IRESite: The database of experimentally verified IRES structures

Date

Reason

IRESite Id

Gene name

IRES name

IRES functional status

mRNA status

GI:#

description

recordtype

ORF count

IRES start

IRES stop

Translation method

in-vitro transl. system

Translation effic. chng. in % of new IRES

Translation effic. chng. in % of positive control IRES

Translation effic. chng. in % of negative control IRES

Posit. control. IRES name

mRNA characteristics

IRESite Seq Id

IRESite IRES Id

IRESite IRES Seq Id

IRESite IRES Struct Id

translation id

protein interaction id

IRESite 2DExp Id

rrna complementarity id

2019-03-18 09:32:49

changed

ismaeil

640

HCV 4a

['HCV-IRES-4a-Egyptain-Patients-TBRI']

[None]

only_IRES_fragment

1333190374

ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Hepacivirus.

natural_transcript

[1]

[265]

[]

2045

[760L]

[2046L]

[69L]

[]

[51L]

[]

2019-03-18 09:25:55

submitted

ismaeil

640

HCV 4a

['HCV-IRES-4a-Egyptain-Patients-TBRI']

[None]

only_IRES_fragment

981540

ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Hepacivirus.

natural_transcript

[1]

[265]

[]

2045

[760L]

[2046L]

[69L]

[]

[51L]

[]

2015-04-16 16:45:23

submitted

jestall

639

[]

promoter-less_plasmid_without_putative_IRES

[]

2015-04-08 23:31:45

changed

mmokrejs

110

Apaf-1

['Apaf-1']

[None]

hopefully_full-length_mRNA

Homo sapiens apoptotic protease activating factor 1 (Apaf-1) mRNA, complete cds. Similar to C. elegans cell death gene ced-4.

natural_transcript

[504]

[734]

[]

2008

[117L]

[1130L]

[43L]

[]

[33L]

[26L]

[]

2011-04-08 22:43:22

changed

mmokrejs

638

['HCV_type_1b_1-341', 'EMCV-R_260-827']

['functional', 'functional']

end-to-end_full-length_mRNA

5441834

Hepatitis C virus replicon I377/NS3-3'UTR.

plasmid_with_promoter_and_putative_IRES_without_translational_characterization

[1, 1190]

[341, 1800]

[]

2042

[758L, 759L]

[301L, 2043L]

[None, None]

[]

2011-04-08 22:34:23

changed

mmokrejs

349

['EMCV-R_260-832']

['functional']

hopefully_full-length_mRNA

Putative spliced bicistronic mRNA transcript derived from pRF based plasmid with EMCV-R IRES in the intercistronic region encoding Fluc-fusion protein extended by 2 aminoacid residues.

plasmid_with_promoter_and_putative_IRES_without_translational_characterization

[1168]

[1745]

[]

1175

[496L]

[1177L]

[None]

[]

2011-04-08 22:32:43

changed

mmokrejs

230

['EMCV-R_260-832']

['functional']

our_best_guess

Putative bicistronic in vitro T7 transcript (till the cleaved BamHI site) containing EMCV-R IRES located between RLuc and FLuc genes.

plasmid_with_promoter_and_putative_IRES_without_translational_characterization

[1026]

[1603]

[]

1174

[382L]

[782L]

[None]

[]

2011-04-08 22:31:31

changed

mmokrejs

227

['EMCV-R_260-832']

['functional']

our_best_guess

Putative spliced bicistronic mRNA transcript derived from pRF based plasmid with EMCV-R IRES in the intercistronic region.

plasmid_with_promoter_and_putative_IRES_without_translational_characterization

[1168]

[1745]

[]

1172

[379L]

[782L]

[None]

[]

2011-04-08 22:29:43

changed

mmokrejs

382

['EMCV-R_260-845']

['functional']

our_best_guess

One of the two putative in vivo transcripts of mammalian expression vector pNBioSec: this one is from minimal CMV promoter down to beta-globin poly(A) signal from rabbit.

plasmid_with_promoter_and_putative_IRES_without_translational_characterization

[359]

[945]

[]

1273

[520L]

[1271L]

[None]

[]

2011-04-08 22:28:06

changed

mmokrejs

384

['EMCV-R_260-845']

['functional']

our_best_guess

One of the two putative in vivo transcripts of mammalian expression vector pNBio: this one is from minimal CMV promoter down to beta-globin poly(A) signal from rabbit.

plasmid_with_promoter_and_putative_IRES_without_translational_characterization

[282]

[868]

[]

1275

[521L]

[1271L]

[None]

[]

2011-04-08 22:26:36

changed

mmokrejs

379

['EMCV-R_260-845']

['functional']

both_UTRs_possibly_incomplete

Putative in vivo transcript of cloning vector pLXRN from Mo-MuLV down to the end of R in right LTR.

plasmid_with_promoter_and_putative_IRES_without_translational_characterization

[717]

[1303]

[]

1266

[518L]

[1268L]

[None]

[]

2011-04-08 22:24:46

changed

mmokrejs

386

['EMCV-R_260-845']

['functional']

possibly_wrong

Putative in vivo spliced transcript of pIREShyg plasmid from CLONTECH with synthetic intron spliced out. The intron boundaries do not conform the GT-AG consensus.

plasmid_with_promoter_and_putative_IRES_without_translational_characterization

[146]

[732]

[]

1277

[522L]

[1268L]

[None]

[]

2011-04-08 22:22:20

changed

mmokrejs

582

['EMCV-R_245-832']

['functional']

our_best_guess

Incomplete T3 promoter driven monocistronic transcript of pIRES-lacZ plasmid preceded by EMCV-R IRES.

plasmid_with_promoter_and_putative_IRES_without_translational_characterization

[71]

[658]

[]

1861

[706L]

[1863L]

[None]

[]

2011-04-08 22:21:15

changed

mmokrejs

638

['HCV_type_1b', 'EMCV-R_260-827']

['functional', 'functional']

end-to-end_full-length_mRNA

5441834

Hepatitis C virus replicon I377/NS3-3'UTR.

plasmid_with_promoter_and_putative_IRES_without_translational_characterization

[1, 1190]

[341, 1800]

[]

2042

[758L, 759L]

[301L, 2043L]

[None, None]

[]

2011-04-08 22:19:39

changed

mmokrejs

547

['EMCV-R_281-833']

['functional']

hopefully_full-length_mRNA

In vitro T7 promoter based HpaI site run-off transcript of pF/R-wt plasmid.

plasmid_with_promoter_and_putative_IRES_without_translational_characterization

[1741]

[2293]

[]

1762

[679L]

[1761L]

[None]

[]

2011-04-08 22:18:55

changed

mmokrejs

546

['EMCV-R_281-833']

['functional']

