      ^5681      ^5691      

TATTCTAATT TTGACGGTTC GTTACCCGCC CAACTAGTCT ATGCTGCGAC TGAAATCATG GCAGACTGGT ACGATTTAAA TTGGGATTAT GTTGAAGCTC 
^5701      ^5711      ^5721      ^5731      ^5741      ^5751      ^5761      ^5771      ^5781      ^5791      

ATAAGCGTAA TGTAGTAGGT GGTCAAGTTT TGTTGAAAGA CGAATATCTT GACTACTTAC GGCGTTTGTA TTATGAGTGT GTACATCATT TACATATAAT 
^5801      ^5811      ^5821      ^5831      ^5841      ^5851      ^5861      ^5871      ^5881      ^5891      

GAATTTTAAA CAAGGTTCGC TTATGTACTA TGTACGCAAT GGCATACCCT CTGGTTGTCC AGTTACGGCC CCACTTAATT CAATTGTCAA TCAAATGGCA 
^5901      ^5911      ^5921      ^5931      ^5941      ^5951      ^5961      ^5971      ^5981      ^5991      

TTGGTTTATT GTTGGTATCA TATTATAGAT GATCCACTCA AGCGAAATGT GAAAGAGTTT TTTGAGCATA CCTCGAGTGT TTTTTACGGA GATGATTTCG 
^6001      ^6011      ^6021      ^6031      ^6041      ^6051      ^6061      ^6071      ^6081      ^6091      

TAATGAATAT TCGAGCTGAT GTATTGGAGC AATTCAATCA AATAACAATA ACACGTGCTA TGAGTGATTA TCTGGACATG GTAATGACTG ATGAAGCAAA 
^6101      ^6111      ^6121      ^6131      ^6141      ^6151      ^6161      ^6171      ^6181      ^6191      

AACCGGTGAA TGTGTTAAAT GGAGAACTCT ACCAGAAGTT AATTTTTTAA AGAGAGCTTT TCATTATAAC ACATTTATCC AAGAATATAC AGCACCTTTG 
^6201      ^6211      ^6221      ^6231      ^6241      ^6251      ^6261      ^6271      ^6281      ^6291      

GACCTCACAG TTATATTAGA TTCTACGAAT TGGTATAAAA TTGGTAAATG TTCTGCAGTA ATCGTTGCTC GCGATACGCT TAAAGCGTGT TTGCGAGAGC 
^6301      ^6311      ^6321      ^6331      ^6341      ^6351      ^6361      ^6371      ^6381      ^6391      

TTGCGTTACA TCCGGAACAT ATCGATTCTC AATATAGATC TATTATAACA GAACTAGGCC TTCAGCTTAC CAACTTGATA CCTGGCGAGT TGTTTATACC 
^6401      ^6411      ^6421      ^6431      ^6441      ^6451      ^6461      ^6471      ^6481      ^6491      

TGATACAAGG TATTCGACGT TGCTAGCAAT CAAAAATATG GAAAGCGATG GTTTAGGACT AAACTGTGAT GCATAAGATA GTCTCATTAG AGAACCACGT 
^6501      ^6511      ^6521      ^6531      ^6541      ^6551      ^6561      ^6571      ^6581      ^6591      

AATTGGGTCA ACCCGTTAAT ACCGGTCCAC CAAGCCCTGG AAATCTCTAG TAATCTACAT GCACAAAACC GCTGTTATTC TAAATACGCG ATGTTAAATA 
^6601      ^6611      ^6621      ^6631      ^6641      ^6651      ^6661      ^6671      ^6681      ^6691      

TTATTAGTCT CATTAACAAA CCACGCAACT ATGTCAACCC GCTAATACCG GTCTAATAGG CCCTGGAAAT TGTTAATAAA TAATATTGTA ACATCAAACC 
^6701      ^6711      ^6721      ^6731      ^6741      ^6751      ^6761      ^6771      ^6781      ^6791      

