IRESite_Id:624 summary record describing characteristics of KBV

IRESite: The database of experimentally verified IRES structures

The nucleic acid data:

IRESite Id: `624`	Version: `0`
Originaly submitted by: Martin Mokrejš	Submission date: `2009-08-29 20:45:03`
Reviewed by: Martin Mokrejš

IRESite record type:

natural_transcript

The shape of the nucleic acid molecule translated: `linear`	The quality of the mRNA/+RNA sequence: `end-to-end_full-length_mRNA`
The abbreviated name of the virus/gene coding for this mRNA/+RNA molecule: `KBV`	The genetic origin of this natural mRNA/+RNA: `viral`

The GenBankId GI:# number of exactly this mRNA/+RNA sequence:
30526317

The mRNA/+RNA description:

Kashmir bee virus, complete genome.

The mRNA/+RNA sequence represented in the +DNA notation:

TACGTACAAT TTTGACGCTT CGTTCATGCA ACAATGAACT CACATGTGGC GCTCGGTAGT AACCAGAGGG GCGTCATTCC CCCGTATGGA GTGGAGAATA 
^1         ^11        ^21        ^31        ^41        ^51        ^61        ^71        ^81        ^91        

TAAGCTACCG ACTCGAGCTG TAGAATAATT CAGCAACTTA TAACGAACAC GAATTTTAGT CGACGAAACC ATTTTAGCCT TTAATTCTAT GATTTGATTA 
^101       ^111       ^121       ^131       ^141       ^151       ^161       ^171       ^181       ^191       

TAATGATAAA CAGCTCATGT AACTGTCTAA ACTACATAAA TACAACTGGA TTACGAACCT TTAAGTAACT ATCTTAGATG AAGTCTAGTA GTCTCCCAAT 
^201       ^211       ^221       ^231       ^241       ^251       ^261       ^271       ^281       ^291       

ATTTCCGTGA AAAGAATGAG GGACGAGATA GCTCTATTTA AAGACGTGAG GCTTTAAATT CTGATAAATA CATTACCTGA GAATTCCTCC TTTAGGAGTT 
^301       ^311       ^321       ^331       ^341       ^351       ^361       ^371       ^381       ^391       

AGAATTTGAA AAGATTAGTA CCTATACTTA ATAGAATTTA AATATGTTAA TAATGCTGAA GACAAGTATT TCGATTATTA ACCTCTATAT TTCTATATAA 
^401       ^411       ^421       ^431       ^441       ^451       ^461       ^471       ^481       ^491       

AGTATCTGTG AGTCTCAGTG GACATCACAG TAAGGTCGCA GTTAACTTGT AATCTTTTCA TTCCTGTGTC GGAGCAGTGG TAATGGAGCC GGACGATTTC 
^501       ^511       ^521       ^531       ^541       ^551       ^561       ^571       ^581       ^591       

GCCAAAACAT GTTTTCTTCA ACTCAACAAA ATAACAAGAT GACAAAACAA CCAGCAACTT TAACCTATCT TTCAAGTATG AAGGTGATTA GTATGCCACC 
^601       ^611       ^621       ^631       ^641       ^651       ^661       ^671       ^681       ^691       

AAGTGAATTC TTTTCACTTG ATGACTTGTG TCGCCAACAA ATTTTAAAGA TGGTTTATAT TGACCAATAC GCTTTTCACA TGTTACATGA AGACATAAAT 
^701       ^711       ^721       ^731       ^741       ^751       ^761       ^771       ^781       ^791       

TGTATAGGGT TTACTCTATC AATTTATGAT GAAGATAAAC GAATGAAGGA CATAACTTAT TGGGATCTGA ATTGTGAATA TCATGAAAAT TTATATGATG 
^801       ^811       ^821       ^831       ^841       ^851       ^861       ^871       ^881       ^891       

CACTAATGTC GGCCGAATTT GAACAAGTTT GGTTTACATT ATTGCTTAAA TATCTTGATT TTGTACCAGT ACCAATGAAT TGGAGAGGAA TGCCAGAATT 
^901       ^911       ^921       ^931       ^941       ^951       ^961       ^971       ^981       ^991       

TCCTACCATT TATGTATCAA AACATTTTTG GTATGAATTA TATCGCATTG GATTTTTGAA TAAGTTATAT AAATGTGGAA CTTGGGAGTC AGTATTAAAT 
^1001      ^1011      ^1021      ^1031      ^1041      ^1051      ^1061      ^1071      ^1081      ^1091      

CTCTTAGCCG GAGATATAGA ATTGAATCCT GGACCCACTG ATATTTCTTA CAAAGAACAA TGCCAACGAC GACAACGACG CAAACGAATT TCTAAATCTT 
^1101      ^1111      ^1121      ^1131      ^1141      ^1151      ^1161      ^1171      ^1181      ^1191      

