The nucleic acid data:
IRESite Id: 619 Version: 0
Originaly submitted by: Martin Mokrejš Submission date: 2009-08-29 20:11:46
Reviewed by: Martin Mokrejš
IRESite record type:
  natural_transcript
The shape of the nucleic acid molecule translated:
  linear
The quality of the mRNA/+RNA sequence:
  hopefully_full-length_mRNA
The abbreviated name of the virus/gene coding for this mRNA/+RNA molecule:
  ALPV
The genetic origin of this natural mRNA/+RNA:
  viral
The GenBankId GI:# number of exactly this mRNA/+RNA sequence:
24431318
The mRNA/+RNA description: 
Aphid lethal paralysis virus, complete genome.
The mRNA/+RNA sequence represented in the +DNA notation:


Credibility of mRNA sequence:
  reverse_engineered_fragment_and_the_rest_is_a_guess
The organism containing this mRNA with IRES segment in its genome:
Aphid lethal paralysis virus
A promoter reported in cDNA corresponding to IRES sequence:
  not tested
The total number of notable open-reading frames (ORFs):
  2
Notable Open-Reading Frames (ORFs; protein coding regions) in the mRNA/+RNA sequence:
ORF
ORF position:   1
Version: 0
Originaly submitted by: Martin Mokrejš Reviewed by: Martin Mokrejš
The abbreviated name of this ORF/gene:
NS
The description of the protein encoded in this ORF:
non-structural polyprotein
The translational frameshift (ribosome slippage) involved:
  0
The ribosome read-through involved:
  no
The alternative forms of this protein occur by the alternative initiation of translation:
  not tested
The ORF absolute position (the base range includes START and STOP codons or their equivalents):
  540-6647
ORF
ORF position:   2
Version: 0
Originaly submitted by: Martin Mokrejš Reviewed by: Martin Mokrejš
The abbreviated name of this ORF/gene:
CP
The description of the protein encoded in this ORF:
capsid protein
The translational frameshift (ribosome slippage) involved:
  0
The ribosome read-through involved:
  no
The alternative forms of this protein occur by the alternative initiation of translation:
  not tested
The ORF absolute position (the base range includes START and STOP codons or their equivalents):
  6820-9243
Citations:
Van Munster M, Dullemans AM, Verbeek M, Van Den Heuvel JF, Clérivet A, Van Der Wilk F (2002) Sequence analysis and genomic organization of Aphid lethal paralysis virus: a new member of the family Dicistroviridae. J. Gen. Virol. 12(83):3131-3138
IRESs:
IRES:
Version: 2 Last change: 2009-08-29 21:27:18
Originaly submitted by: Martin Mokrejš Reviewed by: Martin Mokrejš
The IRES name:
  ALPV_IGRpred
The IRES absolute position (the range includes START and STOP codons or their equivalents):
  6639-6822
Conclusion:
  putative_IRES
How IRES boundaries were determined:
guessed
The sequence of IRES region aligned to its secondary structure (if available):


Remarks:
The IRES was NOT characterized experimentally. The presumed IRES region was taken over from Nakashima and
Uchiumi (2009) from Table 1.
Citations:
Van Munster M, Dullemans AM, Verbeek M, Van Den Heuvel JF, Clérivet A, Van Der Wilk F (2002) Sequence analysis and genomic organization of Aphid lethal paralysis virus: a new member of the family Dicistroviridae. J. Gen. Virol. 12(83):3131-3138
Nakashima N, Uchiumi T (2009) Functional analysis of structural motifs in dicistroviruses. Virus Res. 2(139):137-147
Last change to the database: 2015-04-16 16:45:23 GMT+1