IRESite_Id:38 summary record describing characteristics of GBV-A IRES

IRESite: The database of experimentally verified IRES structures

The nucleic acid data:

IRESite Id: `38`	Version: `7`
Originaly submitted by: Václav Vopálenský	Submission date: `2005-06-26 00:00:00`
Reviewed by: Václav Vopálenský	Last change: `2007-05-15 00:00:00`

IRESite record type:

natural_transcript

The shape of the nucleic acid molecule translated: `linear`	The quality of the mRNA/+RNA sequence: `hopefully_full-length_mRNA`
The abbreviated name of the virus/gene coding for this mRNA/+RNA molecule: `GBV-A`	The genetic origin of this natural mRNA/+RNA: `viral`

The GenBankId GI:# number of exactly this mRNA/+RNA sequence:
1572847

The mRNA/+RNA description:

Hepatitis GB virus A polyprotein, complete cds.

The mRNA/+RNA sequence represented in the +DNA notation:

CGTGGGAGTC CGGGGCCCCG GACCTCCCAC CGAGGTGGGG GGAAAGGGGC CCTGGACCGG CCGGGTGGAA GGCCCGGAAC CGGTCCATCT TCCTCAAGGT 
^1         ^11        ^21        ^31        ^41        ^51        ^61        ^71        ^81        ^91        

TGAGGAAGGG GTACGTCTAT CGGTCCGGTC GGTCCGAAAG GCGTCTGGAT GCCTAGTGTT AGGGTTCGTA GGTGGTAAAT CCCAGCTAGG CGTGAAAGCG 
^101       ^111       ^121       ^131       ^141       ^151       ^161       ^171       ^181       ^191       

CTATAGGATA GGCTTATCCC GGTGACCGCT GCCCCGGAAC CAGCCCCGCG GTTCTTTGGA CACGGTCCAC AGGTTGGGGG TACCGGTGTG AATAACCCCC 
^201       ^211       ^221       ^231       ^241       ^251       ^261       ^271       ^281       ^291       

CGACTGAAGC GTCAGTCGTT AAACGGAGAC GGTCTCCTGA GATCGCAACG ACGCCCCACG TACGGGAACG CCGCCAAAAC CTTCGGGACA GCTATGCGGG 
^301       ^311       ^321       ^331       ^341       ^351       ^361       ^371       ^381       ^391       

TTGACAATCC CAGTGGGGGG CCGGGGACCA GCTGATTACT TGTCCTGCGA GTTCCTCTTG AGACTGGCCG AAAGGCAGCC ACGGGGCCAC CAAGGCGGCG 
^401       ^411       ^421       ^431       ^441       ^451       ^461       ^471       ^481       ^491       

CAGCGCTGCA TGCGGCAAGG GGAAAAATCC TTCGGGTGAC CCCTGGTGGC AATCCCTTCC CTTAGGAGCA TGAGTGTGGT CGACACATTC ACCATGGCTT 
^501       ^511       ^521       ^531       ^541       ^551       ^561       ^571       ^581       ^591       

GGCTGTGGTT GCTGGTTTGC TTCCCCCTCG CGGGGGGGGT GCTCTTCAAC TCGCGGCACC AGTGCTTCAA TGGGGACCAT TATGTGCTTT CCAATTGTTG 
^601       ^611       ^621       ^631       ^641       ^651       ^661       ^671       ^681       ^691       

TTCCCGAGAC GAGGTTTACT TCTGTTTCGG GGACGGATGT CTGGTGGCTT ATGGCTGTAC TGTTTGCACA CAGTCTTGCT GGAAGCTCTA CCGGCCTGGG 
^701       ^711       ^721       ^731       ^741       ^751       ^761       ^771       ^781       ^791       

GTGGCTACTC GGCCCGGGTC CGAACCAGGT GAGCTGCTGG GGAGATTTGG GAGTGTAATT GGTCCGGTGT CGGCTTCGGC TTACACCGCT GGAGTCCTCG 
^801       ^811       ^821       ^831       ^841       ^851       ^861       ^871       ^881       ^891       

GGTTGGGTGA ACCTTACAGT TTGGCCTTCT TGGGGACGTT CCTCACCAGT CGCCTCTCAC GGATTCCCAA CGTCACCTGC GTGAAGGCTT GTGACCTTGA 
^901       ^911       ^921       ^931       ^941       ^951       ^961       ^971       ^981       ^991       

GTTTACCTAC CCAGGCTTGT CCATCGATTT TGACTGGGCG TTTACCAAGA TCTTGCAGTT GCCGGCCAAG CTGTGGCGAG GCCTAACGGC RGCWCCGGTC 
^1001      ^1011      ^1021      ^1031      ^1041      ^1051      ^1061      ^1071      ^1081      ^1091      

TTGAGCCTCC TCGTGATCCT CATGCTGGTC CTCGAGCAGC GCCTCCTGAT AGCCTTCCTA CTGCTTTTGG TAGTGGGCGA GGCTCAGAGG GGGATGTTCG 
^1101      ^1111      ^1121      ^1131      ^1141      ^1151      ^1161      ^1171      ^1181      ^1191      

