IRESite_Id:625 summary record describing characteristics of SINV1

IRESite: The database of experimentally verified IRES structures

The nucleic acid data:

IRESite Id: `625`	Version: `0`
Originaly submitted by: Martin Mokrejš	Submission date: `2009-08-29 20:49:41`
Reviewed by: Martin Mokrejš

IRESite record type:

natural_transcript

The shape of the nucleic acid molecule translated: `linear`	The quality of the mRNA/+RNA sequence: `end-to-end_full-length_mRNA`
The abbreviated name of the virus/gene coding for this mRNA/+RNA molecule: `SINV-1`	The genetic origin of this natural mRNA/+RNA: `viral`

The GenBankId GI:# number of exactly this mRNA/+RNA sequence:
52631962

The mRNA/+RNA description:

Solenopsis invicta virus 1, complete genome.

The mRNA/+RNA sequence represented in the +DNA notation:

CATCGAGATC TATTGCTACC CTTCCAAATG CATATGAAGT TGTTGGCTGA CTTGGTTAAG ATGGTTGATA CCTCAGGCGC ATTTGGGACC AAACCTCGAA 
^1         ^11        ^21        ^31        ^41        ^51        ^61        ^71        ^81        ^91        

CCCAACCAGT TGTGATTTGG TTGTTTGGTG AAAGTGGCGT AGGTAAGTCA GGCATGTCCT GGCCCCTAGC CATTGATCTG AATAATATTT TCATGACAAA 
^101       ^111       ^121       ^131       ^141       ^151       ^161       ^171       ^181       ^191       

TAAGGAAGAT GCCCGGAACT TCTCGCGCAA CATATATATG CGAAATGTTG AGCAGGAGTT TTGGGACAAT TATCAAGGAC AAAACGTAGT TATATATGAT 
^201       ^211       ^221       ^231       ^241       ^251       ^261       ^271       ^281       ^291       

GATTTTGGAC AACGCAAAGA TTCCCAAGCA AAACCCAACG AAGAATTCAT GGAATTGATT CGTACAGCTA ACATCGCTCC ATATCCTTTA CATATGGCAC 
^301       ^311       ^321       ^331       ^341       ^351       ^361       ^371       ^381       ^391       

ATTTAGAAGA TAAACGAAAG ACTAAATTTA CATCAAAAAT TCTACTTATG ACATCCAACG TTTTTGAACA GAGTGTAGAT TCTTTAACCT TTCCTGATGC 
^401       ^411       ^421       ^431       ^441       ^451       ^461       ^471       ^481       ^491       

TTTCCGTAGG CGCATTGACC TGTGTGGTCG CGTGTCCAAT AAACCACAAT TTACCAAACC AGGTTTTTCA AAAGCAACTG GTCAAACTGT TAAAAGATTG 
^501       ^511       ^521       ^531       ^541       ^551       ^561       ^571       ^581       ^591       

GACAAAGATA GGGTTAGAAA AGAATTCAAT CAAGTTATTT CAACAGACGT TTATTTAATA GATTTAATTG ACGCAGAGAC TGGTGATGTC ATTGAAGAAG 
^601       ^611       ^621       ^631       ^641       ^651       ^661       ^671       ^681       ^691       

GATTGGATTA TGCAGAATTC CTAGAACGAG CAACACAGAA AACTAACGAA GCATTCAATC AATCCGTAGA ATTAAATGAA TTTTTAGAGA ATTATGCAGA 
^701       ^711       ^721       ^731       ^741       ^751       ^761       ^771       ^781       ^791       

ATCCCGATAT CGACTAGCAA CAATGCAGGT AGGCGATGAA TTTCATGACT GTAATAATTT ATTACTTATT AAGATAGAAA ACTTTGATGA TTTACCTAGC 
^801       ^811       ^821       ^831       ^841       ^851       ^861       ^871       ^881       ^891       

AATACGCTTT TATTTGATTC ACAAGGAAAT TCCAAATCTA AACGAGAAAT TGAGGAAAAT TTACAGAATG CATGGGTGGC AATGGAAGAA GACACTTCGA 
^901       ^911       ^921       ^931       ^941       ^951       ^961       ^971       ^981       ^991       

TGTGGCACGA TTCTTATTAT AATTTTAGAG ATGACATAGT GTATAAAAAG TATAAAAGAT CAGTATCAGA TAGAGAGTTT ACACTAATGA AGGCATATGA 
^1001      ^1011      ^1021      ^1031      ^1041      ^1051      ^1061      ^1071      ^1081      ^1091      

