The nucleic acid data:
IRESite Id: 626 Version: 0
Originaly submitted by: Martin Mokrejš Submission date: 2009-08-29 21:23:54
Reviewed by: Martin Mokrejš
IRESite record type:
  natural_transcript
The shape of the nucleic acid molecule translated:
  linear
The quality of the mRNA/+RNA sequence:
  both_UTRs_incomplete
The abbreviated name of the virus/gene coding for this mRNA/+RNA molecule:
  TrV
The genetic origin of this natural mRNA/+RNA:
  viral
The GenBankId GI:# number of exactly this mRNA/+RNA sequence:
6003484
The mRNA/+RNA description: 
Triatoma virus nonstructural protein precursor and capsid protein precursor, genes, partial cds.
The mRNA/+RNA sequence represented in the +DNA notation:


Credibility of mRNA sequence:
  unknown
The organism containing this mRNA with IRES segment in its genome:
Triatoma virus
A promoter reported in cDNA corresponding to IRES sequence:
  not tested
The total number of notable open-reading frames (ORFs):
  2
Notable Open-Reading Frames (ORFs; protein coding regions) in the mRNA/+RNA sequence:
ORF
ORF position:   1
Version: 0
Originaly submitted by: Martin Mokrejš Reviewed by: Martin Mokrejš
The abbreviated name of this ORF/gene:
NS
The description of the protein encoded in this ORF:
non-structural polyprotein
The translational frameshift (ribosome slippage) involved:
  0
The ribosome read-through involved:
  no
The alternative forms of this protein occur by the alternative initiation of translation:
  not tested
The ORF absolute position (the base range includes START and STOP codons or their equivalents):
  549-5936
ORF
ORF position:   2
Version: 0
Originaly submitted by: Martin Mokrejš Reviewed by: Martin Mokrejš
The abbreviated name of this ORF/gene:
CP
The description of the protein encoded in this ORF:
capsid protein
The translational frameshift (ribosome slippage) involved:
  0
The ribosome read-through involved:
  no
The alternative forms of this protein occur by the alternative initiation of translation:
  not tested
The ORF absolute position (the base range includes START and STOP codons or their equivalents):
  6109-8715
Citations:
Czibener C, La Torre JL, Muscio OA, Ugalde RA, Scodeller EA (2000) Nucleotide sequence analysis of Triatoma virus shows that it is a member of a novel group of insect RNA viruses. J. Gen. Virol. 81(4):1149-1154
IRESs:
IRES:
Version: 0
Originaly submitted by: Martin Mokrejš Reviewed by: Martin Mokrejš
The IRES name:
  TRV_5NTR
The IRES absolute position (the range includes START and STOP codons or their equivalents):
  1-694
Conclusion:
  weakly_supported_IRES
How IRES boundaries were determined:
experimentally_determined
The sequence of IRES region aligned to its secondary structure (if available):


Remarks:
Czibener et al. (2005) studied both the 5'-NTR IRES and IGR IRES in Xenopus oocytes, human BHK and C6/36 cells
using monocistronic and bicistronic transcripts.
Citations:
Nakashima N, Sasaki J, Toriyama S (1999) Determining the nucleotide sequence and capsid-coding region of himetobi P virus: a member of a novel group of RNA viruses that infect insects. Arch. Virol. 10(144):2051-2058
Czibener C, Alvarez D, Scodeller E, Gamarnik AV (2005) Characterization of internal ribosomal entry sites of Triatoma virus. J. Gen. Virol. 86(8):2275-2280
IRES:
Version: 1 Last change: 2009-08-29 22:27:53
Originaly submitted by: Martin Mokrejš Reviewed by: Martin Mokrejš
The IRES name:
  TrV_IGR
The IRES absolute position (the range includes START and STOP codons or their equivalents):
  5929-6149
Conclusion:
  weakly_supported_IRES
How IRES boundaries were determined:
experimentally_determined
The sequence of IRES region aligned to its secondary structure (if available):


Remarks:
The coordinates of IRES region were taken over from Nakashima and Uchiumi (2009) from Table 1 are 5925-6111
instead.

Our coordinates are based on primer sequences described in the original publication of Czibener et
al. (2005) who studied both the 5'-NTR IRES and IGR IRES in Xenopus oocytes, human BHK and C6/36 cells
using monocistronic and bicistronic transcripts.
Citations:
Nakashima N, Sasaki J, Toriyama S (1999) Determining the nucleotide sequence and capsid-coding region of himetobi P virus: a member of a novel group of RNA viruses that infect insects. Arch. Virol. 144(10):2051-2058
Czibener C, Alvarez D, Scodeller E, Gamarnik AV (2005) Characterization of internal ribosomal entry sites of Triatoma virus. J. Gen. Virol. 86(8):2275-2280
Last change to the database: 2015-04-16 16:45:23 GMT+1