The nucleic acid data:
IRESite Id: 627 Version: 0
Originaly submitted by: Martin Mokrejš Submission date: 2009-08-29 22:26:42
Reviewed by: Martin Mokrejš
IRESite record type:
  natural_transcript
The shape of the nucleic acid molecule translated:
  linear
The quality of the mRNA/+RNA sequence:
  end-to-end_full-length_mRNA
The abbreviated name of the virus/gene coding for this mRNA/+RNA molecule:
  EoPV
The genetic origin of this natural mRNA/+RNA:
  viral
The GenBankId GI:# number of exactly this mRNA/+RNA sequence:
34610126
The mRNA/+RNA description: 
Ectropis obliqua picorna-like virus, complete genome.
The mRNA/+RNA sequence represented in the +DNA notation:


Credibility of mRNA sequence:
  unknown
The organism containing this mRNA with IRES segment in its genome:
Ectropis obliqua picorna-like virus
A promoter reported in cDNA corresponding to IRES sequence:
  not tested
The total number of notable open-reading frames (ORFs):
  1
Notable Open-Reading Frames (ORFs; protein coding regions) in the mRNA/+RNA sequence:
ORF
ORF position:   1
Version: 0
Originaly submitted by: Martin Mokrejš Reviewed by: Martin Mokrejš
The abbreviated name of this ORF/gene:
polyprotein
The description of the protein encoded in this ORF:
polyprotein
The translational frameshift (ribosome slippage) involved:
  0
The ribosome read-through involved:
  no
The alternative forms of this protein occur by the alternative initiation of translation:
  not tested
The ORF absolute position (the base range includes START and STOP codons or their equivalents):
  391-9354
Citations:
Wang X, Zhang J, Lu J, Yi F, Liu C, Hu Y (2004) Sequence analysis and genomic organization of a new insect picorna-like virus, Ectropis obliqua picorna-like virus, isolated from Ectropis obliqua. J. Gen. Virol. 85(5):1145-1151
IRESs:
IRES:
Version: 0
Originaly submitted by: Martin Mokrejš Reviewed by: Martin Mokrejš
The IRES name:
  EoPV_5NTR
The IRES absolute position (the range includes START and STOP codons or their equivalents):
  1-390
Conclusion:
  weakly_supported_IRES
How IRES boundaries were determined:
experimentally_determined
The sequence of IRES region aligned to its secondary structure (if available):


Remarks:
The 5'-UTR region studied for IRES activity was tested in pRF plasmid containing the defective EMCV IRES.
Citations:
Lu J, Zhang J, Wang X, Jiang H, Liu C, Hu Y (2006) In vitro and in vivo identification of structural and sequence elements in the 5' untranslated region of Ectropis obliqua picorna-like virus required for internal initiation. J. Gen. Virol. 87(12):3667-3677
Lu J, Hu Y, Hu L, Zong S, Cai D, Wang J, Yu H, Zhang J (2007) Ectropis obliqua picorna-like virus IRES-driven internal initiation of translation in cell systems derived from different origins. J. Gen. Virol. 88(10):2834-2838
Last change to the database: 2015-04-16 16:45:23 GMT+1