GTATTTTAAG AAACAATCTT CTAAATTTTT GAACGATACA CTAACGTATA TCAAAGAACA CCCATTTAAA GCTGTAGCTG GAGTAATGAT AGCAGTTTTT 
^1101      ^1111      ^1121      ^1131      ^1141      ^1151      ^1161      ^1171      ^1181      ^1191      

ACCTTGATGA CCATAGGCAA TTTTTGGTCT TCTTTCTGGT CGAAACCAGA GAGAGATAGG ACAACAAAGA TGACGGGTCG TCAGCARGGT AATATTGTTG 
^1201      ^1211      ^1221      ^1231      ^1241      ^1251      ^1261      ^1271      ^1281      ^1291      

AATTGCCCTA CAGAGGKGAA GAAGCGATAG ATTTAAGACA TCTTGAGGAA AAACAATTAA TAGAYTATTT GCACCATTTT ACATCTTCAG CGTTRGCAGG 
^1301      ^1311      ^1321      ^1331      ^1341      ^1351      ^1361      ^1371      ^1381      ^1391      

CTCAACATAT GCGTTCATAT TTAACCAACC CAATGCTGTT GCCTACGGTA TCTTAACAGG TGCCGTAGAA ACGGCGATTG TTTATATATA CGACAAATTT 
^1401      ^1411      ^1421      ^1431      ^1441      ^1451      ^1461      ^1471      ^1481      ^1491      

AGGCAACATG GTAAAACTGT GACGCCAGAG GTTGAAGCAG CAACTTCAGG TGATTGTATG ACGAAAGTGA AACCTCGCGT CATTCTGGAG GCCACAACAT 
^1501      ^1511      ^1521      ^1531      ^1541      ^1551      ^1561      ^1571      ^1581      ^1591      

CCGGTGATGC ACAAACGCAG TATAGATCTA AACCAAAAAT TGAAGCATTC ACGTCGGCGG ATGTAATAAC CATTACTAAA CCCAAAGTGA TGGTTGAGGC 
^1601      ^1611      ^1621      ^1631      ^1641      ^1651      ^1661      ^1671      ^1681      ^1691      

AGTGTCATCT GGCGATAGTA TAACTCAAAA CAAACCTAAA GCTAAGATTG AGGCAATGAC ATCTGGTGAC TCACATACCA TGGTGAAACC TAAGGCTAAA 
^1701      ^1711      ^1721      ^1731      ^1741      ^1751      ^1761      ^1771      ^1781      ^1791      

ATAGAAGCAC AAACTTCAGG AGATAATATT ACAATAGTGA GACCTAAAAT ACTAACAGAA GGAGATATTA TACCAGCGAA TATGCAAATG TGGAAGGATC 
^1801      ^1811      ^1821      ^1831      ^1841      ^1851      ^1861      ^1871      ^1881      ^1891      

AAGTTGCACA AAATTTAATT ACCCATCGTA TTTTCAACAA TTTATATAAA ATTTCGGCTA ATAATTGTTC AGTTCCCTTG ATGCATGGTC TTATGGTTAA 
^1901      ^1911      ^1921      ^1931      ^1941      ^1951      ^1961      ^1971      ^1981      ^1991      

AGGACGTATT ATGCTTATTC CAGCCCACAT TTTAGGATGT GGTATAAAAG CAGATACTGA AATTACCATG GAGAATATGT TTAAAGTTAA ATTTACATTC 
^2001      ^2011      ^2021      ^2031      ^2041      ^2051      ^2061      ^2071      ^2081      ^2091      

CCTTTCAAGA GCGTTAAAGT AACCCGCATA ACTAATCGAC ATGGAGAGTC AAAGGAAGCT TGTTTATTTG GGCTTCCAAA TTTGGTTCAT ACGCATTGTG 
^2101      ^2111      ^2121      ^2131      ^2141      ^2151      ^2161      ^2171      ^2181      ^2191      

ATATTACTAA ACATTTTTCA GATTCAGAAG CAATGTCATC TTATTCACGT GCGGAAGTTA ACTTACCTTT ATTGCGATAT TCCCAACATT TAGATAGCTT 
^2201      ^2211      ^2221      ^2231      ^2241      ^2251      ^2261      ^2271      ^2281      ^2291      

