IRESite_Id:621 summary record describing characteristics of DCV

IRESite: The database of experimentally verified IRES structures

The nucleic acid data:

IRESite Id: `621`	Version: `0`
Originaly submitted by: Martin Mokrejš	Submission date: `2009-08-29 20:30:39`
Reviewed by: Martin Mokrejš

IRESite record type:

natural_transcript

The shape of the nucleic acid molecule translated: `linear`	The quality of the mRNA/+RNA sequence: `hopefully_full-length_mRNA`
The abbreviated name of the virus/gene coding for this mRNA/+RNA molecule: `DCV`	The genetic origin of this natural mRNA/+RNA: `viral`

The GenBankId GI:# number of exactly this mRNA/+RNA sequence:
2388672

The mRNA/+RNA description:

Drosophila C virus strain EB, complete genome.

The mRNA/+RNA sequence represented in the +DNA notation:

TTTATATCGT GTGTACATAT AAATATGTAC ACACGGCTTT TAGGTAGAAT ATTGTTTTCA ATGTTGATTT TAAAGGTAAC TTTGGTTATT ATGCTTTACG 
^1         ^11        ^21        ^31        ^41        ^51        ^61        ^71        ^81        ^91        

GTTTTCATTG TTGATGGTAT TTGTGGCCTG CGGTCCCTAA TTGTTGAATT ATTTATTCTG ATACGTTGTT TTCATTGTTG ATGGTAAGGA TTCTTATTTT 
^101       ^111       ^121       ^131       ^141       ^151       ^161       ^171       ^181       ^191       

GAAGTGGTTT TTCAGAAGAT AACTCTAAAT ATGAATTATG CCTTATTGTT TTCAATGTTG ATGGCCTTCG TTTAAATACT CTTTGTTAAT GACGGTAATC 
^201       ^211       ^221       ^231       ^241       ^251       ^261       ^271       ^281       ^291       

AAAGATTACA TCTCAAACTT AGATTAATAT TTTTAAGTAG GGTATACTGA GTTAGTCCTC TCTCTTTACT GATTTTGATA TCTGGTAATT GACTTCGAAG 
^301       ^311       ^321       ^331       ^341       ^351       ^361       ^371       ^381       ^391       

AAAGATGCGT CTTTTGGATT TGTAATGACT GGGCCTTAAG TTCATAGGTG TTATTACATG GAGGAACACA TTACTTTGGT TGATGATGAT GTTTTGATGA 
^401       ^411       ^421       ^431       ^441       ^451       ^461       ^471       ^481       ^491       

TGACTTTCAA TGTATGTGCT TATGTTAAGC CTGACATAAG AACTTACTAG TTTGCATAAT GCAAAGGGTT AGTATATGAT TTTTAGTATG TGGATTTTGA 
^501       ^511       ^521       ^531       ^541       ^551       ^561       ^571       ^581       ^591       

CACTGCCTTT GATTAGGATG TGTGAATGAT TTTGAAACAT ATTAAGATGT TTATACGAGC GTGTTGTTTA CTATTTTCAG GATATGTGGA AGCGGTTGTG 
^601       ^611       ^621       ^631       ^641       ^651       ^661       ^671       ^681       ^691       

TATGATCTAT ACGCACATTT AGTTCCCAGA GGGCGTTGTC GTCTCCCCCT AAGCAAGGGA GAAACACGTG GCACATGATC TTGCGCTTAA CGATAAAAAT 
^701       ^711       ^721       ^731       ^741       ^751       ^761       ^771       ^781       ^791       

GGAATCTGAT AAAAGTATGG CCTGTTTAAA TAGAATTTTG ATGAATAAGA TGATGTTTGT GGAAGATAAG ATCTCTACCC TTAAGATGGT TGCTGATTAT 
^801       ^811       ^821       ^831       ^841       ^851       ^861       ^871       ^881       ^891       

TATCAAAAAG AAGTAAAGTA TGATTTTGAT GCAGTTGAAT CTCCCCGTGA GGCACCTGTA TTTAGATGTA CTTGTCGATT CCTTGGTTAT ACCATTATGA 
^901       ^911       ^921       ^931       ^941       ^951       ^961       ^971       ^981       ^991       

CTCAAGGCAT CGGTAAGAAG AATCCGAAAC AGGAAGCTGC ACGTCAGATG TTGCTCTTGT TATCAGGAGA TGTTGAGACT AACCCTGGAC CCGTTCAATC 
^1001      ^1011      ^1021      ^1031      ^1041      ^1051      ^1061      ^1071      ^1081      ^1091      