3UTR_possibly_incomplete

Putative in vivo CMV IE promoter-derived spliced transcript contain firefly luciferase and renilla luciferase separated by a wild-type EMCV IRES up to the SV40 poly(A) signal.

plasmid_with_promoter_and_putative_IRES_without_translational_characterization

[1948]

[2500]

[]

1759

[678L]

[1761L]

[None]

[]

2011-04-08 22:17:34

changed

mmokrejs

460

['EMCV-R_259-825']

['functional']

hopefully_full-length_mRNA

In vivo CMV transcript produced from bicistronic plasmid pDC-EMCV which encodes neomycin phosphotransferase and beta-galactosidase as the first and the second cistron respectively and the EMCV-R IRES (nt from -575 to nt -9 of the original sequence) inserted in between reporters.

plasmid_with_promoter_and_putative_IRES_without_translational_characterization

[1110]

[1676]

[]

1509

[594L]

[1385L]

[None]

[]

2011-04-08 22:15:35

changed

mmokrejs

428

['EMCV-R_259-825']

['functional']

hopefully_full-length_mRNA

In vitro T7 run-off transcript produced from bicistronic plasmid pDC-EMCV which encodes neomycin phosphotransferase and truncated version of the beta-galactosidase (linearized at the Ssp1 site at position 3744 within pDC-EMCV; see 1384.gb below) as the first and the second cistron respectively and the EMCV-R IRES (nt from -575 to nt -9 of the original sequence) inserted between reporters.

plasmid_with_promoter_and_putative_IRES_without_translational_characterization

[1059]

[1625]

[]

1383

[561L]

[1385L]

[None]

[]

2011-04-08 22:14:11

changed

mmokrejs

292

['EMCV-R_281-827']

['functional']

hopefully_full-length_mRNA

Putative T7 promoter-derived transcript transcribed either in vivo or in vitro in BHK-21 cells infected by recombinant vaccinia virus vTF7-3 containing 5'-EMCV-R_IRES-CAT-EMCV_type_R_IRES_eGFP-3'.

plasmid_with_promoter_and_putative_IRES_without_translational_characterization

[1289]

[1835]

[]

948

[441L]

[950L]

[None]

[]

2011-04-08 22:13:01

changed

mmokrejs

545

['EMCV-R_335-834']

['functional']

hopefully_full-length_mRNA

Putative in vitro transcript from an empty vector from T7 promoter up to Tphi transcription terminator containing 30 nt long poly(A) stretch after the ORF but not at the physical 3'-end of the transcript.

plasmid_with_promoter_and_putative_IRES_without_translational_characterization

[17]

[516]

[]

1756

[677L]

[1758L]

[None]

[]

2011-04-08 22:11:58

changed

mmokrejs

544

['EMCV-R_335-834']

['functional']

3UTR_incomplete

Putative in vitro T7 promoter derived transcript of the empty vector up to the linearization PstI site.

plasmid_with_promoter_and_putative_IRES_without_translational_characterization

[17]

[516]

[]

1753

[676L]

[1755L]

[None]

[]

2011-04-08 22:10:28

changed

mmokrejs

380

['EMCV-R_260-845']

['functional']

both_UTRs_possibly_incomplete

One of the two putative in vivo transcripts of mammalian expression vector pCBio: this one is from minimal CMV promoter down to beta-globin poly(A) signal from rabbit.

plasmid_with_promoter_and_putative_IRES_without_translational_characterization

[221]

[807]

[]

1269

[519L]

[1271L]

[None]

[]

2011-04-08 22:08:17

changed

mmokrejs

263

['EMCV-R_261-845']

['functional']

our_best_guess

Putative in vivo CMV transcript of pCAT-EMCV-eGFP including the SV40 early poly(A) signal.

plasmid_with_promoter_and_putative_IRES_without_translational_characterization

[814]

[1400]

[]

868

[413L]

[870L]

[None]

[]

2011-04-08 22:03:26

changed

mmokrejs

245

['EMCV-R_271-831']

['functional']

3UTR_incomplete

Putative bicistronic mRNA transcript derived from pBSRLucEFluc plasmid through SV40 promoter. The plasmid has in the intercistronic region T7 promoter. The FLuc ORF has one additional aminoacid and one putative sequencing error.

plasmid_with_promoter_and_putative_IRES_without_translational_characterization

[1188]

[1749]

[]

829

[395L]

[831L]

[None]

[]

2011-04-08 22:02:13

changed

mmokrejs

326

['EMCV-R_272-831']

['functional']

3UTR_incomplete

Putative bicistronic mRNA transcript derived from pBSRLucEFluc plasmid through SV40 promoter. The plasmid has in the intercistronic region T7 promoter.

plasmid_with_promoter_and_putative_IRES_without_translational_characterization

[2072]

[2633]

[]

1054

[478L]

[1056L]

[None]

[]

2011-04-08 21:56:24

changed

mmokrejs

585

['EMCV-R_260-831']

['functional']

our_best_guess

In vivo spliced transcript derived through CMV IE promoter containing Renilla and firefly luciferases and terminated after the SV40 late poly(A) signal.

plasmid_with_promoter_and_putative_IRES_translationally_characterized

[1250]

[1829]

['in vivo', 'in vivo']

[None, None]

['100.000', '100.000']

['None', 'None']

['25.000', '18.000']

[None, None]

['endogenous_nuclear_RNA_Pol_II_transcript', 'endogenous_nuclear_RNA_Pol_II_transcript']

1868

[708L]

[1870L]

[None]

[619L, 620L]

[]

2011-04-08 21:51:24

changed

mmokrejs

353

['EMCV-R_260-841']

['functional']

end-to-end_full-length_mRNA

In vitro T3 run-off transcript containing 5' region of EMCV-R containing the IRES (-574 to -1) plus the first 8 nucleotides from the viral polyprotein cloned upstream of the luciferase reporter RNA lacking a poly(A) tail.

plasmid_with_promoter_and_putative_IRES_translationally_characterized

[62]

[644]

['in vitro']

['HeLa cell lysate']

['100.000']

['None']

['0.003']

[None]

['exogenous_RNA_with_ApppG_cap_without_polyA_tail']

1192

[500L]

[1187L]

[None]

[424L]

[]

2011-04-08 21:49:13

changed

mmokrejs

354

['EMCV-R_260-841']

['functional']

end-to-end_full-length_mRNA

plasmid_with_promoter_and_putative_IRES_translationally_characterized

[62]

[644]

['in vitro']

['HeLa cell lysate']

['100.000']

['None']

['0.050']

[None]

['exogenous_RNA_with_ApppG_cap_with_polyA_tail']

1193

[501L]

[1187L]

[None]

[425L]

[]

2011-04-08 21:47:14

changed

mmokrejs

585

['EMCV-R_260-831']