ACAACTGCGT GTGTGGTTAC TGGGGGGGCA AGAGGCCCCC GTCGGTGACC CCGCTGTACC GTGGCAACGG TACTGTGGTG TGTGACTGTG ATTTTGGAAA 
^1201      ^1211      ^1221      ^1231      ^1241      ^1251      ^1261      ^1271      ^1281      ^1291      

AATGCATTGG GCCCCCCCCT TGTGTTCCGG YCTGGTGTGG CGGGACGGTC ATAGGAGGGG CACCGTGCGC GACCTCCCCC CGGTTTGCCC CCGGGAGGTT 
^1301      ^1311      ^1321      ^1331      ^1341      ^1351      ^1361      ^1371      ^1381      ^1391      

CTCGGCACGG TGACAGTCAT GTGTCAGTGG GGTTCTGCCT ACTGGATTTG GAGATTTGGG GACTGGGTTG CATTGTACGA CGAGCTACCA CGATCAGCTC 
^1401      ^1411      ^1421      ^1431      ^1441      ^1451      ^1461      ^1471      ^1481      ^1491      

TCTGTACTTT CTTCTCAGGT CATGGTCCAC AACCTAAAGA TCTCTCAGTC TTGAATCCAT CCGGGGCACC TTGTGCTTCT TGCGTCGTTG ACCAGAGGCC 
^1501      ^1511      ^1521      ^1531      ^1541      ^1551      ^1561      ^1571      ^1581      ^1591      

GCTGAAATGT GGTTCCTGCG TCCGCGACTG CTGGGAGACG GGGGGTCCTG GGTTCGATGA GTGCGGTGTC GGTACTCGGA TGACGAAGCA CCTCGAGGCC 
^1601      ^1611      ^1621      ^1631      ^1641      ^1651      ^1661      ^1671      ^1681      ^1691      

GTCCTGGTTG ATGGAGGTGT GGAGTCCAAG GTGACAACGC CCAAGGGTGA GCGCCCCAAA TACATAGGTC AGCACGGTGT GGGAACCTAC TACGGCGCTG 
^1701      ^1711      ^1721      ^1731      ^1741      ^1751      ^1761      ^1771      ^1781      ^1791      

TCCGTAGCCT CAACATCAGT TACCTAGTGA CTGAGGTGGG GGGCTATTGG CATGCGCTGA AGTGCCCGTG CGACTTTGTG CCCCGAGTGC TCCCAGAAAG 
^1801      ^1811      ^1821      ^1831      ^1841      ^1851      ^1861      ^1871      ^1881      ^1891      

AATTCCAGGT AGGCCTGTGA ATGCATGTCT AGCTGGGAAG TCTCCGCACC CGTTCGCAAG TTGGGCTCCC GGTGGGTTTT ACGCCCCCGT GTTCACCAAG 
^1901      ^1911      ^1921      ^1931      ^1941      ^1951      ^1961      ^1971      ^1981      ^1991      

TGCAACTGGC CGAAGACCTC CGGAGTGGAT GTGTGTCCTG GGTTTGCTTT CGATTTCCCT GGTGATCACA ACGGCTTCAT CCATGTTAAA GGCAACAGAC 
^2001      ^2011      ^2021      ^2031      ^2041      ^2051      ^2061      ^2071      ^2081      ^2091      

AGCAGGTTTA CAGTGGTCAG CGAAGGTCTT CGCCGGCTTG GTTGCTTACT GACATGGTCC TGGCCCTGTT GGTGGTGATG AAGTTGGCTG AGGCTAGAGT 
^2101      ^2111      ^2121      ^2131      ^2141      ^2151      ^2161      ^2171      ^2181      ^2191      

TGTCCCCCTG TTTATGCTGG CAATGTGGTG GTGGTTGAAT GGAGCATCTG CTGCCACTAT TGTCATCATA CACCCTACTG TCACGAAGTC CACTGAAAGT 
^2201      ^2211      ^2221      ^2231      ^2241      ^2251      ^2261      ^2271      ^2281      ^2291      

GTTCCATTGT GGACTCCGCC CACTGTTCCA ACTCCATCTT GCCCGAATTC TACCACCGGA GTCGCGGACT CTACCTACAA TGCTGGTTGC TACATGGTGG 
^2301      ^2311      ^2321      ^2331      ^2341      ^2351      ^2361      ^2371      ^2381      ^2391      

CAGGCCTGGC GGCCGGGGCT CAGGCGGTCT GGGGTGCTGC CAATGATGGT GCTCAGGCCG TCGTTGGTGG CATCTGGCCC GCGTGGCTCA AGCTGCGAAG 
^2401      ^2411      ^2421      ^2431      ^2441      ^2451      ^2461      ^2471      ^2481      ^2491      

CTTCGCTGCC GGTCTGGCCT GGTTGTCAAA TGTTGGGGCT TACTTGCCGG TCGTCGAGGC CGCVCTGGCT CCCGAGCTGG TGTGCACCCC GGTGGTCGGC 
^2501      ^2511      ^2521      ^2531      ^2541      ^2551      ^2561      ^2571      ^2581      ^2591      