GCGCCCCGTG TATTATCGTT ACAACGACCC TAGATATACA CGGTTGGAAA AAGCTATTGA ACGTCGAGAC GATAAAATTA AAACATTAAT TAAAGAGTTG 
^1101      ^1111      ^1121      ^1131      ^1141      ^1151      ^1161      ^1171      ^1181      ^1191      

CGTCGACAAA TCAAAAATAG GAAAATTTAT TCCCAAGGAA TGTTTGATAA ATTAACTAAA CAAATTTCTG ATGGGATAAA AGATGGTGTT GGCTCTGAAC 
^1201      ^1211      ^1221      ^1231      ^1241      ^1251      ^1261      ^1271      ^1281      ^1291      

AGATGAATGG AAATTTGACT CGTATTTGTG ATTTCCTAGA GAACACTCTT CCTGGGTTAC AAGCAAATAT TCAAGCCACT GTGATTGATA CAACAGACAA 
^1301      ^1311      ^1321      ^1331      ^1341      ^1351      ^1361      ^1371      ^1381      ^1391      

ATATGTTTCT TTAAAAGAGG ATATTATGAA GATTGTTTTA GTGATATTGC TTGTTCGTCT TTTAATGGTT TGGAAGAAGT ATCGTGCTTC TCTGTGTGTT 
^1401      ^1411      ^1421      ^1431      ^1441      ^1451      ^1461      ^1471      ^1481      ^1491      

ATTTTAATCT TTATTTTTAA ATTTTATGGA TTCGATCAAA AGTTGATTGA TTTAATTATG GATTTGAAGA ATAAAATATT TTCACAGGGT GCATTGGAAG 
^1501      ^1511      ^1521      ^1531      ^1541      ^1551      ^1561      ^1571      ^1581      ^1591      

ATACAGTTGA GGAGGTTGTA TATCATCCTT GGTTCCATAC GTGTGGAAAA ATCATCTTTG CGGTTATGGC TTTCTTAACA ATTAAGAAAA TTCCTGGTAA 
^1601      ^1611      ^1621      ^1631      ^1641      ^1651      ^1661      ^1671      ^1681      ^1691      

ACAGGATTGG GATAGTTACA TAACACGTTT AGATCGTATC CCAAAATCTA TTGAGGGAGC TAAAAAGATC ACTGATTACT GTTCAGAATA TTTTAATATT 
^1701      ^1711      ^1721      ^1731      ^1741      ^1751      ^1761      ^1771      ^1781      ^1791      

GCTAATGATC AGATCAAGAT GATGGTTCTT GGAAAGACTA AAGAAGAATT GCAACGTGCT AATGGACTAT ATGGAGAAAT TCAAGCTTGG GCTCAAGAGG 
^1801      ^1811      ^1821      ^1831      ^1841      ^1851      ^1861      ^1871      ^1881      ^1891      

TTCGCCAGTA TTTGGAATTG GATCAACGGA ATAAAATTGA TCTAGATACT GAAACCGCAA ATCGTGTTGA ACAACTTTGG ATAAAGGGCT TGAAATTCAA 
^1901      ^1911      ^1921      ^1931      ^1941      ^1951      ^1961      ^1971      ^1981      ^1991      

GAGTGAACCC CTTTTGAGTA AGGAAATGTC AGCTTTAGTT CATACAACTC TTTTACCAGC TAAGCAATTG TACGAGTATG TATCGTGTTC TCCTGTTAAA 
^2001      ^2011      ^2021      ^2031      ^2041      ^2051      ^2061      ^2071      ^2081      ^2091      

GGGGGAGGAC CACGTATGCG TCCAATTTGT TTATGGTTGG TAGGTGAATC AGGAGTTGGT AAGACTGAAA TGGTATATCC ATTGTGCATT GATGTTCTTC 
^2101      ^2111      ^2121      ^2131      ^2141      ^2151      ^2161      ^2171      ^2181      ^2191      

GGGAAATGGG GATGATTAAG AAAGATGATT TTCATCATCA AGTTTATGGT CGTCAAGTTG AAACTGAATT CTGGGATGGT TATAAAGGAC AGAAAATTGT 
^2201      ^2211      ^2221      ^2231      ^2241      ^2251      ^2261      ^2271      ^2281      ^2291      

CATTTATGAT GATGCATTTC AGAAGAAAGA TGACAAAACA GCAGCTAACC CAGAAATTTT TGAGGTTATT CGCTCTTGCA ACACTTTTCC TCAGCATTTA 
^2301      ^2311      ^2321      ^2331      ^2341      ^2351      ^2361      ^2371      ^2381      ^2391      