['functional']

our_best_guess

In vivo spliced transcript derived through CMV IE promoter containing Renilla and firefly luciferases and terminated after the SV40 late poly(A) signal.

plasmid_with_promoter_and_putative_IRES_translationally_characterized

[1250]

[1829]

['in vivo', 'in vivo']

[None, None]

['100.000', '100.000']

['None', 'None']

['25.000', '18.000']

[None, None]

['endogenous_nuclear_RNA_Pol_II_transcript', 'endogenous_nuclear_RNA_Pol_II_transcript']

1868

[708L]

[1870L]

[None]

[619L, 620L]

[]

2011-04-08 21:41:58

changed

mmokrejs

590

['EMCV-R_260-831']

['functional']

hopefully_full-length_mRNA

In vivo spliced monocistronic CMV IE promoter driven transcript containing EMCV-R IRES in its 5'-UTR and terminated after the SV40 poly(A) signal.

plasmid_with_promoter_and_putative_IRES_translationally_characterized

[254]

[833]

['in vivo']

[None]

['100.000']

['None']

['120.000']

[None]

['endogenous_nuclear_RNA_Pol_II_transcript']

1877

[711L]

[1870L]

[None]

[623L]

[]

2011-04-08 21:40:56

changed

mmokrejs

590

['EMCV-R_260-831']

['functional']

hopefully_full-length_mRNA

In vivo spliced monocistronic CMV IE promoter driven transcript containing EMCV-R IRES in its 5'-UTR and terminated after the SV40 poly(A) signal.

plasmid_with_promoter_and_putative_IRES_translationally_characterized

[254]

[833]

['in vivo']

[None]

['100.000']

['None']

['120.000']

[None]

['endogenous_nuclear_RNA_Pol_II_transcript']

1877

[711L]

[1870L]

[None]

[623L]

[]

2011-04-08 21:37:11

changed

mmokrejs

608

['EMCV-R_315-845']

['functional']

both_UTRs_incomplete

Part of the T7-derived transcript studied in in vitro assays. The 5'-UTR could have been longer but do not know the necessary details. The intercistronic region contains 5-UTR sequence of EMCV-R virus (bp 315-843).

plasmid_with_promoter_and_putative_IRES_translationally_characterized

[785]

[1315]

['in vivo', 'in vitro', 'in vitro']

[None, 'rabbit reticulocytes lysate', 'wheat germ lysate']

['100.000', '279.000', '100.000']

['None', 'None', 'None']

['0.860', '1.000', '80.000']

[None, None, None]

['endogenous_cytoplasmic_uncapped_T7_transcript_without_polyA_tail', 'exogenous_RNA_without_cap_without_polyA_tail', 'exogenous_RNA_without_cap_without_polyA_tail']

1930

[726L]

[1931L]

[None]

[634L, 635L, 636L]

[]

2010-11-30 21:33:39

changed

mmokrejs

AML1/RUNX1

['AML1/RUNX1']

[None]

5UTR_possibly_incomplete

49574545

Homo sapiens runt-related transcription factor 1 (acute myeloid leukemia 1; aml1 oncogene) (RUNX1), transcript variant 2, mRNA. Poly(A)-tail sequence dropped.

natural_transcript

[39]

[1599]

[]

2001

[57L]

[147L]

[None]

[]

2010-03-03 23:22:41

changed

mmokrejs

596

SV40

['SV40_661-830']

[None]

end-to-end_full-length_mRNA

The SV40 late 19S long-spliced mRNA derived from transcription start site in genomic position 325. This is the most abundant variant (11% relative of all early and late mRNAs) of the 19S late transcripts.

natural_transcript

[153]

[322]

[]

1895

[717L]

[1896L]

[None]

[]

2010-01-12 21:46:05

changed

mmokrejs

n-MYC

['n-MYC']

[None]

our_best_guess

Homo sapiens v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian) (MYCN), mRNA. Poly(A) tail dropped.

natural_transcript

[8]

[327]

[]

2000

[55L]

[143L]

[None]

[]

2009-10-13 13:41:30

changed

mmokrejs

574

eIF4GII

['eIF4GII-long']

[None]

hopefully_full-length_mRNA

Eukaryotic translation initiation factor 4 gamma, isoform II, long. Poly(A)-tail sequence was dropped.

natural_transcript

[288]

[614]

[]

2023

[699L]

[1840L]

[None]

[]

2009-10-13 13:40:28

changed

mmokrejs

573

eIF4GII

['eIF4GII']

[None]

hopefully_full-length_mRNA

9967556

Homo sapiens eIF4GII mRNA, complete cds. Poly(A)-tail sequence was dropped.

natural_transcript

[1]

[256]

[]

2020

[698L]

[1838L]

[None]

[]

2009-10-13 13:22:20

changed

mmokrejs

574

eIF4GII

['eIF4GII-long']

[None]

hopefully_full-length_mRNA

Eukaryotic translation initiation factor 4 gamma, isoform II, long. Poly(A)-tail sequence was dropped.

natural_transcript

[288]

[614]

[]

2023

[699L]

[1840L]

[None]

[]

2009-10-13 13:22:14

changed

mmokrejs

573

eIF4GII

['eIF4GII']

[None]

hopefully_full-length_mRNA

9967556

Homo sapiens eIF4GII mRNA, complete cds. Poly(A)-tail sequence was dropped.

natural_transcript

[1]

[256]

[]

2020

[698L]

[1838L]

[None]

[]

2009-10-13 11:39:08

changed

mmokrejs

548

eIF4G

['eIF4G']

[None]

hopefully_full-length_mRNA

219612

Homo sapiens mRNA for eukaryotic initiation factor 4 gamma (eIF4G), as derived from the gamma promoter.

natural_transcript

[1]

[357]

[]

1763

[680L]

[1764L]

[None]

[]

2009-10-13 11:13:32

changed

mmokrejs

548

eIF4G

['eIF4G']

[None]

hopefully_full-length_mRNA

219612

Homo sapiens mRNA for eukaryotic initiation factor 4 gamma (eIF4G), as derived from the gamma promoter.

natural_transcript

[1]

[357]

[]

1763

[680L]

[1764L]

[None]

[]

2009-10-13 11:13:20

changed

mmokrejs

576

eIF4GI

['eIF4GI-ext']

[None]

hopefully_full-length_mRNA

156523974

Homo sapiens eukaryotic translation initiation factor 4 gamma (eIF4GI-ext), transcript variant 1, as derived from the beta promoter. Poly(A)-tail sequence was dropped.

natural_transcript

[464]

[659]

[]

2019

[700L]

[1843L]

[None]

[]

2009-10-13 11:12:55

changed

mmokrejs

574

eIF4GII

['eIF4GII-long']