TGGGCAGCCC AGGAGTGGTG GTTCACTGGT TGTCTGGGTG TGATGTGTGT CGTGGCGTAC CTGAATGTCC TGGGCTCTGT RAGGGCTGCC GTGCTTGTGG 
^2601      ^2611      ^2621      ^2631      ^2641      ^2651      ^2661      ^2671      ^2681      ^2691      

CGATGCACTT CGCAAGGGGT GCTCTGCCGC TGGTATTGGT GGTAGCTGCC GGGGTRACCC GGGAGCGGCA CAGCGTCTTA GGGCTTGAGG TGTGCTTCGA 
^2701      ^2711      ^2721      ^2731      ^2741      ^2751      ^2761      ^2771      ^2781      ^2791      

TCTGGATGGT GGAGACTGGC CRGACGCCAG TTGGTCTTGG GGTTTAGCAG GCGTGGTGAG CTGGGCCCTC CTGGTGGGGG GTCTGATGAC CCACGGTGGC 
^2801      ^2811      ^2821      ^2831      ^2841      ^2851      ^2861      ^2871      ^2881      ^2891      

CGATCAGCCA GAYTGACTTG GTAYGCCAGG TGGGCCGTCA ATTAYCAGAG GGTTCGYCGG TGGGTGAACA ACTCACCGGT TGGAGCYTTT GGYCGTTGGM 
^2901      ^2911      ^2921      ^2931      ^2941      ^2951      ^2961      ^2971      ^2981      ^2991      

GGCGYGCCTG GAAAGCYTGG TTRGTKGTGG CTTGGTTCTT CCCCCAGACA GTTGCCACAG TYTCCGTCAT CTTCATACTC TGTTTGAGCA GTTTAGATGT 
^3001      ^3011      ^3021      ^3031      ^3041      ^3051      ^3061      ^3071      ^3081      ^3091      

CATTGATTTC ATCTTGGARG TACTCTTGGT TAACTCACCA AATCTCGCGC GCTTGGCGCG RGTGCTGGAC TCCTTAGCTC THGCTGAGGA GCGGCTGGCC 
^3101      ^3111      ^3121      ^3131      ^3141      ^3151      ^3161      ^3171      ^3181      ^3191      

TGCTCTTGGC TGGTGGGCGT CCTGCGCAAG CGGGGCGTCC TCCTCTACGA GCACGCYGGT CACACTAGCA GGCGCGGTGC TGCCCGCTTG CGAGAGTGGG 
^3201      ^3211      ^3221      ^3231      ^3241      ^3251      ^3261      ^3271      ^3281      ^3291      

GYTTTGCGCT YGAGCCKGTT AGYATAACCA AGGAAGATTG YGCYATTGTT CGGGACTCTG CTCGTGTGTT GGGCTGTGGA CAATTGGTCC ATGGGAAACC 
^3301      ^3311      ^3321      ^3331      ^3341      ^3351      ^3361      ^3371      ^3381      ^3391      

AGTGGTCGCG AGGCGAGGCG ACGAGGTGTT GATCGGCTGT GTGAACAGTC GGTTCGACCT TCCGCCTGGC TTTGTTCCCA CTGCTCCCGT GGTSCTTCAT 
^3401      ^3411      ^3421      ^3431      ^3441      ^3451      ^3461      ^3471      ^3481      ^3491      

CARGCWGGCA ARGGRTTYTT YGGGGTTGTG AAGACMTCCA TGACAGGCAA GGACCCGTCC GAACACCACG GRAACGTGGT GGTCCTWGGG ACTTCAACAA 
^3501      ^3511      ^3521      ^3531      ^3541      ^3551      ^3561      ^3571      ^3581      ^3591      

CKCGTTCCAT GGGCTGCTGC GTGAACGGAG TAGTGTACAC RACATACCAT GGYACCAACG CCCGRCCKAT GGCGGGGCCK TTTGGKCCYG TCAAYGCTCG 
^3601      ^3611      ^3621      ^3631      ^3641      ^3651      ^3661      ^3671      ^3681      ^3691      

GTGGTGGTCW GCGAGYGACG ACGTCACGGT YTACCCGCTC CCWAATGGYG CTTCTTGCCT YCARGCWTGY AAGTGCCAAC CAACTGGGGT GTGGGTGATC 
^3701      ^3711      ^3721      ^3731      ^3741      ^3751      ^3761      ^3771      ^3781      ^3791      

CGGAATGACG GAGCTCTTTG CCATGGAACT CTCGGCAAGG TGGTGGATTT AGATATGCCC GCTGAGTTGT CAGACTTTCG CGGGTCTTCT GGATCACCAA 
^3801      ^3811      ^3821      ^3831      ^3841      ^3851      ^3861      ^3871      ^3881      ^3891      