CATATGGCAG CTCTTCATGA TAAAAATACT TTTTCTGCTG CTGAATTACT CTTATATACC ACTAATGATT ATAATGTTAA GCTGGAATCT ATTACTTTTC 
^2401      ^2411      ^2421      ^2431      ^2441      ^2451      ^2461      ^2471      ^2481      ^2491      

CCGATGCTTT CTTTAATCGT ATGGGCGATA TGGCTTATAA AGTTAGTCCT AAGAAAGAGT ATGGTATTGA AACCGAGAAA GGGAATTCAG GTAAAACTTA 
^2501      ^2511      ^2521      ^2531      ^2541      ^2551      ^2561      ^2571      ^2581      ^2591      

TTTAAAATTG GATAAGAGTA AATTGGACAA AACAAAAGCT ATTGACCTTT CAGTGTATGA ATTCCAAAAA ATTGTACGTG ACGAGAAAAG TGATGCAGGT 
^2601      ^2611      ^2621      ^2631      ^2641      ^2651      ^2661      ^2671      ^2681      ^2691      

TGGATTGATT CTGGATCACC CTTGGACTAT GAAGATTTTG CTAAATTAGT GTGTTCAAAA TGGAAAGAAG CGAAACAATC TTCAATGAAT AAATTGAAAT 
^2701      ^2711      ^2721      ^2731      ^2741      ^2751      ^2761      ^2771      ^2781      ^2791      

TTTTGGAAGA ATATGCTATT CGTGCTCAGG TTGGATCAGA AGAAAATTCT GAATATGGTG ATTGTATAGA TTTTGTCGAT GATATTGCCA AACGCTTACA 
^2801      ^2811      ^2821      ^2831      ^2841      ^2851      ^2861      ^2871      ^2881      ^2891      

AAAAGGTGAA ACTCTTGAAG AAATAGAGTT TGATTATGCC TCAGATCCAG AGATGTTTAC TCAATACTAT CATTTTAAAT CTACAATTAA ACCGGCATCG 
^2901      ^2911      ^2921      ^2931      ^2941      ^2951      ^2961      ^2971      ^2981      ^2991      

CGTTGGCAGA AGTATAAGGA TCGGATGGAC ATTTGTTTGA GCGACTGTAA GACTTATTTA GCAAAGAAAT ACGAAGAAAT TAAGAAAATT CTTGCCGAAC 
^3001      ^3011      ^3021      ^3031      ^3041      ^3051      ^3061      ^3071      ^3081      ^3091      

ATCCTATCTT GACGATTTTA GGAATGATAG GGGTTGCCTT ATCTGCTCTG GCAATGTACT ATTGGTTTTC TAAATCGTTG GATCCTGTAG AAGCCGAGGT 
^3101      ^3111      ^3121      ^3131      ^3141      ^3151      ^3161      ^3171      ^3181      ^3191      

TGCTCCTTCT GGTGACGCTA AAACAGTGCG CTTACCAAGG AAACTCGTTG AGATTGGTGC TTCTGGAGAT GTTAAAACAC AGAAGATTGT GAAACCCGTT 
^3201      ^3211      ^3221      ^3231      ^3241      ^3251      ^3261      ^3271      ^3281      ^3291      

GTAGAGACCG AATGGCATCG TAACAATAAA GGAGAGATTG AAATTTCTTG TGATGAATGT GGTATGCATA GGATGTCTGC ATTTAACAAT ATGACAGATG 
^3301      ^3311      ^3321      ^3331      ^3341      ^3351      ^3361      ^3371      ^3381      ^3391      

AAGAATTTGA TAACTGTACA TATGAAGATT TGAATAAGGA CCAGAAACGT GAACTTGCCC AGTGGTCTAC TAAAGATTCT TGGTTAGGTC GATTCTTTTT 
^3401      ^3411      ^3421      ^3431      ^3441      ^3451      ^3461      ^3471      ^3481      ^3491      

GAGTCGAGAT CGCAAGAATA AGGTTGGAAT TTGGGCCGAA GTGGGACAAT CAGGTGATGT TAAAACAAAT AAAGCTCAGA TTAAACGTGT TGAAGCTGGA 
^3501      ^3511      ^3521      ^3531      ^3541      ^3551      ^3561      ^3571      ^3581      ^3591      

GCCGAAGAAT TAGTTACTGT TGCTTTAACT CAAGGTTGTT CTGATGATGC TGCACACAAT TTGATGATTG ACGTTTTCCA AAAAAATACA TATAGAATGT 
^3601      ^3611      ^3621      ^3631      ^3641      ^3651      ^3661      ^3671      ^3681      ^3691      