[None]

hopefully_full-length_mRNA

Eukaryotic translation initiation factor 4 gamma, isoform II, long. Poly(A)-tail sequence was dropped.

natural_transcript

[288]

[614]

[]

2023

[699L]

[1840L]

[None]

[]

2009-10-11 23:26:25

changed

mmokrejs

110

Apaf-1

['Apaf-1']

[None]

hopefully_full-length_mRNA

Homo sapiens apoptotic protease activating factor 1 (Apaf-1) mRNA, complete cds. Similar to C. elegans cell death gene ced-4.

natural_transcript

[504]

[734]

[]

2008

[117L]

[1130L]

[43L]

[]

[33L]

[26L]

[]

2009-10-10 02:32:48

changed

mmokrejs

573

eIF4GII

['eIF4GII']

[None]

hopefully_full-length_mRNA

9967556

Homo sapiens eIF4GII mRNA, complete cds. Poly(A)-tail sequence was dropped.

natural_transcript

[1]

[256]

[]

2020

[698L]

[1838L]

[None]

[]

2009-10-10 02:09:05

changed

mmokrejs

491

AQP4

['AQP4']

[None]

our_best_guess

Human mercurial-insensitive water channel mRNA, form 1, complete cds.

natural_transcript

[10]

[293]

[]

1608

[625L]

[1606L]

[41L]

[]

[24L]

[]

2009-09-18 13:13:41

changed

mmokrejs

321

FMDV

['FMDV_type_C']

[None]

end-to-end_full-length_mRNA

6318187

Foot-and-mouth disease virus (FMDV) strain C, isolate c-s8c1, genomic RNA.

natural_transcript

[578]

[1038]

[]

1036

[471L]

[1037L]

[None]

[]

[40L, 24L, 41L, 42L, 43L, 44L, 45L, 46L]

[45L]

[]

2009-09-17 18:07:52

submitted

mmokrejs

638

['HCV_type_1b', 'EMCV-R']

['functional', 'functional']

end-to-end_full-length_mRNA

5441834

Hepatitis C virus replicon I377/NS3-3'UTR.

plasmid_with_promoter_and_putative_IRES_without_translational_characterization

[1, 1190]

[341, 1800]

[]

2042

[758L, 759L]

[301L, 2043L]

[None, None]

[]

2009-09-17 18:03:35

reviewed

mmokrejs

438

Cat-1

['Cat-1_224']

[None]

our_best_guess

Rattus norvegicus cationic amino acid transporter-1 (Cat1) gene, merged from GI:18542255 and GI:33943114.

natural_transcript

[47]

[270]

[]

1411

[571L]

[1415L]

[None]

[]

2009-09-17 15:12:51

changed

mmokrejs

438

Cat-1

['Cat-1_224']

[None]

our_best_guess

Rattus norvegicus cationic amino acid transporter-1 (Cat1) gene, merged from GI:18542255 and GI:33943114.

natural_transcript

[47]

[270]

[]

1411

[571L]

[1415L]

[None]

[]

2009-09-17 12:50:48

changed

mmokrejs

140

EMCV-R

['EMCV-R']

[None]

end-to-end_full-length_mRNA

Encephalomyocarditis virus, complete genome

natural_transcript

[257]

[832]

[]

684

[156L]

[685L]

[None]

[]

[40L]

[]

2009-09-17 03:50:16

reviewed

mmokrejs

637

EV71

['EV71_1-748']

[None]

end-to-end_full-length_mRNA

66967945

Human enterovirus 71 strain pinf7-54A from Taiwan, complete genome.

natural_transcript

[1]

[748]

[]

2040

[757L]

[2041L]

[None]

[]

2009-09-17 03:48:52

submitted

mmokrejs

637

EV71

['EV71_1-748']

[None]

end-to-end_full-length_mRNA

66967945

Human enterovirus 71 strain pinf7-54A from Taiwan, complete genome.

natural_transcript

[1]

[748]

[]

2040

[757L]

[2041L]

[None]

[]

2009-09-17 02:20:30

changed

mmokrejs

596

SV40

['SV40_661-830']

[None]

end-to-end_full-length_mRNA

natural_transcript

[153]

[322]

[]

1895

[717L]

[1896L]

[None]

[]

2009-09-17 00:00:41

changed

mmokrejs

337

IGF2

['IGF2_leader2']

[None]

both_UTRs_incomplete

Homo sapiens insulin-like growth factor 2, leader 2 mRNA produced from P2 promoter (5.0 kb) in fetal tissues and transformed cells (possibly incomplete UTRs).

natural_transcript

[200]

[320]

[]

1091

[486L]

[1092L]

[46L]

[]

[14L]

[]

2009-09-16 23:59:29

changed

mmokrejs

337

IGF2_leader2

['IGF2_leader2']

[None]

both_UTRs_incomplete

Homo sapiens insulin-like growth factor 2, leader 2 mRNA produced from P2 promoter (5.0 kb) in fetal tissues and transformed cells (possibly incomplete UTRs).

natural_transcript

[200]

[320]

[]

1091

[486L]

[1092L]

[46L]

[]

[14L]

[]

2009-09-16 23:42:47

changed

mmokrejs

337

IGF2

['IGF2']

[None]

both_UTRs_incomplete

Homo sapiens insulin-like growth factor 2, leader 2 mRNA produced from P2 promoter (5.0 kb) in fetal tissues and transformed cells (possibly incomplete UTRs).

natural_transcript

[200]

[320]

[]

1091

[486L]

[1092L]

[46L]

[]

[14L]

[]

2009-09-13 22:14:20

changed

mmokrejs

CrPV

['CrPV_5NCR', 'CrPV_IGR']

[None, None]

end-to-end_full-length_mRNA

21321708

Cricket paralysis virus (Dicistroviridae) nonstructural polyprotein and structural polyprotein genes, complete genome.

natural_transcript

[1, 6025]

[708, 6216]

[]

101

[40L, 119L]

[109L, 692L]

[None, None]

[]

[44L]

[]

2009-09-13 21:50:58

changed

mmokrejs

370

[]

promoter-less_plasmid_without_putative_IRES

[]

2009-09-05 13:13:08

changed

mmokrejs

596

SV40

['SV40_661-830']

[None]

end-to-end_full-length_mRNA

The SV40 late 19S long-spliced mRNA derived from transcription start site in genomic position 325. This is the most abundant variant (11% relative to all early and late mRNAs) of the 19S late transcripts.

natural_transcript

[153]

[322]

[]

1895

[717L]

[1896L]

[None]

[]

2009-09-05 13:11:04

changed

mmokrejs

577

FeLV-Notch2

['FeLV-Notch2']

[None]