ATGAAGAAAT CAAAATGCAA CAACATATTG ATAAAGTAAT AAGAGAAGAA TTTCGTTCCC ACCAGACAAA ACCCAAGAAA TTGAAAGATG TTATTGATGT 
^1201      ^1211      ^1221      ^1231      ^1241      ^1251      ^1261      ^1271      ^1281      ^1291      

TTCTATGCAG GGACTTTTTA ATTTTCAAGA AGAAAAGGAT ATTATTAAGT CAACTGCATA TAAATTCAAT GATACTCTGG ATAAATCTAA TCATATAATG 
^1301      ^1311      ^1321      ^1331      ^1341      ^1351      ^1361      ^1371      ^1381      ^1391      

GATAATCTTA TACCACAATT AGAAGAAACG TTAGCAGGCT TTAGAAGGAC TTATGCGAAG TGTGAACAAA AGTTATTTGG AACTATTAGC ATTATTGATG 
^1401      ^1411      ^1421      ^1431      ^1441      ^1451      ^1461      ^1471      ^1481      ^1491      

TCTGTATTGA TATCATTAGT GCTTTGTTAC AAGTAAGTTT TGCGAAAGCT TCAATGAAGT TAGCTTCTTT AGCAGTAGAA GTATTTAGAT TAATTAAGAA 
^1501      ^1511      ^1521      ^1531      ^1541      ^1551      ^1561      ^1571      ^1581      ^1591      

GTATGTAGGC AGTGTTAAGA TTAATATTGA TAAAATAAAG GAGTTGTTAA CATTTGGTAA GCAAGCATTA GACGTGGATA ATCCCATTAT TCAAGTTAAA 
^1601      ^1611      ^1621      ^1631      ^1641      ^1651      ^1661      ^1671      ^1681      ^1691      

ATGCAAATTG ATATGCCAGA TTACACAACT CTTTTACAAC CCAATGTTAT TGTTAGTGCT ATATTTTTAG TATTAAGTGT TATTTTCACC AGAACTCTTC 
^1701      ^1711      ^1721      ^1731      ^1741      ^1751      ^1761      ^1771      ^1781      ^1791      

CCACAAAAAC TGGAATGGAA GCAATGATAA AAAGGATTGG AGATCTAGGA CGTGCTGCGA AAGGCGTTTC TGATCTTAAT TCTGTTTTGA ATAATTCCAT 
^1801      ^1811      ^1821      ^1831      ^1841      ^1851      ^1861      ^1871      ^1881      ^1891      

TTCAACTATG TTGGAACATT TTGGCGTTCA TACTTTAGGT TTAAAACAAG AGGCAGAGCT TCAACTTTTA GTACAAGGCT ATAAGGCCTG GTGCGATGAA 
^1901      ^1911      ^1921      ^1931      ^1941      ^1951      ^1961      ^1971      ^1981      ^1991      

GTGAGAGCTC TAGTAGGACA TAAGATTAAA TTAGACGGAG ATTTTGATGG AAAAAGTATT GTTGAAGAAA TAATGAAAGA TGTCCACGAA ATTCAGCGTG 
^2001      ^2011      ^2021      ^2031      ^2041      ^2051      ^2061      ^2071      ^2081      ^2091      

TAGAGAACCT CTACAAGCAA GGATTGGACA TTGCTCGTAA TATTTCTGAT ATGAAACTCC CATCAAAATT GACAATTAGT TTTAATACCC ACATGAGATA 
^2101      ^2111      ^2121      ^2131      ^2141      ^2151      ^2161      ^2171      ^2181      ^2191      

TTTGACTGAA GTTTTCAAAG CAGTAGACAC CTCTGGCGCC TTTGGAAACA AACCACGGAC TCAACCTGTA GTCATTTGGC TATATGGTGA GAGTGGACGT 
^2201      ^2211      ^2221      ^2231      ^2241      ^2251      ^2261      ^2271      ^2281      ^2291      

GGTAAGTCAG GTATGACATG GCCCTTAGCA GTAGATTTAA ATAATAGTTT ATTAGATGAT GTGACGGAGA TGCGTAACTT TTCCAAGAAT ATCTACATGA 
^2301      ^2311      ^2321      ^2331      ^2341      ^2351      ^2361      ^2371      ^2381      ^2391      

GAAATGTAGA ACAGGAATTT TGGGATAATT ATCAAGGACA AAATATCGTA GTTTACGATG ATTTTGGACA AATGAGAGAT TCAACAGCTA ACCCAAACCC 
^2401      ^2411      ^2421      ^2431      ^2441      ^2451      ^2461      ^2471      ^2481      ^2491      