TCTTGTGCGA TGAGGGTCAT GCTGTTGGCA TGCTGATTTC GGTGCTTCAT AGGGGGAGTA GGGTTTCCTC GGTGCGGTAT ACCAAACCTT GGGAAACTCT 
^3901      ^3911      ^3921      ^3931      ^3941      ^3951      ^3961      ^3971      ^3981      ^3991      

CCCTCGGGAG ATTGAGGCTC GATCGGAGGC CCCCCCTGTG CCAGGAACCA CTGGATACAG GGAGGCGCCA CTGTTCCTGC CCACCGGAGC TGGCAAGTCG 
^4001      ^4011      ^4021      ^4031      ^4041      ^4051      ^4061      ^4071      ^4081      ^4091      

ACGCGCGTGC CGAATGAGTA CGTCAAGGCT GGACACAARG TGCTTGTACT AAACCCATCC ATTGCCACAG TGAGGGCCAT GGGCCCTTAC ATGGAAAAGT 
^4101      ^4111      ^4121      ^4131      ^4141      ^4151      ^4161      ^4171      ^4181      ^4191      

TAACCGGCAA ACATCCGTCG GTGTACTGTG GCCATGACAC TACTGCATAT TCCAGGACTA CTGACTCATC TTTGACCTAC TGTACATACG GCAGGTTTAT 
^4201      ^4211      ^4221      ^4231      ^4241      ^4251      ^4261      ^4271      ^4281      ^4291      

GGCCAATCCC AGGAAATACT TGCGGGGGAA CGACGTCGTA ATTTGCGACG AGTTGCACGT CACCGACCCG ACCTCAATTT TGGGGATGGG TCGGGCGAGG 
^4301      ^4311      ^4321      ^4331      ^4341      ^4351      ^4361      ^4371      ^4381      ^4391      

TTACTCGCTC GCGAGTGCGG CGTACGCCTC CTGCTTTTCG CTACGGCGAC CCCACCGGTC TCTCCGATGG CGAAGCATGA ATCTATTCAT GAGGAGATGT 
^4401      ^4411      ^4421      ^4431      ^4441      ^4451      ^4461      ^4471      ^4481      ^4491      

TGGGCAGTGA GGGGGAGGTC CCCTTCTATT GCCAATTCCT CCCACTGAGT AGGTATGCTA CTGGGAGACA CCTGCTGTTT TGTCATTCCA AGGTAGARTG 
^4501      ^4511      ^4521      ^4531      ^4541      ^4551      ^4561      ^4571      ^4581      ^4591      

CACTAGGTTA TCCTCAGCTT TGGCCAGCTT TGGTGTCAAC ACCGTTGTGT ACTTCAGAGG CAAAGAAACT GACATTCCAA CTGGTGACGT GTGCGTTTGC 
^4601      ^4611      ^4621      ^4631      ^4641      ^4651      ^4661      ^4671      ^4681      ^4691      

GCCACAGACG CACTTTCCAC TGGTTACACT GGCAATTTTG ACACCGTAAC AGACTGTGGT TTAATGGTTG AGGAGGTAGT GGAAGTGACC CTGGACCCGA 
^4701      ^4711      ^4721      ^4731      ^4741      ^4751      ^4761      ^4771      ^4781      ^4791      

CCATCACTAT CGGTGTGAAG ACCGTCCCGG CCCCTGCCGA ACTGAGGGCT CAGAGGCGTG GTAGGTGTGG CCGTGGGAAA GCGGGCACTT ACTATCAGGC 
^4801      ^4811      ^4821      ^4831      ^4841      ^4851      ^4861      ^4871      ^4881      ^4891      

ATTGATGTCT TCGGCGCCGG CGGGAACSGT TCGGTCTGGG GCTCTCTGGG CAGCTGTTGA GGCTGGHGTC TCGTGGTATG GCCTAGAGCC CGATGCTATT 
^4901      ^4911      ^4921      ^4931      ^4941      ^4951      ^4961      ^4971      ^4981      ^4991      

GGAGACCTGC TTAGGGCCTA CGACTCGTGT CCTTATACTG CTGCCATCAG TGCGTCCATC GGAGAGGCCA TTGCCTTTTT TACTGGYCTA GTGCCAATGA 
^5001      ^5011      ^5021      ^5031      ^5041      ^5051      ^5061      ^5071      ^5081      ^5091      

GGAATTATCC TCAGGTGGTT TGGGCCAAGC AGAAGGGRCA CAACTGGCCA CTCTTGGTGG GTGTGCAGAG GCACATGTGT GAGGACGCGG GCTGTGGTCC 
^5101      ^5111      ^5121      ^5131      ^5141      ^5151      ^5161      ^5171      ^5181      ^5191      

KCCCGCTAAT GGTCCCGAAT GGAGCGGCAT CAGGGGAAAA GGGCCTGTTC CCCTGTTGTG CCGATGGGGT GGTGACTTGC CTGAGTCGGT GGCTCCGCAT 
^5201      ^5211      ^5221      ^5231      ^5241      ^5251      ^5261      ^5271      ^5281      ^5291      