3UTR_incomplete

Spliced subgenomic FeLV-Notch2 transcript with env gene replaced with part of Notch2 gene transcribed from the FeLV retroviral promoter. The transcript does not contain complete CDS region of the Notch2 protein but only the intracellular domain (ICD).

natural_transcript

[582]

[819]

[]

1860

[701L]

[1856L]

[None]

[]

2009-09-05 13:07:58

changed

mmokrejs

598

['PV_type3_Leon']

[None]

hopefully_full-length_mRNA

332895

Poliovirus P3/Leon/37 (type 3), complete genome.

natural_transcript

[1]

[742]

[]

1910

[719L]

[1912L]

[None]

[]

[43L]

[]

2009-09-04 15:04:05

changed

mmokrejs

['c-myc_1-395']

['functional']

both_UTRs_incomplete

Full-length 5'-UTR (1-395 bp) of c-myc mRNA transcribed from major P2 promoter inserted between renilla and firefly luciferases as PvuII-NcoI insert

plasmid_with_promoter_and_putative_IRES_translationally_characterized

[1178]

[1571]

['in vivo', 'in vivo', 'in vivo', 'in vivo', 'in vivo', 'in vivo', 'in vivo']

[None, None, None, None, None, None, None]

['100.000', '769.000', '0', '100.000', '100.000', '667.000', '165.000']

['None', '100.000', 'None', 'None', 'None', '100.000', '100.000']

['1.700', '10.000', '0', '1.400', '0', '11.000', '2.500']

[None, 'HRV-2', None, None, None, 'EMCV-R', 'EMCV-R']

['endogenous_nuclear_RNA_Pol_II_transcript', 'endogenous_nuclear_RNA_Pol_II_transcript', 'endogenous_cytoplasmic_uncapped_T7_transcript_without_polyA_tail', 'endogenous_nuclear_RNA_Pol_II_transcript', 'endogenous_nuclear_RNA_Pol_II_transcript', 'endogenous_nuclear_RNA_Pol_II_transcript', 'endogenous_nuclear_RNA_Pol_II_transcript']

1157

[25L]

[1159L]

[None]

[41L, 418L, 419L, 427L, 516L, 520L, 525L]

[]

2009-09-04 15:01:31

changed

mmokrejs

231

[]

our_best_guess

Putative in vitro derived T7 run-off transcript from BamHI linearized pRF plasmid.

negative_control_plasmid_with_promoter_and_without_putative_IRES

[]

1136

[]

2009-09-04 14:58:55

changed

mmokrejs

184

[]

3UTR_incomplete

Putative in vivo transcript from an empty vector pRF/pGL3R used as a negative control in many experiments. Although the plasmid sequence is known the exact location of the transcribed region is unknown. Our guess is based on the pDsRed2-C1 vector description from Clontech (Catalog #6974-1) and we conclude the major transcription start points could be at positions: 146, 184, 190, 195. The mRNA sequence used here starts from the most downstream putative transcription start site (5'-TATTCCAGAAGTAGTGA...) and continues to the end of the late SV40 poly(A) signal sequence (...AGTAAAACCTCTACAAATGTGGTA-3'). The chimeric intron in the transcribed region 276-408 is omitted from this mRNA sequence (information derived from GI:56089682).

negative_control_plasmid_with_promoter_and_without_putative_IRES

[]

1134

[]

2009-09-04 12:19:56

reviewed

mmokrejs

595

['rc_Apaf-1']

['defective']

hopefully_full-length_mRNA

Putative in vivo CMV promoter-derived transcript produced from bicistronic plasmid pbetaGAL/rc_Apaf1/CAT which comprises beta galactosidase and chloramphenicol acetyltransferase as the first and the second cistron respectively and the whole part of human Apaf-1 5' UTR (nt from +3 to nt -577 of the original sequence) mRNA cloned between them in reverse complement orientation. The sequence ends at its 3'-end right after the poly(A) signal from BGH mRNA and thus the 3'-UTR might be slightly wrong.

plasmid_with_promoter_and_putative_IRES_without_translational_characterization

[3621]

[4200]

[]

1892

[716L]

[1995L]

[None]

[]

2009-09-04 12:19:56

reviewed

mmokrejs

594

['rc_DAP5']

['defective']

hopefully_full-length_mRNA

Putative in vivo CMV promoter-derived transcript produced from bicistronic plasmid pbetaGAL/rc_DAP5/CAT which comprises beta galactosidase and chloramphenicol acetyltransferase as the first and the second cistron respectively and the part of human DAP5 5' UTR (nt from -1 to nt -305 of the original sequence) mRNA cloned between them in reverse complement orientation. The sequence ends at its 3'-end right after the poly(A) signal from BGH mRNA and thus the 3'-UTR might be slightly wrong.

plasmid_with_promoter_and_putative_IRES_without_translational_characterization

[3621]

[3925]

[]

1889

[715L]

[1891L]

[None]

[]

2009-09-04 12:19:56

reviewed

mmokrejs

636

[]

hopefully_full-length_mRNA

Bicistronic in vivo transcript mRNA with beta galactosidase and chloramphenicol acetyl transferase genes. The sequence ends at its 3'-end right after the poly(A) signal from BGH mRNA and thus the 3'-UTR might be slightly wrong.

negative_control_plasmid_with_promoter_and_without_putative_IRES

[]

2034

[]

2009-09-04 12:19:56

reviewed

mmokrejs

630

['DAP5']

['functional']

hopefully_full-length_mRNA

Putative in vivo CMV promoter-derived transcript produced from bicistronic plasmid pbetaGAL/DAP5/CAT which comprises beta galactosidase and chloramphenicol acetyltransferase as the first and the second cistron respectively and the whole part of human DAP5 5' UTR (nt from -305 to nt -1 of the original sequence) mRNA cloned between them. The sequence ends at its 3'-end right after the poly(A) signal from BGH mRNA and thus the 3'-UTR might be slightly wrong.

plasmid_with_promoter_and_putative_IRES_translationally_characterized

[3621]

[3925]

['in vivo', 'in vivo', 'in vivo', 'in vivo', 'in vivo', 'in vivo']

[None, None, None, None, None, None]

['4.880', '2.300', '1.270', '1.000', '0.800', '0.070']

['100.000', '100.000', '100.000', '100.000', '100.000', '100.000']

['1.250', '1.000', '0.770', '0.350', '0.350', '0.290']

['EMCV', 'EMCV', 'EMCV', 'EMCV', 'EMCV', 'EMCV']

['endogenous_nuclear_RNA_Pol_II_transcript', 'endogenous_nuclear_RNA_Pol_II_transcript', 'endogenous_nuclear_RNA_Pol_II_transcript', 'endogenous_nuclear_RNA_Pol_II_transcript', 'endogenous_nuclear_RNA_Pol_II_transcript', 'endogenous_nuclear_RNA_Pol_II_transcript']