AGAATTCATG GAATTGATAC GTACTGCCAA TATCGCCCCC TATCCTCTAC ACATGGCCCA TTTGGAAGAT AAGAGAAAGA CGAAGTTTAC GTCGAAAGTG 
^2501      ^2511      ^2521      ^2531      ^2541      ^2551      ^2561      ^2571      ^2581      ^2591      

ATAATCATGA CATCCAATGT TTTTGAACAA TCTGTAAATT CGCTTACTTT TCCTGATGCT TTCAGACGCA GAGTAGATCT GTGTGCTGAA GTGCGCAATA 
^2601      ^2611      ^2621      ^2631      ^2641      ^2651      ^2661      ^2671      ^2681      ^2691      

AGGAAGAATA TACGAAGGAA GGTTATTCTA AGCAGAAGGG ATGCATGGTT AAGCGATTAG ATCGTGAAAA GGTGCAGAAG TTGACAGGAG ATATTCACTC 
^2701      ^2711      ^2721      ^2731      ^2741      ^2751      ^2761      ^2771      ^2781      ^2791      

AACGAAACCA TATTTGGTTG ACTTAGTGAA TGCAGAGACC GGAGAAAAAT ATAAGACTGA CATTGAATAT GAAGACTTTT TAGATATGTG CTTGGAGAAA 
^2801      ^2811      ^2821      ^2831      ^2841      ^2851      ^2861      ^2871      ^2881      ^2891      

ACCAAGACGT GTCGAGATGA GTCTGCCAAA CTCAATGAAT TTCTTATGAA TTATGCTGAA CAACGCAAAG ACAGAAGTAG AGATACTTTT ATCCATCCTG 
^2901      ^2911      ^2921      ^2931      ^2941      ^2951      ^2961      ^2971      ^2981      ^2991      

AACCTGAATA TGACGATGAT GAGTTCAAGG ACACATTAGA AGTACAGATG CAAATTGATG CTCCTAATGA TGACCTTGTT CTCATTGAAC AAGATAGATT 
^3001      ^3011      ^3021      ^3031      ^3041      ^3051      ^3061      ^3071      ^3081      ^3091      

GCGAGAGATG ATTGATTCAT GTACCGGTGT TGTTTATGAT TGCAAACAAC AAGTAGTGAA GATATCAAAA CTCGCTTTTG ATCTTGCCCC ATTAGACTAT 
^3101      ^3111      ^3121      ^3131      ^3141      ^3151      ^3161      ^3171      ^3181      ^3191      

GATGAACAAA TGCAACGAAT TAAGGAAATG AAGTATTACC AGAAAGTCGC AAGTGGCGTA TCATATTTGA AGAAAGTTTT GGATGCAGGT CTTGCAATTT 
^3201      ^3211      ^3221      ^3231      ^3241      ^3251      ^3261      ^3271      ^3281      ^3291      

GCAAGACTTG GATTGAAGAA ACTGTCAAAT ATGTGCAGGA ACACCCTTGG ACCACAGCAA TGGCCATTTT AGGAACCCTA TTAGGTATTC TTACCGTAGT 
^3301      ^3311      ^3321      ^3331      ^3341      ^3351      ^3361      ^3371      ^3381      ^3391      

AGGATTTTGG AAATGGCTTT GCAGTGGAGA AAAGAAGAAA CCACAAGCTA CAAAACGACA TTTTGTCAAT ACTGGTGTGA CTCTTGTCAT ACCACATCGA 
^3401      ^3411      ^3421      ^3431      ^3441      ^3451      ^3461      ^3471      ^3481      ^3491      

GACCTCAATA AGTTTTGGCA GTTGGATGAA ACATTAGACG TATCCAACAT GCGTGTTGGA GATGTTGAAG ATCATCTGGC GGCCTTACTT AAACCCAGAC 
^3501      ^3511      ^3521      ^3531      ^3541      ^3551      ^3561      ^3571      ^3581      ^3591      

ATCGTGTTGT CATTGTACCT AGGGTGACTA AATTCATTTT GAGTATTATT GATAACCACT CGAAACTCTT TGATAAAACG ATTTTAATTA CCAAGAACCG 
^3601      ^3611      ^3621      ^3631      ^3641      ^3651      ^3661      ^3671      ^3681      ^3691      

ATTCTTTACT TATGAAAATA AATATATTGA ATTGGTGTGT GGTGAGATGA ATCGTTTCTT TGAAGAAGAC CCGGAATCAC TTGTAAATAC ACCAAAAGTA 
^3701      ^3711      ^3721      ^3731      ^3741      ^3751      ^3761      ^3771      ^3781      ^3791      