ATATATATGT AATAGTCTCA TCACTAACCC ACGCAACTGT GTCAATCCGT TAATACCGGT CCAACAGGCC CTGGAAATTA GTGGCAATAA CATATATATG 
^6801      ^6811      ^6821      ^6831      ^6841      ^6851      ^6861      ^6871      ^6881      ^6891      

TCAACCCTGC TCATTGGTTT AATTGAGCGC ATTTAGTGTT GTGTGATCTT GCGCGATAAA TGCTGACGTG AAAACGTTGC GTATTGCTAC AACACTTGGT 
^6901      ^6911      ^6921      ^6931      ^6941      ^6951      ^6961      ^6971      ^6981      ^6991      

TAGCTATTTA GCTTTACTAA TCAAGACGCC GTCGTGCAGC CCACAAAAGT CTAGATACGT CACAGGAGAG CATACGCTAG GTCGCGTTGA CTATCCTTAT 
^7001      ^7011      ^7021      ^7031      ^7041      ^7051      ^7061      ^7071      ^7081      ^7091      

ATATGACCTG CAAATATAAA CGAAAACACT ACAACAAAAA TACAACAGCA AATCCTTTCT TTTAGTTCGG AAGGTGAATC CCCGTCGTCA TCCACAGTTT 
^7101      ^7111      ^7121      ^7131      ^7141      ^7151      ^7161      ^7171      ^7181      ^7191      

TAGCACCACT CAAATTGCAA GATCCTATAT TGGATTGCGC GAGAGATGGA AAAACTCATA CAGTTAATTC TTTTCTTGAG AGGCCTATAA ACTTTAGAAC 
^7201      ^7211      ^7221      ^7231      ^7241      ^7251      ^7261      ^7271      ^7281      ^7291      

CGCGACTTGG AGTAATCAAC CAGCTGGCGA AAGGTTATTT TCTTTTAATT ACCCTTCTAA TGTTGTTACG AATCCTATGT ACAGCAGAAA ATTGCAAAAT 
^7301      ^7311      ^7321      ^7331      ^7341      ^7351      ^7361      ^7371      ^7381      ^7391      

TTTCTAGGTT TGCGTGCTGA TTTAGTTGTT CGCGTTCAAG TCAACGCTCA ACCATTTCAT GCAGGTAGAT TAATGCTGTC CTGGACTCCG TTTCTGGATT 
^7401      ^7411      ^7421      ^7431      ^7441      ^7451      ^7461      ^7471      ^7481      ^7491      

ATTTGGGAAC TAATCGAAAA TATTATTATA CAGATCCATC ATCGACCTTT TTAACCTCCG TTAGTGGTAA CCCTCGCGTT GAGATAGATT TATCTACTAC 
^7501      ^7511      ^7521      ^7531      ^7541      ^7551      ^7561      ^7571      ^7581      ^7591      

AACTGAGGCC ACCATGACTA TACCGTTTGT CTCGCCTTTT CTGTACTACA ATCTAGTGAC GGGGTCAGGC GATATTGGAA CTTTCCAATT AATCGTTTAT 
^7601      ^7611      ^7621      ^7631      ^7641      ^7651      ^7661      ^7671      ^7681      ^7691      

TCTCCGTTAG TCGATTTAGT CTCGGGAGGT AATATAGACT ATACGATATG GGTTAATATG ACAAACGTAA GAACAGAGTT TCCAACCGGT ATGCCAACTT 
^7701      ^7711      ^7721      ^7731      ^7741      ^7751      ^7761      ^7771      ^7781      ^7791      

CTATCGCTCA GGTGGGAGAA GAAGGCAGTA CCCAGCAAAA ACAAGGGTTC GTCACTCGCC AGTCTGAAGC TTATTCTACT ATCATGGAAC CACTCACCAA 
^7801      ^7811      ^7821      ^7831      ^7841      ^7851      ^7861      ^7871      ^7881      ^7891      