1990

[751L]

[1845L]

[None]

[648L, 649L, 650L, 651L, 652L, 653L]

[]

2009-09-04 12:19:56

reviewed

mmokrejs

631

['Apaf-1']

['functional']

hopefully_full-length_mRNA

Putative in vivo CMV promoter-derived transcript produced from bicistronic plasmid pbetaGAL/Apaf1/CAT which comprises beta galactosidase and chloramphenicol acetyltransferase as the first and the second cistron respectively and the whole part of human Apaf-1 5' UTR (nt from -577 to nt +3 of the original sequence) mRNA cloned between them. The sequence ends at its 3'-end right after the poly(A) signal from BGH mRNA and thus the 3'-UTR might be slightly wrong.

plasmid_with_promoter_and_putative_IRES_translationally_characterized

[3621]

[4200]

['in vivo', 'in vivo', 'in vivo', 'in vivo', 'in vivo', 'in vivo']

[None, None, None, None, None, None]

['4.370', '2.100', '0.730', '0.230', '0.530', '0.070']

['100.000', '100.000', '100.000', '100.000', '100.000', '100.000']

['1.250', '1.000', '0.770', '0.350', '0.350', '0.290']

['EMCV', 'EMCV', 'EMCV', 'EMCV', 'EMCV', 'EMCV']

1997

[752L]

[1999L]

[None]

[654L, 655L, 656L, 657L, 658L, 659L]

[]

2009-09-04 12:19:56

reviewed

mmokrejs

593

['BiP']

['functional']

hopefully_full-length_mRNA

Putative in vivo CMV promoter-derived transcript produced from bicistronic plasmid pbetaGAL/BiP/CAT which comprises beta galactosidase and chloramphenicol acetyltransferase as the first and the second cistron respectively and the whole part of human BiP 5' UTR (nt from -222 to nt -1 of the original sequence) mRNA cloned between them. The sequence ends at its 3'-end right after the poly(A) signal from BGH mRNA and thus the 3'-UTR might be slightly wrong.

plasmid_with_promoter_and_putative_IRES_translationally_characterized

[3621]

[3842]

['in vivo', 'in vivo', 'in vivo', 'in vivo', 'in vivo', 'in vivo']

[None, None, None, None, None, None]

['3.000', '3.000', '1.310', '0.310', '0.350', '0.490']

['100.000', '100.000', '100.000', '100.000', '100.000', '100.000']

['1.250', '1.000', '0.770', '0.350', '0.350', '0.290']

['EMCV', 'EMCV', 'EMCV', 'EMCV', 'EMCV', 'EMCV']

1886

[714L]

[1888L]

[None]

[625L, 626L, 627L, 628L, 629L, 630L]

[]

2009-09-04 12:19:56

reviewed

mmokrejs

592

['rc_BiP']

['defective']

hopefully_full-length_mRNA

Putative in vivo CMV promoter-derived transcript produced from bicistronic plasmid pbetaGAL/rc_BiP/CAT which comprises beta galactosidase and chloramphenicol acetyltransferase as the first and the second cistron respectively and the whole part of human BiP 5' UTR (nt from -1 to nt -222 of the original sequence) mRNA cloned between them in reverse complement orientation. The sequence ends at its 3'-end right after the poly(A) signal from BGH mRNA and thus the 3'-UTR might be slightly wrong.

plasmid_with_promoter_and_putative_IRES_without_translational_characterization

[3621]

[3842]

[]

1883

[713L]

[1885L]

[None]

[]

2009-09-04 12:19:56

reviewed

mmokrejs

632

['rc_XIAP']

['defective']

hopefully_full-length_mRNA

Putative in vivo CMV promoter-derived transcript produced from bicistronic plasmid pbetaGAL/rc_XIAP/CAT which comprises beta galactosidase and chloramphenicol acetyltransferase as the first and the second cistron respectively and the whole part of human XIAP 5' UTR (nt from -1 to nt -993 of the original sequence) mRNA cloned between them in reverse complement orientation. The sequence ends at its 3'-end right after the poly(A) signal from BGH mRNA and thus the 3'-UTR might be slightly wrong.

plasmid_with_promoter_and_putative_IRES_without_translational_characterization

[3621]

[4613]

[]

2005

[753L]

[2007L]

[None]

[]

2009-09-04 12:19:56

reviewed

mmokrejs

635

['c-myc']

['functional']

hopefully_full-length_mRNA

Putative in vivo CMV promoter-derived transcript produced from bicistronic plasmid pbetaGAL/myc/CAT which comprises beta galactosidase and chloramphenicol acetyltransferase as the first and the second cistron respectively and the part of human c-myc 5' UTR (nt from -350 to nt +2 of the original sequence) mRNA cloned between them. The sequence ends at its 3'-end right after the poly(A) signal from BGH mRNA and thus the 3'-UTR might be slightly wrong.

plasmid_with_promoter_and_putative_IRES_translationally_characterized

[3621]

[3972]

['in vivo', 'in vivo', 'in vivo', 'in vivo', 'in vivo', 'in vivo']

[None, None, None, None, None, None]

['3.060', '5.950', '3.230', '1.220', '0.350', '0.820']

['100.000', '100.000', '100.000', '100.000', '100.000', '100.000']

['1.250', '1.000', '0.770', '0.350', '0.350', '0.290']

['EMCV', 'EMCV', 'EMCV', 'EMCV', 'EMCV', 'EMCV']

2028

[756L]

[2030L]

[None]

[667L, 668L, 669L, 670L, 671L, 672L]

[]

2009-09-04 12:19:56

reviewed

mmokrejs

634

['rc_c-myc']

['defective']

hopefully_full-length_mRNA

Putative in vivo CMV promoter-derived transcript produced from bicistronic plasmid pbetaGAL/rc_myc/CAT which comprises beta galactosidase and chloramphenicol acetyltransferase as the first and the second cistron respectively and the part of human c-myc 5' UTR (nt from +2 to nt -350 of the original sequence) mRNA cloned between them in reverse complement orientation. The sequence ends at its 3'-end right after the poly(A) signal from BGH mRNA and thus the 3'-UTR might be slightly wrong.

plasmid_with_promoter_and_putative_IRES_without_translational_characterization

[3621]

[3972]

[]

2028

[755L]

[2030L]

[None]

[]

2009-09-04 12:19:56

reviewed

mmokrejs

244

['XIAP']

['functional']

hopefully_full-length_mRNA

Putative in vivo CMV promoter-derived transcript produced from bicistronic plasmid pbetaGAL/XIAP/CAT which comprises beta galactosidase and chloramphenicol acetyltransferase as the first and the second cistron respectively and the whole part of human XIAP 5' UTR (nt from -993 to nt -1 of the original sequence) mRNA cloned between them. The sequence ends at its 3'-end right after the poly(A) signal from BGH mRNA and thus the 3'-UTR might be slightly wrong.