GAAGCTTTTG CTTCTGCTGA TTTGGCTACT TATAAAAACA GGACTCCGAT AGTTATTGAG GCACAAACAT CAGGAGATAA TATGACTCTT AAACAACCAC 
^3801      ^3811      ^3821      ^3831      ^3841      ^3851      ^3861      ^3871      ^3881      ^3891      

GACCAGTTGT TATAGAAGCT CAGACATCTG CTGATTGTGT TACTTTAGCT AAAAACACAC AACGAATGAT TGAAGCATTT GCAAGTTCTG ATACTGTAAC 
^3901      ^3911      ^3921      ^3931      ^3941      ^3951      ^3961      ^3971      ^3981      ^3991      

ACTGAAAAGA CCAACAACAA AATATGTTGA AGGAACTGGA TATGATACAG TTGATGTCTC TATGCAAATG TGGAGAGATC AGGTGGCGCA GAAATTGATC 
^4001      ^4011      ^4021      ^4031      ^4041      ^4051      ^4061      ^4071      ^4081      ^4091      

ACTAACCGAA TTTTAACAAA TCTGTATAAA ATTTGTTTAG TAAATGACGA CGACACAGTA ACACCACTTT TGAACGGATT ATTTATTCGT TCAAATGTGA 
^4101      ^4111      ^4121      ^4131      ^4141      ^4151      ^4161      ^4171      ^4181      ^4191      

TGTTAGTACC CGGACATTTG ACTGGATTCA TTGCAGAGCA TGATACAATT GAAATCAGAA ATCTTTTTGA TGTGGTATTT AGAGTACCAT GGAAAGAAGT 
^4201      ^4211      ^4221      ^4231      ^4241      ^4251      ^4261      ^4271      ^4281      ^4291      

TAAGAAGATA ACAGTTGAGA ATGCTCTTGG TGAATCCAAG GAAGCAGCGT TATTAGCGTT CCCTAAGTTC GTATGTCAAC ACTCTGACAT TGTAAAGCAC 
^4301      ^4311      ^4321      ^4331      ^4341      ^4351      ^4361      ^4371      ^4381      ^4391      

TTTCAAACTG CTGAATCAAT GTCAAAGTTT AAGCGATGTG AGGTCACATT ACCTGTATTG CGTTACTCTC AAAAATTGGA AAGATTTATG TCTTCCCTTA 
^4401      ^4411      ^4421      ^4431      ^4441      ^4451      ^4461      ^4471      ^4481      ^4491      

TTGAATGTGA TAAAGTAGAG GCATGTGATA AAACTTATAC GCTAAATGAT GTTAAGAAAG GACAATATAT ATTGCGACAA GGATTAGAAT ATACGATGCC 
^4501      ^4511      ^4521      ^4531      ^4541      ^4551      ^4561      ^4571      ^4581      ^4591      

GACAATTGAT GGTGATTGTG GAGCCCCACT AATCATCAAT GAAACACAGG TTACTAGAAA GATAGCTGGT ATACATGTTG CTGGTGCAGC ATGTGGTCGA 
^4601      ^4611      ^4621      ^4631      ^4641      ^4651      ^4661      ^4671      ^4681      ^4691      

GCTTATGCAG AATCTATAAC CCAAAAAGAT TTGGAGCGTA CATTTAGTAA AATAGATGTT ACGATGCAAA TCCAATTGGA TTTAGATTCT TCATTAGATT 
^4701      ^4711      ^4721      ^4731      ^4741      ^4751      ^4761      ^4771      ^4781      ^4791      

TTTCTAGAAC CGAACCCAAA ATTCCTGCTG GAGTCGAATT TGGACCGGAA GCTCTCACTT TTTGTGATCT TCCAGCCCTT AAGATGATAC CAGTAGGACG 
^4801      ^4811      ^4821      ^4831      ^4841      ^4851      ^4861      ^4871      ^4881      ^4891      

ACTTCCCGAA CCCCTATTTG AACCAGGCAA AACAGATATT AGGCCTTCCT TAGTACATGG AATGATTTCT GATATTAAGA CTAAACCAGC TTACTTACGT 
^4901      ^4911      ^4921      ^4931      ^4941      ^4951      ^4961      ^4971      ^4981      ^4991      

AATGTAAGAG TAGATGGTGA AGTTATAAAT ATGAAACACA GAAATTTAAT GAAATGTGCT ATGGATACAC CTTATATCGA CAAGGACATG ATCGAGGAAG 
^5001      ^5011      ^5021      ^5031      ^5041      ^5051      ^5061      ^5071      ^5081      ^5091      

CATATCAGTT AACTAAATCC GTTTGGTTAA AAGGTATGCG AGATGAATTG AAAAAGGTTC TCACTTATGA AGAAGCCATT TGTGGCTCTG AAGTAAGTGA 
^5101      ^5111      ^5121      ^5131      ^5141      ^5151      ^5161      ^5171      ^5181      ^5191      