CATACTTCCG TGGAGACAAG CGTTATCAAC TTGGAAATTG TACATTTGTT CGTGGTTGGT CTTTTATTAT GCCATATCAT TTTGTACAGG CTGTGTTTGC 
^3701      ^3711      ^3721      ^3731      ^3741      ^3751      ^3761      ^3771      ^3781      ^3791      

GCGAAGATTG CCACCTAACA CGATTATTTC TTTGTCCCAA CAGATGTCTG AAGATTTAAT GCAAATTCCA TTATCACACT TCTTTTCTGC TGGTGTTGAC 
^3801      ^3811      ^3821      ^3831      ^3841      ^3851      ^3861      ^3871      ^3881      ^3891      

AATTTTTATT TAACAGATAA TTGTGTGCGC TTGCCATTTA AAAATGGAGA TTTTCGCGAT TGTGTTATGG TTAATTTACA TTCACGAATG TGCACGCCAC 
^3901      ^3911      ^3921      ^3931      ^3941      ^3951      ^3961      ^3971      ^3981      ^3991      

ATCGTGATTT GGTTCGGCAT TTTATTTTAA CTTCTGATCA AGGTAAATTG AAGGGATCTT TTAGTGGTGC AATGGCAACT TTCCATGTTA ACAATATGGG 
^4001      ^4011      ^4021      ^4031      ^4041      ^4051      ^4061      ^4071      ^4081      ^4091      

TTTATATCGT GTTTATAATT GGCTAAATGC AGTTCGTCCT TGCGATAAAA AGATAGAAAT TTTCCACCCT GAAGATGGTT TTGAGTATCC CGAAGAATCA 
^4101      ^4111      ^4121      ^4131      ^4141      ^4151      ^4161      ^4171      ^4181      ^4191      

TATATTCAAC GTGACTGTTA TGAATATAAT GCACCGACTC GTACTGGGGA TTGTGGATCT ATTATTGGAT TGTATAATAA ATATTTAGAA AGGAAAATCA 
^4201      ^4211      ^4221      ^4231      ^4241      ^4251      ^4261      ^4271      ^4281      ^4291      

TCGGTATGCA CATTGCTGGA AATGATGCAG AAGAGCATGG TTATGCGTGC CCTTTGACAC AAGAGTGTCT TGAGACTGCT TTTTCTGCTT TAGTAAATAA 
^4301      ^4311      ^4321      ^4331      ^4341      ^4351      ^4361      ^4371      ^4381      ^4391      

AAATAAGAAG AATATTTCCT CACAATTTTA TTATGAAATA CCCAATATGG TTGATCCACT CGGTGATAGT AGTGTTCCTG AAGGTAAGTT TTACGCTTTA 
^4401      ^4411      ^4421      ^4431      ^4441      ^4451      ^4461      ^4471      ^4481      ^4491      

GGAAAGTCAT CTATTCGTGT GGGACAGGCA GTTAATTCGT CCATAATTCC TTCTCGAATT TATGGGAAGT TGTCTGTTCC TACAATGAAA CCAGCACTAC 
^4501      ^4511      ^4521      ^4531      ^4541      ^4551      ^4561      ^4571      ^4581      ^4591      

TCAAGCCAAC GATTCTGAAT AACAAAGTAC ATAATCCTTT ATTGTCGGGA CTTAAGAAAT GTGGTGTAGA CACTGCGGTC TTGAGTGATG ATGAAGTTTT 
^4601      ^4611      ^4621      ^4631      ^4641      ^4651      ^4661      ^4671      ^4681      ^4691      

GAGTGCTTCA CAAGATGTTT GTCGTGTTAT GTTGAACCAA TATAATAAAA ATTTGAATAA AACAAAGTAT CAACGCATTT TAACATATGA GGAAGCTATT 
^4701      ^4711      ^4721      ^4731      ^4741      ^4751      ^4761      ^4771      ^4781      ^4791      

CGTGGAACCC AAGATGATGA ATTTATGTGT GCTATTAATC GTACAACGTC ACCAGGATTT CCTTATGCAC AAATGAAAAG AAATGCTCCA GGTAAACAGC 
^4801      ^4811      ^4821      ^4831      ^4841      ^4851      ^4861      ^4871      ^4881      ^4891      

AATGGATGGG TTTTGGTGAA GAATTTGATT TTACAAGTAA TTATGCACTA GCTTTGCGGA AAGATGTTGA ACAACTCATT GAAGATTGTG CTAGCGGAAA 
^4901      ^4911      ^4921      ^4931      ^4941      ^4951      ^4961      ^4971      ^4981      ^4991      