plasmid_with_promoter_and_putative_IRES_translationally_characterized

[3621]

[4613]

['in vivo', 'in vivo', 'in vivo', 'in vivo', 'in vivo', 'in vivo', 'in vivo', 'in vivo', 'in vivo']

[None, None, None, None, None, None, None, None, None]

['100.000', '100.000', '37.500', '22.000', '12.100', '6.610', '11.000', '1.130', '100.000']

['None', 'None', '100.000', '100.000', '100.000', '100.000', '100.000', '100.000', 'None']

['0.019', '1.140', '1.250', '1.000', '0.770', '0.350', '0.350', '0.290', '0.880']

[None, None, 'EMCV', 'EMCV', 'EMCV', 'EMCV', 'EMCV', 'EMCV', None]

['exogenous_RNA_with_GpppG_cap_with_polyA_tail', 'endogenous_nuclear_RNA_Pol_II_transcript', 'endogenous_nuclear_RNA_Pol_II_transcript', 'endogenous_nuclear_RNA_Pol_II_transcript', 'endogenous_nuclear_RNA_Pol_II_transcript', 'endogenous_nuclear_RNA_Pol_II_transcript', 'endogenous_nuclear_RNA_Pol_II_transcript', 'endogenous_nuclear_RNA_Pol_II_transcript', 'endogenous_nuclear_RNA_Pol_II_transcript']

2004

[394L]

[828L]

[None]

[299L, 660L, 661L, 662L, 663L, 664L, 665L, 666L, 673L]

[]

2009-09-03 20:25:57

changed

vasek

244

['XIAP']

['functional']

hopefully_full-length_mRNA

plasmid_with_promoter_and_putative_IRES_translationally_characterized

[3621]

[4613]

['in vivo', 'in vivo', 'in vivo', 'in vivo', 'in vivo', 'in vivo', 'in vivo', 'in vivo', 'in vivo']

[None, None, None, None, None, None, None, None, None]

['100.000', '100.000', '37.500', '22.000', '12.100', '6.610', '11.000', '1.130', '100']

['None', 'None', '100.000', '100.000', '100.000', '100.000', '100.000', '100.000', 'None']

['0.019', '1.140', '1.250', '1.000', '0.770', '0.350', '0.350', '0.290', '0.88']

[None, None, 'EMCV', 'EMCV', 'EMCV', 'EMCV', 'EMCV', 'EMCV', None]

2004

[394L]

[828L]

[None]

[299L, 660L, 661L, 662L, 663L, 664L, 665L, 666L, 673L]

[]

2009-09-03 20:03:16

changed

vasek

472

['XIAP']

['functional']

promoter-less_plasmid_with_putative_IRES

[3896]

[4060]

[]

[606L]

[2039L]

[None]

[]

2009-09-03 19:21:43

changed

vasek

486

['XIAP']

['functional']

3UTR_possibly_incomplete

Putative in vivo CMV promoter-derived transcript produced from bicistronic plasmid pbetaGAL/5'(-162)/CAT which comprises beta galactosidase and chloramphenicol acetyl transferase as the first and the second cistron, respectively and the part of human XIAP mRNA (from nt -162 to nt -1 of the original sequence) mRNA. The sequence ends at its 3'-end right after the poly(A) signal from BGH mRNA and thus the 3'-UTR might be slightly wrong.

plasmid_with_promoter_and_putative_IRES_translationally_characterized

[3621]

[3782]

['in vivo', 'in vivo']

[None, None]

['100.000', '100.000']

['None', 'None']

['1.000', '0.300']

[None, None]

['endogenous_nuclear_RNA_Pol_II_transcript', 'endogenous_nuclear_RNA_Pol_II_transcript']

1592

[620L]

[1543L]

[38L]

[537L, 538L]

[]

[23L]

[]

2009-09-03 19:20:56

changed

vasek

487

['ELG1']

['functional']

hopefully_full-length_mRNA

Putative in vivo CMV promoter-derived transcript produced from bicistronic plasmid pBiCELG1 which comprises beta galactosidase and chloramphenicol acetyl transferase as the first and the second cistron, respectively and the part (from nt -803 to nt -461 of the original sequence)of 5' UTR from human ELG1 mRNA. The sequence ends at its 3'-end right after the poly(A) signal from BGH mRNA and thus the 3'-UTR might be slightly wrong.

plasmid_with_promoter_and_putative_IRES_translationally_characterized

[3626]

[4085]

['in vivo']

[None]

['7.300']

['100.000']

['0.300']

['XIAP']

['endogenous_nuclear_RNA_Pol_II_transcript']

1594

[621L]

[1545L]

[None]

[539L]

[]

2009-09-03 19:20:08

changed

vasek

488

['AQP4']

['functional']

hopefully_full-length_mRNA

Putative in vivo CMV promoter-derived transcript produced from bicistronic plasmid pBiCAQP4 which comprises beta galactosidase and chloramphenicol acetyl transferase as the first and the second cistron, respectively and almost the full length 5' UTR from human AQP4 mRNA (from nt -275 to nt -1 of the original sequence) and the first 7 nts (+1 to +7) from AQP4 ORF. The sequence ends at its 3'-end right after the poly(A) signal from BGH mRNA and thus the 3'-UTR might be slightly wrong.

plasmid_with_promoter_and_putative_IRES_translationally_characterized

[3626]

[3911]

['in vivo']

[None]

['2.000']

['100.000']

['0.300']

['XIAP']

['endogenous_nuclear_RNA_Pol_II_transcript']

1596

[622L]

[1551L]

[None]

[540L]

[]

2009-09-03 19:15:30

changed

vasek

244

['XIAP']

['functional']

hopefully_full-length_mRNA

plasmid_with_promoter_and_putative_IRES_translationally_characterized

[3621]

[4613]

['in vivo', 'in vivo', 'in vivo', 'in vivo', 'in vivo', 'in vivo', 'in vivo', 'in vivo', 'in vivo']

[None, None, None, None, None, None, None, None, None]

['100.000', '100.000', '37.500', '22.000', '12.100', '6.610', '11.000', '1.130', '150.000']

['None', 'None', '100.000', '100.000', '100.000', '100.000', '100.000', '100.000', 'None']

['0.019', '1.140', '1.250', '1.000', '0.770', '0.350', '0.350', '0.290', '1.000']

[None, None, 'EMCV', 'EMCV', 'EMCV', 'EMCV', 'EMCV', 'EMCV', None]

2004

[394L]

[828L]

[None]

[299L, 660L, 661L, 662L, 663L, 664L, 665L, 666L, 673L]

[]