ATACATTTCT TCAATTAATA GGAGTAGCTC CCCAGGATAT CCTTGGATAA AGGATAGAGT GAAAGGAACT AAAGGAAAAC AAGGCTGGTT TGGTACTGAT 
^5201      ^5211      ^5221      ^5231      ^5241      ^5251      ^5261      ^5271      ^5281      ^5291      

GGAGAATTTA TTCTCAACGA AGATGTCGAA TTAGCCGTAC AACGACGACT ACAAGCAGCT CGTGAAGGAA AACGATTACC TGTGATGTGG GTCGACACAT 
^5301      ^5311      ^5321      ^5331      ^5341      ^5351      ^5361      ^5371      ^5381      ^5391      

TGAAAGATGA ACGTCGACCT ATTGAAAAAG TTAATCAATT GAAAACACGA GTATTCTCAA ATGGACCAAT GGACTTCTCA ATTGCGTTTC GAATGTATTA 
^5401      ^5411      ^5421      ^5431      ^5441      ^5451      ^5461      ^5471      ^5481      ^5491      

TTTGGGCTTT ATAGCTCATT TGATGGAAAA TCGAATTACG AATGAAGTGT CTATTGGAAC GAATGTTTAC TCACAAGACT GGAGTAAAAC TGTTAGGAAA 
^5501      ^5511      ^5521      ^5531      ^5541      ^5551      ^5561      ^5571      ^5581      ^5591      

TTAACCAAAT TTGGAAATAA AGTAATTGCT GGTGATTTTT CAACTTTTGA TGGATCACTA AACGTTTGCA TTATGGAAAA ATTTGCAGAT TTAGCTAATG 
^5601      ^5611      ^5621      ^5631      ^5641      ^5651      ^5661      ^5671      ^5681      ^5691      

AGTTTTACGA TGACGGACCG GAAAATGCTT TGATACGTCA TGTTCTATTG ATGGATGTGT ACAATTCTGT ACATGTCTGT AATGATTCAG TATACATGAT 
^5701      ^5711      ^5721      ^5731      ^5741      ^5751      ^5761      ^5771      ^5781      ^5791      

GACTCATAGC CAACCTTCAG GAAACCCCGC AACAACACCC CTTAACTGTT TCATTAATAG CATGGGATTG AGAATGTGTT TCTCAATTTG TGCTACTAAA 
^5801      ^5811      ^5821      ^5831      ^5841      ^5851      ^5861      ^5871      ^5881      ^5891      

GCAGCGGTTA AAATGACGAT GAGAGATTTT AGTAAACATG TTTCCCTCGT CTCTTATGGA GATGATAATG TAATTAACTT CAGTGATGAA GTTAGTGCAT 
^5901      ^5911      ^5921      ^5931      ^5941      ^5951      ^5961      ^5971      ^5981      ^5991      

GGTATAACAT GTCTACTATT GCAGAGGCTT TTTCAACACT TGGATTCACT TATACAGATG AGCTCAAGGG AGTTAGAGGC GAGGTACCAA ATTGGCGATC 
^6001      ^6011      ^6021      ^6031      ^6041      ^6051      ^6061      ^6071      ^6081      ^6091      

AATACAGGAC GTGCAATATC TTAAACGTAA GTTTAGATAT GACAATCAAC GGAAAGTTTG GGAAGCTCCA TTGTGTATGG ACACGATTCT TGAAATGCCT 
^6101      ^6111      ^6121      ^6131      ^6141      ^6151      ^6161      ^6171      ^6181      ^6191      

AATTGGTGTC GAGGAGGACT CGATATTCAA GAAGGTACAA AATTGAACTG TGAAAATGCA ATAATGGAAC TTTCTATGCA TGAAGAGGAA GTCTTTGATA 
^6201      ^6211      ^6221      ^6231      ^6241      ^6251      ^6261      ^6271      ^6281      ^6291      

AGTGGTCAAA AGTAATTGAC AAAGCTTATG CAAAGGCTAC AGGAGATCAC CTGGACATAA ACACTTATCG TGGATATGCT CAGGAGCGGT ATCTCGAGTA 
^6301      ^6311      ^6321      ^6331      ^6341      ^6351      ^6361      ^6371      ^6381      ^6391      

TTATATGTAA ATATAATACT TGAGATGCAC TGTTTCATGG TTACCCATCA TTTGAGGAAA TTTCCAATAA ACTTGAATGT AAGGCTTGAA ACAGTGGTCT 
^6401      ^6411      ^6421      ^6431      ^6441      ^6451      ^6461      ^6471      ^6481      ^6491      