AATATCTAAT GTCATTTTTG TAGATACATT GAAAGATGAG CGACGCGATA TAGCTAAAGT AAATGTAGGT AAAACGCGTG TATTTTCTGC AGGTCCTCAA 
^5001      ^5011      ^5021      ^5031      ^5041      ^5051      ^5061      ^5071      ^5081      ^5091      

CATTTTGTAG TTGCATTTCG CCAATATTTC CTACCTTTTG CTGCTTGGTT GATGCATAAT CGCATTTCGA ACGAAGTAGC AGTTGGCACT AATGTTTATT 
^5101      ^5111      ^5121      ^5131      ^5141      ^5151      ^5161      ^5171      ^5181      ^5191      

CATCTGATTG GGAACGTATT GCAAAACGTC TTAAAACAAA AGGTAGTCAC GTCATTGCGG GGGACTTTGG AAATTTCGAT GGATCTTTAG TAGCACAAAT 
^5201      ^5211      ^5221      ^5231      ^5241      ^5251      ^5261      ^5271      ^5281      ^5291      

TTTGTGGGCC ATATTTTGGG AAATTTTTGT TGTATGGCTT AAGCAATTTA TTGATATAGA GAATTCAGAA GGAAAACGTA TTTTATGTAT CTGTCTTGGT 
^5301      ^5311      ^5321      ^5331      ^5341      ^5351      ^5361      ^5371      ^5381      ^5391      

TTGTGGTCAC ATTTAGTTCA CTCTGTTCAT ATTTATGAAG ATAATGTATA TATGTGGACT CATTCTCAAC CTTCTGGCAA TCCTTTCACT GTTATTATTA 
^5401      ^5411      ^5421      ^5431      ^5441      ^5451      ^5461      ^5471      ^5481      ^5491      

ATTGCTTGTA TAATTCGATT ATTATGCGAC TGTCATGGAT TCGTGTGATG GAGAAATTTC AACCTAGACT TAAGTCCATG AAGTGGTTCA ACGAATATGT 
^5501      ^5511      ^5521      ^5531      ^5541      ^5551      ^5561      ^5571      ^5581      ^5591      

CGCCTTGATA ACATATGGTG ACGACAATGT TTTAAACATT GATGCAAAGG TTGTGGAATG GTTTAATCAG ATTAACATTA GTGAGGTTAT GACTGAAATG 
^5601      ^5611      ^5621      ^5631      ^5641      ^5651      ^5661      ^5671      ^5681      ^5691      

CGACATGAAT ATACGGACGA AGCTAAAACT GGTGATATTG TTAAATCTCG TAAATTAGAA GATATTTTCT TTTTGAAGAG AAAATTTCGT TTTAGCCCAG 
^5701      ^5711      ^5721      ^5731      ^5741      ^5751      ^5761      ^5771      ^5781      ^5791      

AATTACAACG CCATGTTGCT CCATTGAAGA TCGAAGTTAT TTATGAAATG TTGAATTGGT CTCGCCGCTC TATAGATCCA GATGAAATCT TGATGTCGAA 
^5801      ^5811      ^5821      ^5831      ^5841      ^5851      ^5861      ^5871      ^5881      ^5891      

CATTGAAACG GCTTTTCGTG AAGTAGTTTA CCACGGAAAA GAAGAATACG ATAAACTAAG GTCAGCGGTA TTGGCGTTGA AGGTACCCCA GGAACTTCCT 
^5901      ^5911      ^5921      ^5931      ^5941      ^5951      ^5961      ^5971      ^5981      ^5991      

GAAAACCCTC AGATTTTGAC GTACAACCAA TATTTGCACG ATATTGAATA TCTTGCGGAC CCTTTGTACG ACTTTTAGTT AAGATGTGAT CTTGCTTCCT 
^6001      ^6011      ^6021      ^6031      ^6041      ^6051      ^6061      ^6071      ^6081      ^6091      

TATACAATTT TGAGAGGTTA ATAAGAAGGA AGTAGTGCTA TCTTAATAAT TAGGTTAACT ATTTAGTTTT ACTGTTCAGG ATGCCTATTG GCAGCCCCAT 
^6101      ^6111      ^6121      ^6131      ^6141      ^6151      ^6161      ^6171      ^6181      ^6191      

AATATCCAGG ACACCCTCTC TGCTTCTTAT ATGATTAGGT TGTCATTTAG AATAAGAAAA TAACCTGCTA ACTTTCAAAC AAATAATAAT AACATTGAAA 
^6201      ^6211      ^6221      ^6231      ^6241      ^6251      ^6261      ^6271      ^6281      ^6291      