AATACCTGGT GTTGGTCAAT TAATAGGATA TGCTAAATCT GGCGTTGACG CGCTCCATGC TGTTGCTTCA ACTCACGGTT GGTCTAAGCC ATTGAATCCG 
^7901      ^7911      ^7921      ^7931      ^7941      ^7951      ^7961      ^7971      ^7981      ^7991      

GCTGATATGC AATTATTTAA ACAAGCCCCA TCAAAATTCA TGTGTAATTC AGATGGTTCG GATATGGCAA CTAATTTGGG TTTAACAAGC CAAAATGAAA 
^8001      ^8011      ^8021      ^8031      ^8041      ^8051      ^8061      ^8071      ^8081      ^8091      

TTGAACATCT CCAATCTCTC TTTCGCACTG ATTCTGATGA AATGTCTATT GATTACGTAG CAAGAACTTA CAATTACGTT AGTAGATTCA ATTGGATTAA 
^8101      ^8111      ^8121      ^8131      ^8141      ^8151      ^8161      ^8171      ^8181      ^8191      

AGGAAATGGT CCAGGTACTG TTCTGTATAG TCATGTGGTC TCACCCACCT CATGGTTTAC AGAAGTTGGT ATAACTGGAT TGTCAATACC TCATTTATAT 
^8201      ^8211      ^8221      ^8231      ^8241      ^8251      ^8261      ^8271      ^8281      ^8291      

TTTGCCGCCA GCAATTTTGT TTTATGGCGT GGTGGTATGA ATATAAAACT TAAATTTGTC AAAACGAAGT TCCACTCTGG ACGAGTGCGT ATTTTATACG 
^8301      ^8311      ^8321      ^8331      ^8341      ^8351      ^8361      ^8371      ^8381      ^8391      

TACCCGGATT CTTTGGTGGG ACTTTGCCTA CTAATTTCGA AACCGACGCT AATTACTCGA CTGTTGTAGA TCTTAGATCT GATACAGACG TTGAATTTAA 
^8401      ^8411      ^8421      ^8431      ^8441      ^8451      ^8461      ^8471      ^8481      ^8491      

CGTCCCATAT GTAGCTACAG TTCCTTGGTT ACATGTCAAC TCTACACCTT GGGTCACTGC ATTTTCGCAG ATCCATGCGT GTAGGTCGAT TGTCGTCGAG 
^8501      ^8511      ^8521      ^8531      ^8541      ^8551      ^8561      ^8571      ^8581      ^8591      

GTTCTTAATG AGCTAGTTAA CACATCTACC GTATCTGATA CTATTGAAGT TTTAGTGGAA GTATGTGCTG CTGAAGATAT TGAATTTGCC ATTCCTATAG 
^8601      ^8611      ^8621      ^8631      ^8641      ^8651      ^8661      ^8671      ^8681      ^8691      

TGCCATCTTT AACACCGCGT GCTGCCCCGC AAGGTTCATC TCGTCGTACT GCTTACGATT TGATCACAAG CATTGCGCAA GTAGGAACTG ATACGGGAGA 
^8701      ^8711      ^8721      ^8731      ^8741      ^8751      ^8761      ^8771      ^8781      ^8791      

TACACCACTC GAGGTATCTC GTGAAGAGCC AACAACTTTT AACGATGTAC CTCTCCAACC AACTACGACT ACATTTAACG CATCTATGTT GATGATGGGG 
^8801      ^8811      ^8821      ^8831      ^8841      ^8851      ^8861      ^8871      ^8881      ^8891      

GAAAAAGTTA CGTCATTTAG ACAGCTTATT AAGCGTTTTA GTGCCATAAC CCCGCCTACT CAAAATAGGT ACTGGGAATT TACACAACCA TTTTGGATTA 
^8901      ^8911      ^8921      ^8931      ^8941      ^8951      ^8961      ^8971      ^8981      ^8991      