AGGTGCCCTA TTTAGGGTGA GGAGCCTAGC TGGCAGCCCC AGTGAATCCT CTATTGGATA GAAACCGCTA TATCGGGTAG CTATAGCAGT CGGATAGTAA 
^6501      ^6511      ^6521      ^6531      ^6541      ^6551      ^6561      ^6571      ^6581      ^6591      

TATATCCGGC GTTTCGAAAT ACCATACCTG CTGATAACCA AGAAAACGAT TCTACCAATG TACATAACAC GAAACTCGCG TCGACCTCAG CGGAGAATGC 
^6601      ^6611      ^6621      ^6631      ^6641      ^6651      ^6661      ^6671      ^6681      ^6691      

CATTGAGAAG GAACAAATCA CCACCTTTCA TGATGTGGAA ACTCCAAATA GGATCGATAC CCCCATGGCT CAGGATACTT CATCGGCTAG GAGCATGGAT 
^6701      ^6711      ^6721      ^6731      ^6741      ^6751      ^6761      ^6771      ^6781      ^6791      

GATACGCACA GTATTATTCA GTTTCTACAA CGCCCCGTTC TCATTGACAA CATTGAGATT GTTGCAGGAA CAACTGCCGA TAACAACACA GCACTCAGTA 
^6801      ^6811      ^6821      ^6831      ^6841      ^6851      ^6861      ^6871      ^6881      ^6891      

GATATGTGCT AGATAGAACA AACCCGCAAA AATACATTAA ACAATGGACA TTACCATCAA CAGTGTTGAA AGCTGGTGGA AAAGCCCAAA AGCTTGCCAA 
^6901      ^6911      ^6921      ^6931      ^6941      ^6951      ^6961      ^6971      ^6981      ^6991      

CTTTAAATAT TTGCGATGTG ATGTACAAGT GAAAATTGTA TTGAATGCTA ATCCATTCAT TGCTGGTAGG TTATACCTAG CATATTCACC TTATGACGAC 
^7001      ^7011      ^7021      ^7031      ^7041      ^7051      ^7061      ^7071      ^7081      ^7091      

AAAGTAGCAC CTGAACGTAG AATTATTTAT ACTTCCCGTG CAGGTGTTAC AGGTTATCCG GGAGTCGAAC TAGATTTCCA ATTAGACAAT TCAGTTGAGA 
^7101      ^7111      ^7121      ^7131      ^7141      ^7151      ^7161      ^7171      ^7181      ^7191      

TGACTATTCC ATATGCATCT TTTCAAGAAG CATATGATTT AGTTAGTGGG AATGAAGATT TTGTGCAGTT GTACCTTTTT ACAATTGCAC CGGTTTTGGG 
^7201      ^7211      ^7221      ^7231      ^7241      ^7251      ^7261      ^7271      ^7281      ^7291      

ACCTTCAGCT GAATCAGCGA ATTCAAAAGT AGACCTTTCA GTCTATATGT GGTTAGATAA CATATCTCTC GTTATCCCCA CATATAGATT GAATCCAAAT 
^7301      ^7311      ^7321      ^7331      ^7341      ^7351      ^7361      ^7371      ^7381      ^7391      

CTTCCAACCG GACAAACTCT AACCCGCATA GTTCAGAATT CCGATTCTGA TAAACTCAAA GAAGCACTTA AGATTGCTAA GTCTAAGAAC CCTTCAGGAT 
^7401      ^7411      ^7421      ^7431      ^7441      ^7451      ^7461      ^7471      ^7481      ^7491      

ATAAATATAT CATGGGAGTT CTTGAACAAT ACAATCCAAG TGTGAAACAA GTTTCTATGC AAATCGCAAC ACCTAACAAA TCAAAATCAA CAAAACCAAC 
^7501      ^7511      ^7521      ^7531      ^7541      ^7551      ^7561      ^7571      ^7581      ^7591      

ATCCGAAAAC CCAAAAATTG GACCAATTTC CGAAGTGGCT TCAGGAGTTA AGACAGCTGC AAATGGCATC GAGCGCATTC CAGTGCTAGG TGAAATTGCA 
^7601      ^7611      ^7621      ^7631      ^7641      ^7651      ^7661      ^7671      ^7681      ^7691      

AAGCCGGTAA CTGCTGCAGT TAAATGGTTT GCTGATATTG TAGGAGGTGT AGCAGCCATA TTCGGGTGGT CCAAACCCCG AAATCAGAAT CAAGTGATGC 
^7701      ^7711      ^7721      ^7731      ^7741      ^7751      ^7761      ^7771      ^7781      ^7791      