ATGAAGATCG GAAAATTACT TCCGAGCAAA AAGAGATTGT ACACTTTTCT AGTGAAGGAG TTACCCCTAG TACCACTGCG GTGCCTGATA TCGTTAGTCT 
^6301      ^6311      ^6321      ^6331      ^6341      ^6351      ^6361      ^6371      ^6381      ^6391      

TTCAACAGAT TATTTGTCTA TGACTACTCG TGAAGATCGT ATCCACACGA TTAAAGATTT TCTTTCTCGT CCAATTATAA TTCAAACTGG TCTTTGGTCT 
^6401      ^6411      ^6421      ^6431      ^6441      ^6451      ^6461      ^6471      ^6481      ^6491      

TCCGCTACAA CTGCCGAAAC TCAATTGTAT ACTGCTAATT TCCCTGAAGT GTTCATTTCT AATACTATGT ATCAAGAAAA GTTGCGTGGG TTCGTGGGTT 
^6501      ^6511      ^6521      ^6531      ^6541      ^6551      ^6561      ^6571      ^6581      ^6591      

TGCGAGCAAC TTTAGTCATT AAAGTGCAAG TGAATTCCCA ACCTTTCCAG CAAGGACGAT TGATGCTACA GTATTATCCG TATGCACAGT ATATGCCTAA 
^6601      ^6611      ^6621      ^6631      ^6641      ^6651      ^6661      ^6671      ^6681      ^6691      

CCGTGTTTCT TTGGTGAATT CCACTCTCCA AGGACGCTCT GGTTGTCCTC GAACAGATTT GGATTTGAGC GTTGGTACGG AAGTTGAAAT GCGAATTCCT 
^6701      ^6711      ^6721      ^6731      ^6741      ^6751      ^6761      ^6771      ^6781      ^6791      

TATGTGTCCC CTCATGTATA TTACAATCTT ATTACTGGAC AAGGATCATT TGGCGCTATA TATTTGGTTG TATATAGCCA ACTAAGAGAT CAAGTTACAG 
^6801      ^6811      ^6821      ^6831      ^6841      ^6851      ^6861      ^6871      ^6881      ^6891      

GAACAGGTTC TGTTGAATAT ACTGTTTGGG CTCATTTGGA AGATGTAGAT GTGCAATACC CGACCGGTGC AAACATTTTC ACGGGTAGCT CTCCAAATTT 
^6901      ^6911      ^6921      ^6931      ^6941      ^6951      ^6961      ^6971      ^6981      ^6991      

TGCCTCTTTG GGTCAGAAAA TGAGTGATGG AAAATTCACT GAAAAAGACT TGAGAGATAT TTGGACTTCA AAAGCGTACA ATAAACAACC AGACAAAATT 
^7001      ^7011      ^7021      ^7031      ^7041      ^7051      ^7061      ^7071      ^7081      ^7091      

TTCGCACAAG TGGCTTCTGA AATAACACAA CTCAAAGAAT CAGGAACAAT TAGTTCTGGA ATTGGACAAG TTTCTGAAGG TCTTTCTACC ATGTCTAAAA 
^7101      ^7111      ^7121      ^7131      ^7141      ^7151      ^7161      ^7171      ^7181      ^7191      

TCCCTATACT CGGAAATATG TTTACAAAAC CCGCCTGGAT TTCAGCTCAA GTATCTAATA TCTTCAAGAT GCTTGGTTTT TCAAAACCCA CTGTTCAAGG 
^7201      ^7211      ^7221      ^7231      ^7241      ^7251      ^7261      ^7271      ^7281      ^7291      

TCTTCCTTGT GAATCGAAAC TGCGTGGTCA AGTTCGAATG GCGAATTTTG ATGGCGCTGA TACATCACAT AAATTGGCTT TGTCTGCCCA AAACGAAATT 
^7301      ^7311      ^7321      ^7331      ^7341      ^7351      ^7361      ^7371      ^7381      ^7391      

GAAACAAAAT CTGGACTTTC TGGAACTTCT CCTGATGAAA TGGATTTATC ACACGTCCTT TCCATACCAA ATTTTTGGGA TCGTTTTACT TGGAACACAA 
^7401      ^7411      ^7421      ^7431      ^7441      ^7451      ^7461      ^7471      ^7481      ^7491      

CCGATGCCAC TAGTTCTATT TTATGGGATA ATTATGTTAC ACCAATGAAA ATTAAACCAT ATTCCTCTAC AATATTAGAT AGATTTAGAT GCACTCATAT 
^7501      ^7511      ^7521      ^7531      ^7541      ^7551      ^7561      ^7571      ^7581      ^7591      