ATACTAACAG GTTAGAGGGT GTAACTCAAG AGGGTTCTTC AGATATAGAT GGTATATCTT GGTTCGCTAG TTTATATGCA TTCTACCGTG GTAGTATGCG 
^9001      ^9011      ^9021      ^9031      ^9041      ^9051      ^9061      ^9071      ^9081      ^9091      

TTACAAAATA GCGCCCCTTT CAAATGCATC ACCTTTAGTT GTTGCACTCA AACCAAACTC ACTCTATTCT GGAGTGCGTG TTATAGATAC AAATGGTACG 
^9101      ^9111      ^9121      ^9131      ^9141      ^9151      ^9161      ^9171      ^9181      ^9191      

TGGACTTATC CAGATTACAA AGGCGCTGAG GTTTTCATGA CACCTAATGA AGGTATTCAT GAGCTCAGTA TTCCATACTA TAGTTCCTAT CCCGTTACCC 
^9201      ^9211      ^9221      ^9231      ^9241      ^9251      ^9261      ^9271      ^9281      ^9291      

TTACCACGTA TAATTCTACT GATTCGGATG TGCTCGATGC AAGAAACGGT TTTAACCGTG TTATTGCTCG TTTTCATTCT GATACTAGTG CATACGTTTA 
^9301      ^9311      ^9321      ^9331      ^9341      ^9351      ^9361      ^9371      ^9381      ^9391      

TCGGGCTGCT GGTGATGATT TTAGTTTCGG CTTTCTGCTC GGAGCTCCTA TAGTGATCAT AGGTCTTAGT AGCGTTCGTT TGATATGCGT TAAATATCAC 
^9401      ^9411      ^9421      ^9431      ^9441      ^9451      ^9461      ^9471      ^9481      ^9491      

AGGGTTTTTA GTCCCTTGGA AAACTATACG TCTGATATGC GTAAATTATC AAATGAGTAA CTGTCTCGAA TTAAAACAGT CACTTGATAG AGTGTTTCTA 
^9501      ^9511      ^9521      ^9531      ^9541      ^9551      ^9561      ^9571      ^9581      ^9591      

TCTGACTTAC AAACCGTTTA CGGAGGATAT GATGTACCCG CCGCATTTGA AGCGTCGCTA GGCCTAGTTT GTAAGTTAGT TTAATTATTA TTAAGGACCA 
^9601      ^9611      ^9621      ^9631      ^9641      ^9651      ^9661      ^9671      ^9681      ^9691      

AAAACAATAT AAAATACAAA ACAAAAAAAA ATTTATCATT AGTTTATTTT AGGAAATAAT TTTAAGCAAG CCTGGCGCGC CAAAATTGGA GTTTAAAGAC 
^9701      ^9711      ^9721      ^9731      ^9741      ^9751      ^9761      ^9771      ^9781      ^9791      

CCTATAAAAA TGCTGGCGTT ATACACCCCT TGTTCCTTCG AGGCGGGCCC TCATGTGTTC CACATGCAGA CTTAAAGAAG TCTACCCCCG GCCCGTCTGG 
^9801      ^9811      ^9821      ^9831      ^9841      ^9851      ^9861      ^9871      ^9881      ^9891      

GGGATCTAAG TTTTTATCAG TTTTCTTAGA CCTGACCTTA ATTGGTTGGG AGGCGTAACT GTTACTTTAT GTCTGGCGAA CATGAGAGGT GCTGTAATGT 
^9901      ^9911      ^9921      ^9931      ^9941      ^9951      ^9961      ^9971      ^9981      ^9991      

CATTTTTCGT C
^10001     ^10011

Credibility of mRNA sequence:

end-to-end_sequence_reverse_engineered_and_should_match_experiment

The organism containing this mRNA with IRES segment in its genome:

Rhopalosiphum padi virus

A promoter reported in cDNA corresponding to IRES sequence:
yes The total number of notable open-reading frames (ORFs):
2