2009-09-03 19:11:16

changed

vasek

237

[]

hopefully_full-length_mRNA

negative_control_plasmid_with_promoter_and_without_putative_IRES

[]

2031

[]

2009-09-03 19:01:37

submitted

vasek

636

[]

hopefully_full-length_mRNA

negative_control_plasmid_with_promoter_and_without_putative_IRES

[]

2034

[]

2009-09-03 14:55:13

changed

mmokrejs

c-myc

['c-myc']

[None]

3UTR_incomplete

Homo sapiens cDNA of c-myc proto-oncogene. Poly(A) tail dropped.

natural_transcript

[1]

[393]

[]

1993

[35L]

[1131L]

[20L]

[]

[2L, 8L, 9L, 10L, 11L, 12L]

[1L]

[]

2009-09-03 14:14:10

changed

mmokrejs

109

XIAP

['XIAP_5-464', 'XIAP_305-466']

[None, None]

nonexisting_chimera_of_GenBank_record_and_tested_IRES_fragment

Assembled chimeric sequence created by utilization of the 5'-UTR from GI:28290426 with the remaining sequence from GI:32528298

natural_transcript

[5, 305]

[464, 466]

[]

681

[116L, 589L]

[281L, 1543L]

[None, 38L]

[]

[15L]

[]

2009-09-03 14:00:17

changed

mmokrejs

c-myc

['c-myc']

[None]

3UTR_incomplete

Homo sapiens cDNA of c-myc proto-oncogene. Poly(A) tail dropped.

natural_transcript

[1]

[393]

[]

1993

[35L]

[1131L]

[20L]

[]

[2L, 8L, 9L, 10L, 11L, 12L]

[1L]

[]

2009-09-03 13:54:41

changed

mmokrejs

571

VEGF-A

['VEGF-A_-133_-1']

[None]

our_best_guess

160358806

Mus musculus vascular endothelial growth factor A (Vegfa), transcript variant 3, mRNA. Poly(A)-tail sequence was dropped.

natural_transcript

[889]

[1021]

[]

2018

[696L]

[1834L]

[None]

[]

2009-09-03 13:50:39

changed

mmokrejs

109

XIAP

['XIAP_5-464', 'XIAP_305-466']

[None, None]

nonexisting_chimera_of_GenBank_record_and_tested_IRES_fragment

Assembled chimeric sequence created by utilization of the 5'-UTR from GI:28290426 "BX119811 Soares_placenta_8to9weeks_2NbHP8to9W Homo sapiens cDNA clone IMAGp998G014639 ; IMAGE:1893144" with the remaining sequence from Refseq sequence GI:32528298.

natural_transcript

[5, 305]

[464, 466]

[]

681

[116L, 589L]

[281L, 1543L]

[None, 38L]

[]

[15L]

[]

2009-09-03 13:45:39

changed

mmokrejs

109

XIAP

['XIAP_5-464', 'XIAP_305-466']

[None, None]

nonexisting_chimera_of_GenBank_record_and_tested_IRES_fragment

natural_transcript

[5, 305]

[464, 466]

[]

681

[116L, 589L]

[281L, 1543L]

[None, 38L]

[]

[15L]

[]

2009-09-03 13:40:02

changed

mmokrejs

571

VEGF-A

['VEGF-A_-133_-1']

[None]

our_best_guess

160358806

Mus musculus vascular endothelial growth factor A (Vegfa), transcript variant 3, mRNA. Poly(A)-tail sequence was dropped.

natural_transcript

[889]

[1021]

[]

2018

[696L]

[1834L]

[None]

[]

2009-09-03 13:38:32

changed

mmokrejs

Hif1a

['HIF1a']

[None]

our_best_guess

7363432

Mus musculus hypoxia inducible factor 1, alpha subunit (Hif1a), mRNA. Poly(A) tail dropped.

natural_transcript

[1]

[257]

[]

1992

[1L]

[2L]

[None]

[]

2009-09-03 13:37:27

changed

mmokrejs

c-myc

['c-myc']

[None]

3UTR_incomplete

Homo sapiens cDNA of c-myc proto-oncogene. Poly(A) tail dropped.

natural_transcript

[1]

[393]

[]

1993

[35L]

[1131L]

[20L]

[]

[2L, 8L, 9L, 10L, 11L, 12L]

[1L]

[]

2009-09-03 13:33:06

changed

mmokrejs

Hif1a

['HIF1a']

[None]

our_best_guess

7363432

Mus musculus hypoxia inducible factor 1, alpha subunit (Hif1a), mRNA. Poly(A) tail dropped.

natural_transcript

[1]

[257]

[]

1992

[1L]

[2L]

[None]

[]

2009-09-03 13:29:04

changed

mmokrejs

140

EMCV-R

['EMCV-R']

[None]

end-to-end_full-length_mRNA

Encephalomyocarditis virus, complete genome

natural_transcript

[257]

[832]

[]

684

[156L]

[685L]

[None]

[]

[40L]

[]

2009-09-03 13:15:01

changed

mmokrejs

Hif1a

['HIF1a']

[None]

our_best_guess

7363432

Mus musculus hypoxia inducible factor 1, alpha subunit (Hif1a), mRNA. Poly(A) tail dropped.

natural_transcript

[1]

[257]

[]

1992

[1L]

[2L]

[None]

[]

2009-09-03 13:12:41

changed

mmokrejs

140

EMCV-R

['EMCV-R']

[None]

end-to-end_full-length_mRNA

Encephalomyocarditis virus, complete genome

natural_transcript

[257]

[832]

[]

684

[156L]

[685L]

[None]

[]

[40L]

[]

2009-09-03 13:05:58

changed

mmokrejs

571

VEGF-A

['VEGF-A_-133_-1']

[None]

our_best_guess

160358806

Mus musculus vascular endothelial growth factor A (Vegfa), transcript variant 3, mRNA. Poly(A)-tail sequence was dropped.

natural_transcript

[889]

[1021]

[]

2018

[696L]

[1834L]

[None]

[]

2009-09-03 12:47:06

changed

mmokrejs

570

BiP

['BiP_-222_-3']

[None]

hopefully_full-length_mRNA

1143491

H.sapiens mRNA for BiP protein mRNA. Poly(A)-tail sequence was dropped.

natural_transcript

[1]

[222]

[]

2017

[693L]

[1816L]

[None]

[]

2009-09-03 12:33:11

changed

mmokrejs

Hif1a

['HIF1a']

[None]

our_best_guess

7363432

Mus musculus hypoxia inducible factor 1, alpha subunit (Hif1a), mRNA. Poly(A) tail dropped.

natural_transcript

[1]

[257]

[]

1992

[1L]

[2L]

[None]

[]

Last change to the database: 2019-03-18 09:32:49 GMT+1