CACTGGGTTG ATGACCTACA GGCCCGGCTC GGTGTGGCCG AGGGTTACAC TCCCTGCATT GCTGGACCGG TGCTTTTGGT CGGTTTGGCG ATGGCGGGGG 
^5301      ^5311      ^5321      ^5331      ^5341      ^5351      ^5361      ^5371      ^5381      ^5391      

GGGCTATCCT GGCACACTGG ACGGGGTCTC TGGTTGTAGT GACCAGTTGG GTTGTCAATG GGAACGGTAA CCCGCTGATA CAAAGCGCCT CTAGGGGCGT 
^5401      ^5411      ^5421      ^5431      ^5441      ^5451      ^5461      ^5471      ^5481      ^5491      

GGCKACYAGC GGTCCATACC CAGTACCCCC AGATGGTGGT GAACGGTACC CATCAGACAT CAAGCCAATY ACTGAGGCTG TGACCACCCT TGAGACTGCG 
^5501      ^5511      ^5521      ^5531      ^5541      ^5551      ^5561      ^5571      ^5581      ^5591      

TGCGGYTGGG GCCCAGCCGC GGCBAGTCTG GCTTATGTGA AGGCCTGTGA AACTGGAACC ATGTTGGCTG ACAARGCGAG TGCTGCGTGG CAGGCTTGGG 
^5601      ^5611      ^5621      ^5631      ^5641      ^5651      ^5661      ^5671      ^5681      ^5691      

CTGCAAACAA CTTTGTGCCT CCACCAGCAT CACACTCAAC TTCCTTGTTR CAGAGCTTGG AYGCTGCGTT CACTTCAGCT TGGGATAGCG TGTTCACTCA 
^5701      ^5711      ^5721      ^5731      ^5741      ^5751      ^5761      ^5771      ^5781      ^5791      

CGGCCGTTCC TTGCTTGTTG GGTTCACAGC TGCTTACGGC GCTCGGCGGA ACCCACCGCT GGGCGTCGGA GCCTCTTTCT TGCTGGGCAT GTCATCGAGC 
^5801      ^5811      ^5821      ^5831      ^5841      ^5851      ^5861      ^5871      ^5881      ^5891      

CACYTRACTC ACGTCAGACT TGCTGCTGCG TTGCTCCTCG GCGTCGGGGG TACCGTCCTA GGCACGCCTG CTACTGGGCT TGCTATGGCG GGTGCCTACT 
^5901      ^5911      ^5921      ^5931      ^5941      ^5951      ^5961      ^5971      ^5981      ^5991      

TCGCKGGGGG CAGCGTTACC GCTAACTGGC TGAGTATCAT TGTGGCTCTA ATCGGAGGCT GGGAGGGGGC RGTKAACGCA GCCTCACTCA CCTTCGAYCT 
^6001      ^6011      ^6021      ^6031      ^6041      ^6051      ^6061      ^6071      ^6081      ^6091      

CCTGGCKGGG AAGTTACAAG CKAGYGAYGC TTGGTGCCTR GTCAGYTGCY TGGCCTCTCC GGGGGCTTCG GTGGCYGGTG TGGCDCTVGG YCTDYTGCTV 
^6101      ^6111      ^6121      ^6131      ^6141      ^6151      ^6161      ^6171      ^6181      ^6191      

TGGTCTGTCA ARAAGGGTGT GGGWCARGAY TGGGTTAACA GAYTGTTGAC GATGATGCCA CGCAGTTCGG TGATGCCTGA CGATTTCTTC CTCAAAGATG 
^6201      ^6211      ^6221      ^6231      ^6241      ^6251      ^6261      ^6271      ^6281      ^6291      

AGTTCGTCAC CAAGGTGTCT ACTGTCCTGC GAAAGTTGTC ATTGTCAAGA TGGATCATGA CTCTTGTGGA CAAGCGGGAG ATGGAGATGG AGACMCCCGC 
^6301      ^6311      ^6321      ^6331      ^6341      ^6351      ^6361      ^6371      ^6381      ^6391      

TTCTCAGATT GTTTGGGACT TGCTTGACTG GTGCATCCGG CTRGGTCGGT TCCTGTACAA TAAACTYATG TTTGCTCTCC CTAGGTTGCG CCTGCCGCTT 
^6401      ^6411      ^6421      ^6431      ^6441      ^6451      ^6461      ^6471      ^6481      ^6491      

ATCGGTTGCA GTACCGGTTG GGGTGGCCCG TGGGAGGGCA ATGGTCATTT GGAAACAAGG TGTACTTGTG GCTGTGTGAT TACCGGTGAT ATTCACGATG 
^6501      ^6511      ^6521      ^6531      ^6541      ^6551      ^6561      ^6571      ^6581      ^6591      

GTATATTGCA CGACCTACAT TATACCTCCC TACTGTGCAG ACATTACTAC AAGAGGACAG TGCCTGTTGG CGTCATGGGC AATGCTGAGG GAGCAGTCCC 
^6601      ^6611      ^6621      ^6631      ^6641      ^6651      ^6661      ^6671      ^6681      ^6691      