Summary of possible issues when IRES cDNA is experimentally transcribed in vivo:

Summary of experiments studying integrity of the in vivo transcripts in a particular host:

Integrity (uniformity) of mRNA tested using Northern-blot:
not_tested

Integrity (uniformity) of mRNA tested using RNase protection:
not_tested

Integrity (uniformity) of mRNA tested using 5'-RACE:
not_tested

Integrity (uniformity) of mRNA tested using primer extension :
not_tested

Integrity (uniformity) of mRNA tested using RT-PCR:
not_tested

Integrity (uniformity) of mRNA tested using real-time quantitative polymerase chain reaction (rtqPCR):
not_tested

Integrity (uniformity) of mRNA tested using RNAi:
not_tested

Integrity (uniformity) of mRNA tested using S1 nuclease mapping:
not_tested

Cryptic promoter presence was confirmed by expression from a promoter-less plasmid:
weak_promoter_confirmed

Cryptic promoter presence was confirmed in an experimental setup involving inducible promoter:
not_tested

Integrity (uniformity) of mRNA molecules or possible promoter presence expressed in vivo was tested using another method, please specify in Remarks:
not_tested

The organism used:

Spodoptera frugiperda Sf-21

Notable Open-Reading Frames (ORFs; protein coding regions) in the mRNA/+RNA sequence:

ORF

ORF position:

1

Version: `0`
Originaly submitted by: Martin Mokrejš	Reviewed by: Václav Vopálenský

The abbreviated name of this ORF/gene:
polyprotein

The description of the protein encoded in this ORF:
non-structural polyprotein

The translational frameshift (ribosome slippage) involved:
0 The ribosome read-through involved:
no

The alternative forms of this protein occur by the alternative initiation of translation:

not tested

The ORF absolute position (the base range includes START and STOP codons or their equivalents):

580-6576

ORF

ORF position:

2

Version: `0`
Originaly submitted by: Martin Mokrejš	Reviewed by: Václav Vopálenský

The abbreviated name of this ORF/gene:
polyprotein

The description of the protein encoded in this ORF:
structural polyprotein

The translational frameshift (ribosome slippage) involved:
0 The ribosome read-through involved:
no

The alternative forms of this protein occur by the alternative initiation of translation:

not tested

The ORF absolute position (the base range includes START and STOP codons or their equivalents):

7107-9560

Remarks:

The second ORF is not initiated by a +1 frameshift as proposed originally but the first two aminoacid residues
come from 'CCTGCA' in Domier et al. (2000), Figure 6.

The cryptic promoter activity in Spodoptera frugiperda Sf21 cells was shown by Wu et al. (2008), and
postulated already in Wu et al. (2007).

Please refer also to patent no. WO 02/12522.

Citations:

Woolaway K. E., Lazaridis K., Belsham G. J., Carter M. J., Roberts L. O. (2001) The 5' untranslated region of Rhopalosiphum padi virus contains an internal ribosome entry site which functions efficiently in mammalian, plant, and insect translation systems. J. Virol. 75(21):10244-10249

Domier L. L., McCoppin N. K., D'Arcy C. J. (2000) Sequence requirements for translation initiation of Rhopalosiphum padi virus ORF2. Virology. 268(2):264-271

Wu YJ, Teng CY, Chen YJ, Chen SC, Chen YJ, Lin YT, Wu TY (2008) Internal ribosome entry site of Rhopalosiphum padi virus is functional in mammalian cells and has cryptic promoter activity in baculovirus-infected Sf21 cells. Acta Pharmacol. Sin. 8(29):965-974

Wu TY, Wu CY, Chen YJ, Chen CY, Wang CH (2007) The 5' untranslated region of Perina nuda virus (PnV) possesses a strong internal translation activity in baculovirus-infected insect cells. FEBS Lett. 581(16):3120-3126

IRESs:

IRES:

Version: `5`	Last change: `2009-09-02 02:48:02`
Originaly submitted by: Martin Mokrejš	Reviewed by: Václav Vopálenský
The IRES name: `RhPV_5NCR`

The IRES absolute position (the range includes START and STOP codons or their equivalents):

1-579

Conclusion:
putative_IRES

How IRES boundaries were determined:
experimentally_determined

The sequence of IRES region aligned to its secondary structure (if available):

GATAAAAGAA CCTATAATCC CTTCGCACAC CGCGTCACAC CGCGCTATAT GCTGCTCATT AGGAATTACG GCTCCTTTTT TGTGGATACA ATCTCTTGTA 
^1         ^11        ^21        ^31        ^41        ^51        ^61        ^71        ^81        ^91        

TACGATATAC TTATTGTTAA TTTCATTGAC CTTTACGCAA TCCTGCGTAA ATGCTGGTAT AGGGTGTACT TCGGATTTCC GAGCCTATAT TGGTTTTGAA 
^101       ^111       ^121       ^131       ^141       ^151       ^161       ^171       ^181       ^191       

AGGACCTTTA AGTCCCTACT ATACTACATT GTACTAGCGT AGGCCACGTA GGCCCGTAAG ATATTATAAC TATTTTATTA TATTTTATTC ACCCCCCACA 
^201       ^211       ^221       ^231       ^241       ^251       ^261       ^271       ^281       ^291       

TTAATCCCAG TTAAAGCTTT ATAACTATAA GTAAGCCGTG CCGAAACGTT AATCGGTCGC TAGTTGCGTA ACAACTGTTA GTTTAATTTT CCAAAATTTA 
^301       ^311       ^321       ^331       ^341       ^351       ^361       ^371       ^381       ^391       

TTTTTCACAA TTTTTAGTTA AGATTTTAGC TTGCCTTAAG CAGTCTTTAT ATCTTCTGTA TATTATTTTA AAGTTTATAG GAGCAAAGTT CGCTTTACTC 
^401       ^411       ^421       ^431       ^441       ^451       ^461       ^471       ^481       ^491       

GCAATAGCTA TTTTATTTAT TTTAGGAATA TTATCACCTC GTAATTATTT AATTATAACA TTAGCTTTAT CTATTTATA
^501       ^511       ^521       ^531       ^541       ^551       ^561       ^571

Remarks:

Sequence 1 from Patent WO0212522. The IRES is also functional in wheat-germ lysates (Woolaway et al., (2001),
Figure 2), also in Drosophila SL2 cell extracts (Woolaway et al., (2001), Figure 3), in Spodoptera frugiperda
Sf21 cells (Royall et al., (2004)). In contrast, EMCV IRES is functional only in mammalian cells or cell
extracts.

Robert and Groppeli (2009) reported that the 5'-UTR IRES is largely unstructured.

Wu et al. (2007) reported that the 5NTR IRES was functional in in baculovirus-infected Sf21 cells.

Citations:

Domier L. L., McCoppin N. K., D'Arcy C. J. (2000) Sequence requirements for translation initiation of Rhopalosiphum padi virus ORF2. Virology. 268(2):264-271

Royall E., Woolaway K. E., Schacherl J., Kubick S., Belsham G. J., Roberts L. O. (2004) The Rhopalosiphum padi virus 5' internal ribosome entry site is functional in Spodoptera frugiperda 21 cells and in their cell-free lysates: implications for the baculovirus expression system. J. Gen. Virol. 85(Pt 6):1565-1569

Roberts LO, Groppelli E (2009) An atypical IRES within the 5' UTR of a dicistrovirus genome. Virus Res. 139(2):157-165

IRES:

Version: `1`	Last change: `2009-08-29 18:26:08`
Originaly submitted by: Martin Mokrejš	Reviewed by: Václav Vopálenský
The IRES name: `RhPV_IGR`

The IRES absolute position (the range includes START and STOP codons or their equivalents):