GGGTTTTGTA GCCAACACAC ACGGTTATTG GTGTGGATCA ATAGTTTATA CTTTTAAATT TGTTAAGACT CAATTTCATT CTGGACGTTT ACGCATTAGT 
^7601      ^7611      ^7621      ^7631      ^7641      ^7651      ^7661      ^7671      ^7681      ^7691      

TTTATTCCAT TTTATTATAA TACGACTATA TCTGCAGGAG TTCCCGATGT TTCTCGTACC CAAAAAGTAA TCGTTGATCT GCGCACCTCT ACAGAAGTCT 
^7701      ^7711      ^7721      ^7731      ^7741      ^7751      ^7761      ^7771      ^7781      ^7791      

CTTTCACTAT TCCGTATGTG TCTTCACGAC CTTGGATGTA CTGTATTCGT CCTGAAGCTT CGTGGCTTGG AACCGATAAT GCTTTGATGT ACAACGCCGT 
^7801      ^7811      ^7821      ^7831      ^7841      ^7851      ^7861      ^7871      ^7881      ^7891      

TACGGGTATA GTGAGAGTTG AGGTTCTTAA CCAGTTGGTT GCCGCTAACA ACGTGTTTCA ATCTATAGAC ACTATTGTTG AAGTTAGTGG TGGTCCTGAT 
^7901      ^7911      ^7921      ^7931      ^7941      ^7951      ^7961      ^7971      ^7981      ^7991      

TTAACTTTTG CAGCACCAAT GGCTCCCTCT TATGTTCCTT ATTCTGGAGG TTTTACTTTA GCAGATGATG CGGCAGCAAA GAAACAGCGT GAGGAGGAGT 
^8001      ^8011      ^8021      ^8031      ^8041      ^8051      ^8061      ^8071      ^8081      ^8091      

ATGACAACAA CATACCTCAA ACTATTTCTA ATCGTGGAAA ACGTGAGGTT GAAGATGCTC GTATTGTTGC GCAAGTAATG GGTGAAGATT TAGCTATTCA 
^8101      ^8111      ^8121      ^8131      ^8141      ^8151      ^8161      ^8171      ^8181      ^8191      

AAGAAACGAT GCTCAACATG GTGTTCATCC AATGACTATA GACACTCATA AGATCGACTC AAATTGGTCT CCGGAAGCGC ATTGTATTGG TGAAAAGATT 
^8201      ^8211      ^8221      ^8231      ^8241      ^8251      ^8261      ^8271      ^8281      ^8291      

ATGTCTATTC GCCAATTGAT TAAGCGTTTT GGCATGGCTT TGAACTCCTT GAATTTGATA AGTGATGCAC CAAACACCTT GATAGCACCA TTTTCAGTTC 
^8301      ^8311      ^8321      ^8331      ^8341      ^8351      ^8361      ^8371      ^8381      ^8391      

AGCACCCAAC TCCTGTTGTT GCCCCTGCTG AACCCATGTC CCTTTTTGAA TATTATTATT TCATTTATGG ATTTTGGAGA GGTGGCATGA GATTTAAACT 
^8401      ^8411      ^8421      ^8431      ^8441      ^8451      ^8461      ^8471      ^8481      ^8491      

TCAGGCAGTA CGTACAAACT CAGCAGAAAC ATCAGTTAAA ACCGACACAA CTTGGACTGT AAATTTGTGG AATTCTGTAC AAGATTCTTT TAATTCTCTA 
^8501      ^8511      ^8521      ^8531      ^8541      ^8551      ^8561      ^8571      ^8581      ^8591      

ATTAATGTAT TTAGTACTAC TGATTACCCT ATAAAATCCA CAGGAGCACT TCCAGCCGGA ACAAGCGGTT TTGGCAATTC GATGACGTAT ATAGATCCTG 
^8601      ^8611      ^8621      ^8631      ^8641      ^8651      ^8661      ^8671      ^8681      ^8691      

AGGTTGAAGG TTTTATGGAA TTTGAGATTC CATATTATAA TATCTCCCAT ATTTCTCCAG CTACAACCTA TGTTCGTGGT ACTGAATCTC CTATTACAAT 
^8701      ^8711      ^8721      ^8731      ^8741      ^8751      ^8761      ^8771      ^8781      ^8791      

TAATAGTGTC TTGCGTGGAC ATTTGCCACC ACAAATTGTG GCTGTTGCAC CACAGGGCAC TATTGCCACT ACAGATGTAG TGAACGCTCA ATTTGCTCGT 
^8801      ^8811      ^8821      ^8831      ^8841      ^8851      ^8861      ^8871      ^8881      ^8891      