CCTTGTGCCT ACTGGCGGTG GAATCAGGAC TTACCAAATT GGGACTTCTG ACTGGTTTGA GGCTGTGGTC GTGCATGGGA CAATCACGGT GCACGCCACC 
^6701      ^6711      ^6721      ^6731      ^6741      ^6751      ^6761      ^6771      ^6781      ^6791      

AGTTGCTATG AGTTGAAAGC TGCTGACGTT CGGAGGGCGG TGCGAGCCGG CCCGACTTAC GTTGGTGGCG TACCTTGCAG CTGGAGCGCG CCGTGTACTG 
^6801      ^6811      ^6821      ^6831      ^6841      ^6851      ^6861      ^6871      ^6881      ^6891      

CGCCTGCGCT CGTTTACAGG CTAGGCCAGG GCATCAAAAT CGATGGAGCG CGCCGACTGT TGCCCTGTGA CTTAGCACAG GGAGCGCGCC ACCCCCCGGT 
^6901      ^6911      ^6921      ^6931      ^6941      ^6951      ^6961      ^6971      ^6981      ^6991      

ATCTGGCAGT GTTGCCGGTA GTGGTTGGAC AGATGAGGAC GAGAGGGACT TGGTGGAAAC CAAGGCTGCC GCCATCGAGG CCATTGGGGC GGCCTTGCAC 
^7001      ^7011      ^7021      ^7031      ^7041      ^7051      ^7061      ^7071      ^7081      ^7091      

CTCCCTTCAC CGGAGGCTGC TCAGGCCGCT CTAGAGGCTT TGGAGGAGGC TGCCGTGTCC CTGTTGCCCC ATGTGCCCGT CATTATGGGT GATGACTGTT 
^7101      ^7111      ^7121      ^7131      ^7141      ^7151      ^7161      ^7171      ^7181      ^7191      

CATGCCGGGA TGAGGCGTTC CAAGGCCACT TCATCCCAGA ACCCAATGTG ACAGAGGTAC CCATTGAGCC CACGGTCGGA GACGTGGAGG CACTCAAGCT 
^7201      ^7211      ^7221      ^7231      ^7241      ^7251      ^7261      ^7271      ^7281      ^7291      

GCGGGCTGCA GACCTGACCG CCAGGTTGCA AGACTTGGAG GCCATGGCTC TCGCCCGCGC TGAGTCAATC GAGGATGCTC GCGCAGCTTC GATGCCTTCG 
^7301      ^7311      ^7321      ^7331      ^7341      ^7351      ^7361      ^7371      ^7381      ^7391      

CTCACCGAGG TGGACTCAAT GCCATCATTG GAGTCGAGCC CTTGCTCCTC CTTTGAACAA ATCTCTTTAA CTGAAAGTGA CCCTGAGACT GTCGTCGAGG 
^7401      ^7411      ^7421      ^7431      ^7441      ^7451      ^7461      ^7471      ^7481      ^7491      

CTGGCTTACC CTTGGAGTTC GTGAACTCCA ACACCGGGCC GTCTCCGGCT CGGAGGATTG TCAGAATCCG ACAGGCTTGC TGTTGTGACA GATCCACAAT 
^7501      ^7511      ^7521      ^7531      ^7541      ^7551      ^7561      ^7571      ^7581      ^7591      

GAAGGCCATG CCGTTGTCGT TCACTGTCGG GGAGTGCCTC TTCGTTACTC GCTATGACCC GGACGGTCAC CAACTGTTTG ACGAGCGAGG TCCGATAGAG 
^7601      ^7611      ^7621      ^7631      ^7641      ^7651      ^7661      ^7671      ^7681      ^7691      

GTATCTACTC CTATATGTGA AGTGATTGGG GACATCAGGC TTCAGTGTGA CCAAATTGAG GAAACTCCAA CATCTTACTC TTACATCTGG TCAGGGGCGC 
^7701      ^7711      ^7721      ^7731      ^7741      ^7751      ^7761      ^7771      ^7781      ^7791      

CCTTGGGTAC TGGGAGAAGT GTCCCCCAAC CCATGACGCG CCCTATAGGG ACCCATCTGA CTTGTGACAC TACCAAAGTT TATGTTACTG ACCCTGATCG 
^7801      ^7811      ^7821      ^7831      ^7841      ^7851      ^7861      ^7871      ^7881      ^7891      

GGCCGCTGAG CGGGCCGAGA AGGTTACAAT CTGGAGGGGT GATAGGAAGT ATGACAAGCA TTATGAGGCT GTCGTTGAGG CTGTCCTGAA AAAGGCAGCC 
^7901      ^7911      ^7921      ^7931      ^7941      ^7951      ^7961      ^7971      ^7981      ^7991      

GCGACGAAGT CTCATGGCTG GACCTATTCC CAGGCTATAG CTAAAGTTAG GCGCCGAGCA GCCGCTGGAT ACGGCAGCAA GGTGACCGCC TCCACATTGG 
^8001      ^8011      ^8021      ^8031      ^8041      ^8051      ^8061      ^8071      ^8081      ^8091      