6875-7106

Conclusion:
strongly_supported_IRES

How IRES boundaries were determined:
experimentally_determined

5'-end of IRES relative to last base of the STOP codon of the upstream ORF: `299`	3'-end of IRES relative to last base of the STOP codon of the upstream ORF: `530`
5'-end of IRES relative to first base of the START codon of the downstream ORF: `-232`	3'-end of IRES relative to first base of the START codon of the downstream ORF: `-1`

The sequence of IRES region aligned to its secondary structure (if available):

AAATTAGTGG CAATAACATA TATATGTCAA CCCTGCTCAT TGGTTTAATT GAGCGCATTT AGTGTTGTGT GATCTTGCGC GATAAATGCT GACGTGAAAA 
^6875      ^6885      ^6895      ^6905      ^6915      ^6925      ^6935      ^6945      ^6955      ^6965      

CGTTGCGTAT TGCTACAACA CTTGGTTAGC TATTTAGCTT TACTAATCAA GACGCCGTCG TGCAGCCCAC AAAAGTCTAG ATACGTCACA GGAGAGCATA 
^6975      ^6985      ^6995      ^7005      ^7015      ^7025      ^7035      ^7045      ^7055      ^7065      

CGCTAGGTCG CGTTGACTAT CCTTATATAT GA
^7075      ^7085      ^7095      ^7105

Remarks:

The IRES is followed by CCU translation initiation codon. Localization of RhPV_IGR IRES containing RNA in
80S ribosomal fraction was shown in Domier et al. (2003), Figure 3.

Citations:

Domier L. L., McCoppin N. K., D'Arcy C. J. (2000) Sequence requirements for translation initiation of Rhopalosiphum padi virus ORF2. Virology. 268(2):264-271

Groppelli E, Belsham GJ, Roberts LO (2007) Identification of minimal sequences of the Rhopalosiphum padi virus 5' untranslated region required for internal initiation of protein synthesis in mammalian, plant and insect translation systems. J. Gen. Virol. 5(88):1583-1588

IRES trans-acting factor (ITAFS):

IRES trans-acting factor (ITAF):

Version: `0`
Originaly submitted by: Martin Mokrejš	Reviewed by: Václav Vopálenský

Type of the interaction between ITAF and the RNA subject to translation:
direct_interaction_with_rna

ITAF protein characteristics:

Version: `0`
Originaly submitted by: Martin Mokrejš	Reviewed by: Václav Vopálenský

ITAF abbreviated name:
eIF1

ITAF fullname:
eukaryotic translation initiation factor 1

ITAF description (long):
eukaryotic translation initiation factor 1

3.1.2. Organisms or in vitro systems where this ITAF was functionally studied:

Organism or in vitro system where ITAF was shown:

Necessity of ITAF for translation in this particular organism or system:
required_but_available_internally

Method used to demonstrate ITAF effect:
in_vitro In vitro system used to demonstrate ITAF effect:
other

Citations:

Terenin I. M., Dmitriev S. E., Andreev D. E., Royall E., Belsham G. J., Roberts L. O., Shatsky I. N. (2005) A cross-kingdom internal ribosome entry site reveals a simplified mode of internal ribosome entry. Mol. Cell. Biol. 25(17):7879-7888

IRES trans-acting factor (ITAF):

Version: `0`
Originaly submitted by: Martin Mokrejš	Reviewed by: Václav Vopálenský

Type of the interaction between ITAF and the RNA subject to translation:
direct_interaction_with_rna

ITAF protein characteristics:

Version: `0`
Originaly submitted by: Martin Mokrejš	Reviewed by: Václav Vopálenský

ITAF abbreviated name:
eIF2

ITAF fullname:
eukaryotic translation initiation factor 2

ITAF description (long):
eukaryotic translation initiation factor 2

3.2.2. Organisms or in vitro systems where this ITAF was functionally studied:

Organism or in vitro system where ITAF was shown:

Necessity of ITAF for translation in this particular organism or system:
required_but_available_internally

Method used to demonstrate ITAF effect:
in_vitro In vitro system used to demonstrate ITAF effect:
other

Citations:

IRES trans-acting factor (ITAF):

Version: `0`
Originaly submitted by: Martin Mokrejš	Reviewed by: Václav Vopálenský

Type of the interaction between ITAF and the RNA subject to translation:
direct_interaction_with_rna

ITAF protein characteristics:

Version: `0`
Originaly submitted by: Martin Mokrejš	Reviewed by: Václav Vopálenský

ITAF abbreviated name:
eIF3

ITAF fullname:
eukaryotic translation initiation factor 3

ITAF description (long):
eukaryotic translation initiation factor 3

3.3.2. Organisms or in vitro systems where this ITAF was functionally studied:

Organism or in vitro system where ITAF was shown:

Necessity of ITAF for translation in this particular organism or system:
required_but_available_internally

Method used to demonstrate ITAF effect:
in_vitro In vitro system used to demonstrate ITAF effect:
other

Citations:

IRES trans-acting factor (ITAF):

Version: `0`
Originaly submitted by: Martin Mokrejš	Reviewed by: Václav Vopálenský

Type of the interaction between ITAF and the RNA subject to translation:
direct_interaction_with_rna

ITAF protein characteristics:

Version: `0`
Originaly submitted by: Martin Mokrejš	Reviewed by: Václav Vopálenský

ITAF abbreviated name:
eIF1A

ITAF fullname:
eukaryotic translation initiation factor 1A

ITAF description (long):
eukaryotic translation initiation factor 1A

3.4.2. Organisms or in vitro systems where this ITAF was functionally studied:

Organism or in vitro system where ITAF was shown:

Necessity of ITAF for translation in this particular organism or system:
stimulatory

Method used to demonstrate ITAF effect:
in_vitro In vitro system used to demonstrate ITAF effect:
other

Citations:

IRES trans-acting factor (ITAF):

Version: `0`
Originaly submitted by: Martin Mokrejš	Reviewed by: Václav Vopálenský

Type of the interaction between ITAF and the RNA subject to translation:
direct_interaction_with_rna

ITAF protein characteristics:

Version: `1`	Last change: `2009-08-18 16:32:07`
Originaly submitted by: Martin Mokrejš	Reviewed by: Martin Mokrejš

ITAF abbreviated name:
eIF4G

ITAF fullname:
eukaryotic translation initiation factor 4G

ITAF description (long):
eIF4G is the scaffolding protein bridging together the cap-binding protein eIF4E with other proteins of the initiating ribosome

3.5.2. Organisms or in vitro systems where this ITAF was functionally studied:

Organism or in vitro system where ITAF was shown:

Necessity of ITAF for translation in this particular organism or system:
stimulatory

Method used to demonstrate ITAF effect:
in_vitro In vitro system used to demonstrate ITAF effect:
other

Citations:

IRES trans-acting factor (ITAF):

Version: `0`
Originaly submitted by: Martin Mokrejš	Reviewed by: Václav Vopálenský

Type of the interaction between ITAF and the RNA subject to translation:
direct_interaction_with_rna

ITAF protein characteristics:

Version: `0`
Originaly submitted by: Martin Mokrejš	Reviewed by: Václav Vopálenský

ITAF abbreviated name:
eIF4A

ITAF fullname:
eukaryotic translation initiation factor 4A

ITAF description (long):
eukaryotic translation initiation factor 4A

3.6.2. Organisms or in vitro systems where this ITAF was functionally studied:

Organism or in vitro system where ITAF was shown:

Necessity of ITAF for translation in this particular organism or system:
stimulatory

Method used to demonstrate ITAF effect:
in_vitro In vitro system used to demonstrate ITAF effect:
other

Citations:

Last change to the database: 2019-03-18 09:32:49 GMT+1