GCTCCTTCTG ACGACTTTTC ATTTATGTAT CTCGTTGGTG TTCCACCACT TACCAACGTC GCTCGTCCCT AACTCCCTTA CTATTCTGGA TCCTTTAAAA 
^8901      ^8911      ^8921      ^8931      ^8941      ^8951      ^8961      ^8971      ^8981      ^8991      

TTTATTAGGA TAGACAAAAA TTAACTCTAT ATTAGATAGT ATTAGATTAA GTTTCTTTTT GGTTTTGGGT TTTATTCAGT AACTATCTGC CCTGCTTACA 
^9001      ^9011      ^9021      ^9031      ^9041      ^9051      ^9061      ^9071      ^9081      ^9091      

CGGGTATTAT TTTTAATTCT TGTCCCTTCT GGACTCTTTT ATTTTGTATT TTCAAAATTT TTACTAATTT TTAGTCAGAG TCCTTAGGGG CTACCAGGTT 
^9101      ^9111      ^9121      ^9131      ^9141      ^9151      ^9161      ^9171      ^9181      ^9191      

TTTCGCAATT TTCCTGCTTA CTGACAGTAA TTGCAATTTC GAATTAAAAT AATAGTTGTT TTCT
^9201      ^9211      ^9221      ^9231      ^9241      ^9251      ^9261

Credibility of mRNA sequence:

unknown

The organism containing this mRNA with IRES segment in its genome:

Drosophila C virus EB

A promoter reported in cDNA corresponding to IRES sequence:
not tested The total number of notable open-reading frames (ORFs):
2

Notable Open-Reading Frames (ORFs; protein coding regions) in the mRNA/+RNA sequence:

ORF

ORF position:

1

Version: `0`
Originaly submitted by: Martin Mokrejš	Reviewed by: Martin Mokrejš

The abbreviated name of this ORF/gene:
NS

The description of the protein encoded in this ORF:
non-structural polyprotein

The translational frameshift (ribosome slippage) involved:
0 The ribosome read-through involved:
no

The alternative forms of this protein occur by the alternative initiation of translation:

not tested

The ORF absolute position (the base range includes START and STOP codons or their equivalents):

799-6078

ORF

ORF position:

2

Version: `0`
Originaly submitted by: Martin Mokrejš	Reviewed by: Martin Mokrejš

The abbreviated name of this ORF/gene:
CP

The description of the protein encoded in this ORF:
capsid protein

The translational frameshift (ribosome slippage) involved:
0 The ribosome read-through involved:
no

The alternative forms of this protein occur by the alternative initiation of translation:

not tested

The ORF absolute position (the base range includes START and STOP codons or their equivalents):

6267-8972

Citations:

Johnson KN, Christian PD (1998) The novel genome organization of the insect picorna-like virus Drosophila C virus suggests this virus belongs to a previously undescribed virus family. J. Gen. Virol. 79(1):191-203

IRESs:

IRES:

Version: `2`	Last change: `2009-08-31 00:56:27`
Originaly submitted by: Martin Mokrejš	Reviewed by: Martin Mokrejš
The IRES name: `DCV_IGR`

The IRES absolute position (the range includes START and STOP codons or their equivalents):

6078-6266

Conclusion:
putative_IRES

How IRES boundaries were determined:
guessed

The sequence of IRES region aligned to its secondary structure (if available):

GTTAAGATGT GATCTTGCTT CCTTATACAA TTTTGAGAGG TTAATAAGAA GGAAGTAGTG CTATCTTAAT AATTAGGTTA ACTATTTAGT TTTACTGTTC 
^6078      ^6088      ^6098      ^6108      ^6118      ^6128      ^6138      ^6148      ^6158      ^6168      

AGGATGCCTA TTGGCAGCCC CATAATATCC AGGACACCCT CTCTGCTTCT TATATGATTA GGTTGTCATT TAGAATAAGA AAATAACCT
^6178      ^6188      ^6198      ^6208      ^6218      ^6228      ^6238      ^6248      ^6258

Remarks:

Cherry et al. (2005) studied as 5NTR IRES region 1–796 and as IGR IRES region 6080–6282 of the genome.
The annotated IRES region was taken over from Nakashima and Uchiumi (2009) from Table 1.

Citations:

Nakashima N, Uchiumi T (2009) Functional analysis of structural motifs in dicistroviruses. Virus Res. 2(139):137-147

Cherry S, Doukas T, Armknecht S, Whelan S, Wang H, Sarnow P, Perrimon N (2005) Genome-wide RNAi screen reveals a specific sensitivity of IRES-containing RNA viruses to host translation inhibition. Genes Dev. 19(4):445-452

Last change to the database: 2019-03-18 09:32:49 GMT+1