CCACTGGTTG GCCTCACGTG GAGGAGATGC TGGACAAAAT AGCCAGGGGA CAGGAAGTTC CTTTCACTTT TGTGACCAAG CGAGAGGTTT TCTTCTCCAA 
^8101      ^8111      ^8121      ^8131      ^8141      ^8151      ^8161      ^8171      ^8181      ^8191      

AACTACCCGT AAGCCCCCAA GATTCATAGT TTTCCCACCT TTGGACTTCA GGATAGCTGA AAAGATGATT CTGGGTGACC CCGGCATCGT TGCAAAGTCA 
^8201      ^8211      ^8221      ^8231      ^8241      ^8251      ^8261      ^8271      ^8281      ^8291      

ATTCTGGGTG ACGCTTATCT GTTCCAGTAC ACGCCCAATC AGAGGGTCAA AGCTCTGGTT AAGGCGTGGG AGGGGAAGTT GCATCCCGCT GCGATCACTG 
^8301      ^8311      ^8321      ^8331      ^8341      ^8351      ^8361      ^8371      ^8381      ^8391      

TGGACGCCAC TTGTTTCGAC TCATCGATTG ATGAGCACGA CATGCAGGTG GAGGCTTCGG TGTTTGCGGC GGCTAGTGAC AACCCCTCAA TGGTACATGC 
^8401      ^8411      ^8421      ^8431      ^8441      ^8451      ^8461      ^8471      ^8481      ^8491      

TTTGTGCAAG TACTACTCTG GTGGCCCTAT GGTTTCCCCA GATGGGGTTC CCTTGGGGTA CCGCCAGTGT AGGTCGTCGG GCGTGTTAAC AACTAGCTCG 
^8501      ^8511      ^8521      ^8531      ^8541      ^8551      ^8561      ^8571      ^8581      ^8591      

GCGAACAGCA TCACTTGTTA CATTAAGGTC AGCGCGGCCT GCAGGCGGGT GGGGATTAAG GCACCATCAT TCTTTATAGC TGGAGATGAT TGCTTGATCA 
^8601      ^8611      ^8621      ^8631      ^8641      ^8651      ^8661      ^8671      ^8681      ^8691      

TCTATGAAAA TGATGGAACT GATCCCTGCC CTGCTCTTAA GGCTGCCCTG GCCAACTATG GATACAGGTG TGAACCAACA AAGCATGCTT CACTGGACAC 
^8701      ^8711      ^8721      ^8731      ^8741      ^8751      ^8761      ^8771      ^8781      ^8791      

AGCTGAGTGT TGCTCGGCCT ACTTGGCTGA GTGCGTAGCT GGGGGTGCCA AGCGCTGGTG GTTGAGCACG GACATGAGGA AGCCGCTCGC AAGGGCGTCT 
^8801      ^8811      ^8821      ^8831      ^8841      ^8851      ^8861      ^8871      ^8881      ^8891      

TCCGAATATT CGGACCCAAT CGGCAGTGCT TTAGGGACCA TCTTGATGTA TCCCCGGCAT CCAATCGTGC GGTATGTTCT AATACCACAC GTACTAATAA 
^8901      ^8911      ^8921      ^8931      ^8941      ^8951      ^8961      ^8971      ^8981      ^8991      

TGGCTTACAG GAGTGGCAGC ACACCGGATG AGTTGGTTAT GTGTCAGGTT CAGGGAAATC ATTACTCTTT CCCGCTGCGG CTGCTGCCTC GCGTCTTGGT 
^9001      ^9011      ^9021      ^9031      ^9041      ^9051      ^9061      ^9071      ^9081      ^9091      

CTCTCTACAT GGTCCGTGGT GCCTACAAGT CACCACGGAC AGTACGAAGA CTAGGATGGA GGCAGGCTCA GCSTTGCGGG ATTTAGGAAT GAAATCCCTA 
^9101      ^9111      ^9121      ^9131      ^9141      ^9151      ^9161      ^9171      ^9181      ^9191      

GCCTGGCACC GCCGACGTGC CGGAAATGTG CGCACTCGCC TCCTGAGGGG AGGCAAGGAG TGGGGGCACC TGGCCAGAGC CCTCCTCTGG CAYCCAGGKT 
^9201      ^9211      ^9221      ^9231      ^9241      ^9251      ^9261      ^9271      ^9281      ^9291      

TGAAGGAGCA YCCCCCRCCC ATAAATTCAC TTCCAGGTTT TCAGCTGGCG ACGCCTTACG AACACCATGA AGAGGTCTTG ATCTCGATCA AGAGTCGACC 
^9301      ^9311      ^9321      ^9331      ^9341      ^9351      ^9361      ^9371      ^9381      ^9391      

ACCTTGGATA AGGTGGATTC TTGGTGCTTG TCTCTCGTTG CTGGCCGCCT TGCTGTGAAT TCGCTCCAGG CAGTAGGACC TTYGGGTCGG GGGAGTGTCG 
^9401      ^9411      ^9421      ^9431      ^9441      ^9451      ^9461      ^9471      ^9481      ^9491      