CTTATCAGAA TGTGCCTGGA TGGGGATATT CCCTATATAA AGGCATTGAC ATGAGTGTAC CACTTGCTTA TGACCCCAAT AACGAATTAG GAGACTTGCG 
^7801      ^7811      ^7821      ^7831      ^7841      ^7851      ^7861      ^7871      ^7881      ^7891      

AGATGTATTT CCATCTGCCG TAGACGAAAT GGCTATTGGA TATGTTTGTG GCAATCCAGC TATAAAACAT GTCCTCACCT GGAGTACGAC AGATGTGGTT 
^7901      ^7911      ^7921      ^7931      ^7941      ^7951      ^7961      ^7971      ^7981      ^7991      

CAAAACCCGA TAAGTAACGG AGATGATTGG GGCGGTGTAA TACCAGTGGG AATGCCTTGC TACTCTAAGA CTATTAGAGC AGTTAAAGGC GCCACTTCGA 
^8001      ^8011      ^8021      ^8031      ^8041      ^8051      ^8061      ^8071      ^8081      ^8091      

CGTCAAAAAC CGAAGTGATG GACCCAGCAC CGTGTGAATA TGTTGCAAAT CTTTTCTCAT ATTGGCGTGC AACTATGTGC TATCGTATTA CGGTAGTAAA 
^8101      ^8111      ^8121      ^8131      ^8141      ^8151      ^8161      ^8171      ^8181      ^8191      

GACAGCTTTT CACACAGGCA GGTTGGAAAT CTTCTTTGAA CCAGGAAGTA TTCCCACGGT AAGAACCGCA GATAACTTAG GACCAGATCA GACACAATTG 
^8201      ^8211      ^8221      ^8231      ^8241      ^8251      ^8261      ^8271      ^8281      ^8291      

AACGGAACAA TAGCTCCATC CGATAACAAC TATAAGTATA TATTAGACTT AACAAATGAT ACTGAGGTTA CGATCAAAGT ACCATATGTT TCGAATAAGA 
^8301      ^8311      ^8321      ^8331      ^8341      ^8351      ^8361      ^8371      ^8381      ^8391      

TGTTTATGAA GACCGTTGGC ATCTACGGTG CGCATGATGA GGATAATTGG AACTTTGATG AATCCTTCAC CGGATTCTTG TGCATAAGGC CAATTACTAA 
^8401      ^8411      ^8421      ^8431      ^8441      ^8451      ^8461      ^8471      ^8481      ^8491      

ACTCATGGCA CCTGATACGG TATCGCAGAA AGTATCTATA GTTGTATGGA AATGGGCAGA AGACGTAGTA GTAGTAGAAC CTAAACCACT CACCTCAGGA 
^8501      ^8511      ^8521      ^8531      ^8541      ^8551      ^8561      ^8571      ^8581      ^8591      

CCGACTCAAG TGTACAATCC ACCTGCAGTA GCTAGAGACC TAGTTAAACA GATTGATGTT TCAATGCAAA TTAATTTAAG TAACAAGACT GACGAAAACA 
^8601      ^8611      ^8621      ^8631      ^8641      ^8651      ^8661      ^8671      ^8681      ^8691      

CAATCTCTTT CTTTGACTCA GGCGACCCAG AACGAATGAA TAATGAGGCT CTCATGAGGG GATGTGGCGA ACAGATAGTA AATTTAAGAC CCTTACTTCG 
^8701      ^8711      ^8721      ^8731      ^8741      ^8751      ^8761      ^8771      ^8781      ^8791      

CACATTCCGA ACAATAAATG ATAACTGGAG TTTGGCAGCA AACACCAAGA CACCGATCAC AGACCTAACA AACACCGCAG ATGCTGAAGG CCGAGACTAT 
^8801      ^8811      ^8821      ^8831      ^8841      ^8851      ^8861      ^8871      ^8881      ^8891      

ATGTCTTATC TTTCTTTTCT TTATAGATTT TATCGAGGAG GTAGACGATA TAAATTCTTT AACACGACCC CCCTAAAACA ATCACAAACC TGTTATGTGA 
^8901      ^8911      ^8921      ^8931      ^8941      ^8951      ^8961      ^8971      ^8981      ^8991      

GGAGTTTTCT AATTCCCCGT AACTACACAG CCGACGAAAT TAACACCGAC GGACCATCTC ATATTACATA CCCAGTAATT AACCCAGTAC ATGAAGTAGA 
^9001      ^9011      ^9021      ^9031      ^9041      ^9051      ^9061      ^9071      ^9081      ^9091      

AGTTCCCTTC TACTCTCAGT ACCGCAAAAT TCCTATCGCT TCAACATCAG ACAAAGGATA CGATTCATCC CTCATGTATT ACACAAATGT TGGTACCCAA 
^9101      ^9111      ^9121      ^9131      ^9141      ^9151      ^9161      ^9171      ^9181      ^9191      