CCCCCCCCTC TACAGACCGC TRCTCGCGTA GAGYCCGTTG GTCGGGTAAC GACCCGGTGG CTCGTAAGCT CCTCCTCGGA TGAGGCGCAG TGCACTGCGT 
^9501      ^9511      ^9521      ^9531      ^9541      ^9551      ^9561      ^9571      ^9581      ^9591      

AACTGAAGGG GTGCACCCCG GTTGCCCYAC GCCCGATGGC GTRGTGGTCA ATT
^9601      ^9611      ^9621      ^9631      ^9641      ^9651

Credibility of mRNA sequence:

guessed_as_the_sequence_was_never_published_by_authors_nor_described_in_sufficient_detail

The organism containing this mRNA with IRES segment in its genome:

Hepatitis GB virus A

A promoter reported in cDNA corresponding to IRES sequence:
not tested The total number of notable open-reading frames (ORFs):
1

Notable Open-Reading Frames (ORFs; protein coding regions) in the mRNA/+RNA sequence:

ORF

ORF position:

1

Version: `1`
Originaly submitted by: Václav Vopálenský	Reviewed by: Václav Vopálenský

The abbreviated name of this ORF/gene:
GBV_A

The description of the protein encoded in this ORF:
Hepatitis GB virus A polyprotein.

The translational frameshift (ribosome slippage) involved:
0 The ribosome read-through involved:
no

The alternative forms of this protein occur by the alternative initiation of translation:

no

The ORF absolute position (the base range includes START and STOP codons or their equivalents):

594-9458

Remarks:

Monocistronic and bicistronic T7 transcripts were tested in vitro in rabbit reticulocyte lysates.

Citations:

Simons J. N., Desai S. M., Schultz D. E., Lemon S. M., Mushahwar I. K. (1996) Translation initiation in GB viruses A and C: evidence for internal ribosome entry and implications for genome organization. J. Virol. 70(9):6126-6135

IRESs:

IRES:

Version: `8`	Last change: `2007-05-15 00:00:00`
Originaly submitted by: Václav Vopálenský	Reviewed by: Václav Vopálenský
The IRES name: `GBV-A`

The IRES absolute position (the range includes START and STOP codons or their equivalents):

15-707

Conclusion:
putative_IRES

How IRES boundaries were determined:
experimentally_determined

The sequence of IRES region aligned to its secondary structure (if available):

GCCCCGGACC TCCCACCGAG GTGGGGGGAA AGGGGCCCTG GACCGGCCGG GTGGAAGGCC CGGAACCGGT CCATCTTCCT CAAGGTTGAG GAAGGGGTAC 
^15        ^25        ^35        ^45        ^55        ^65        ^75        ^85        ^95        ^105       

GTCTATCGGT CCGGTCGGTC CGAAAGGCGT CTGGATGCCT AGTGTTAGGG TTCGTAGGTG GTAAATCCCA GCTAGGCGTG AAAGCGCTAT AGGATAGGCT 
^115       ^125       ^135       ^145       ^155       ^165       ^175       ^185       ^195       ^205       

TATCCCGGTG ACCGCTGCCC CGGAACCAGC CCCGCGGTTC TTTGGACACG GTCCACAGGT TGGGGGTACC GGTGTGAATA ACCCCCCGAC TGAAGCGTCA 
^215       ^225       ^235       ^245       ^255       ^265       ^275       ^285       ^295       ^305       

GTCGTTAAAC GGAGACGGTC TCCTGAGATC GCAACGACGC CCCACGTACG GGAACGCCGC CAAAACCTTC GGGACAGCTA TGCGGGTTGA CAATCCCAGT 
^315       ^325       ^335       ^345       ^355       ^365       ^375       ^385       ^395       ^405       

GGGGGGCCGG GGACCAGCTG ATTACTTGTC CTGCGAGTTC CTCTTGAGAC TGGCCGAAAG GCAGCCACGG GGCCACCAAG GCGGCGCAGC GCTGCATGCG 
^415       ^425       ^435       ^445       ^455       ^465       ^475       ^485       ^495       ^505       

GCAAGGGGAA AAATCCTTCG GGTGACCCCT GGTGGCAATC CCTTCCCTTA GGAGCATGAG TGTGGTCGAC ACATTCACCA TGGCTTGGCT GTGGTTGCTG 
^515       ^525       ^535       ^545       ^555       ^565       ^575       ^585       ^595       ^605       

GTTTGCTTCC CCCTCGCGGG GGGGGTGCTC TTCAACTCGC GGCACCAGTG CTTCAATGGG GACCATTATG TGCTTTCCAA TTGTTGTTCC CGA
^615       ^625       ^635       ^645       ^655       ^665       ^675       ^685       ^695       ^705

Remarks:

GB virus A UTR (579 nt) and putative open reading frame (114 nt). The IRES activity was weak compared to HAV
IRES.

Citations:

Last change to the database: 2019-03-18 09:32:49 GMT+1