CAGATTGTAG CACGTGCCGG GAATGATGAC TTCACCTTTG GTTGGATGAT AGGCACTCCG CAACTTCAAG GTATAACTAA AGAAGTCGCA AACTAGATGT 
^9201      ^9211      ^9221      ^9231      ^9241      ^9251      ^9261      ^9271      ^9281      ^9291      

GCATTAGGAG ACAGTAAAAT CTCCTTTTGT ATGGCTATTA GTCTAAATTT TTCAGAAAAT TTCAGTTTAG ACCGAAACAG AGTAGTACGA GCACTATGGT 
^9301      ^9311      ^9321      ^9331      ^9341      ^9351      ^9361      ^9371      ^9381      ^9391      

TCGAAAAGAC GCTTAAAAGA AATCTCACTA GAAGGAGGCT TTTAAGCTAT CAGCTTTTTG ACATAATCTA ACGACTACGG CAAAATTTCG GAATTAGGAT 
^9401      ^9411      ^9421      ^9431      ^9441      ^9451      ^9461      ^9471      ^9481      ^9491      

AATTTTAAAA AAAAAAAAAA AAAA
^9501      ^9511      ^9521

Credibility of mRNA sequence:

unknown

The organism containing this mRNA with IRES segment in its genome:

Kashmir bee virus

A promoter reported in cDNA corresponding to IRES sequence:
not tested The total number of notable open-reading frames (ORFs):
2

Notable Open-Reading Frames (ORFs; protein coding regions) in the mRNA/+RNA sequence:

ORF

ORF position:

1

Version: `0`
Originaly submitted by: Martin Mokrejš	Reviewed by: Martin Mokrejš

The abbreviated name of this ORF/gene:
NS

The description of the protein encoded in this ORF:
non-structural polyprotein

The translational frameshift (ribosome slippage) involved:
0 The ribosome read-through involved:
no

The alternative forms of this protein occur by the alternative initiation of translation:

not tested

The ORF absolute position (the base range includes START and STOP codons or their equivalents):

609-6410

ORF

ORF position:

2

Version: `0`
Originaly submitted by: Martin Mokrejš	Reviewed by: Martin Mokrejš

The abbreviated name of this ORF/gene:
CP

The description of the protein encoded in this ORF:
capsid protein

The translational frameshift (ribosome slippage) involved:
0 The ribosome read-through involved:
no

The alternative forms of this protein occur by the alternative initiation of translation:

not tested

The ORF absolute position (the base range includes START and STOP codons or their equivalents):

6630-9296

Citations:

de Miranda JR, Drebot M, Tyler S, Shen M, Cameron CE, Stoltz DB, Camazine SM (2004) Complete nucleotide sequence of Kashmir bee virus and comparison with acute bee paralysis virus. J. Gen. Virol. 85(Pt 8):2263-2270

IRESs:

IRES:

Version: `1`	Last change: `2009-08-29 21:29:09`
Originaly submitted by: Martin Mokrejš	Reviewed by: Martin Mokrejš
The IRES name: `KBV_IGRpred`

The IRES absolute position (the range includes START and STOP codons or their equivalents):

6428-6629

Conclusion:
putative_IRES

How IRES boundaries were determined:
guessed

5'-end of IRES relative to last base of the STOP codon of the upstream ORF: `18`	3'-end of IRES relative to last base of the STOP codon of the upstream ORF: `219`
5'-end of IRES relative to first base of the START codon of the downstream ORF: `-202`	3'-end of IRES relative to first base of the START codon of the downstream ORF: `-1`

The sequence of IRES region aligned to its secondary structure (if available):

CACTGTTTCA TGGTTACCCA TCATTTGAGG AAATTTCCAA TAAACTTGAA TGTAAGGCTT GAAACAGTGG TCTAGGTGCC CTATTTAGGG TGAGGAGCCT 
^6428      ^6438      ^6448      ^6458      ^6468      ^6478      ^6488      ^6498      ^6508      ^6518      

AGCTGGCAGC CCCAGTGAAT CCTCTATTGG ATAGAAACCG CTATATCGGG TAGCTATAGC AGTCGGATAG TAATATATCC GGCGTTTCGA AATACCATAC 
^6528      ^6538      ^6548      ^6558      ^6568      ^6578      ^6588      ^6598      ^6608      ^6618      

CT
^6628

Remarks:

The IRES was NOT characterized experimentally. The presumed IRES region was taken over from Nakashima and
Uchiumi (2009) from Table 1.

Citations:

Nakashima N, Uchiumi T (2009) Functional analysis of structural motifs in dicistroviruses. Virus Res. 2(139):137-147

Last change to the database: 2019-03-18 09:32:49 GMT+1