TATAGTACAC ATTCTTTCAG CTAATGATGC ATTTGCAATT GACCATCCCA TAATTCTTAA TGATGTAGAC TTGGGCAAAC ATGTTGTGAG AAGAGCATTG 
^2301      ^2311      ^2321      ^2331      ^2341      ^2351      ^2361      ^2371      ^2381      ^2391      

GAATATACAG CACCAACAAC AAACGGCGAT TGTGGCGCAC CATTAATCAT CAATGAACCC TCTGTCTTGC GAAAGATAGC AGGAATTCAT GTTGCAGGTG 
^2401      ^2411      ^2421      ^2431      ^2441      ^2451      ^2461      ^2471      ^2481      ^2491      

ACGCCCATGG ACGAGCTTAT TCAGAATCAA TTACACAAGC TGATTTAACT CGAGCTTATC CTGAATTTCC AGCGCGAATG CAAATTTGTC TGGACTGGGA 
^2501      ^2511      ^2521      ^2531      ^2541      ^2551      ^2561      ^2571      ^2581      ^2591      

TAATAAAATG AAGTTTCACC CAATTGAGAT TAAGCAAGAA TACACCAAAG CTGACTTTCC ATATGCTCCA GGAGACATGT TTGGTCCCAT AGGTAAGTGC 
^2601      ^2611      ^2621      ^2631      ^2641      ^2651      ^2661      ^2671      ^2681      ^2691      

CCCCACCAGT TATTTGAGCC CGGTAAAACA GATATTCGAC CTAGTGTAAT TTATGGTAAG GTAAAACCTC CTATTACGAA ACCCGCTATT TTACGGCATT 
^2701      ^2711      ^2721      ^2731      ^2741      ^2751      ^2761      ^2771      ^2781      ^2791      

CCGAAGTTAA TATGAAATTT AAGAATTTGC AAAAATGTGC TTCAAACGTA CCGTACATTA ATGAAGATTG GCTTGAGGAA GCATATTTAG ATGTAAAGCA 
^2801      ^2811      ^2821      ^2831      ^2841      ^2851      ^2861      ^2871      ^2881      ^2891      

ATTATGGAAT TCTAAAAGAA ATGATGCGTT TCGGCGGATT TTAACAGATG AAGAAGTAAT TAAAGGAAAT GATATTTCAG AATATATTTC TAGTATAAAT 
^2901      ^2911      ^2921      ^2931      ^2941      ^2951      ^2961      ^2971      ^2981      ^2991      

CGACAATCAT CCCCAGGTTA CCCATGGATT TTAGATCGTA AACCAGGCTT TCCAGGTAAG ACTCAATGGT TTGGGAACGA TGAAGATTAC AAAATTGATC 
^3001      ^3011      ^3021      ^3031      ^3041      ^3051      ^3061      ^3071      ^3081      ^3091      

CTGACGTGAT GCAAAAAGTA CATGAAAGAA TTGAAAACGC AAAACAAGGA ATACGGACCC CAACTTTTTG GGTTGACACG CTCAAGGATG AGCGACGACC 
^3101      ^3111      ^3121      ^3131      ^3141      ^3151      ^3161      ^3171      ^3181      ^3191      

TATTGAGAAA GTTGATGCAC TCAAAACACG CGTCTTTTCG AACGGACCCA TGGATTTTAA TTTGGCTTTC CGCAAATATT TTCTAGGATT TATAGCGCAT 
^3201      ^3211      ^3221      ^3231      ^3241      ^3251      ^3261      ^3271      ^3281      ^3291      

TTAATGGAAA ATCGAATAGA TAATGAAGTA GCAATAGGCA CCAACGTATA TAGTAGAGAT TGGACAAAAC TGGCTAAGAA ATTAAAACAG AAAGGTAAGA 
^3301      ^3311      ^3321      ^3331      ^3341      ^3351      ^3361      ^3371      ^3381      ^3391      

ACGTTTTTGC AGGGGATTTT TCAAATTTTG ATGGATCCTT AAATGCCATG ATTATGTATT TGTTTGCCCG GATGGCAAAC GAATTCTATG ATGATGGTAA 
^3401      ^3411      ^3421      ^3431      ^3441      ^3451      ^3461      ^3471      ^3481      ^3491      

TGACCTGATC CGTTATGTTT TAATTGAGGA GATTTTGAAT TCAGTACATC TTTGTGAACA ATTCTTCTAT ATGATGACCC ATTCCCAACC ATCTGGCAAT 
^3501      ^3511      ^3521      ^3531      ^3541      ^3551      ^3561      ^3571      ^3581      ^3591      

CCTGCAACCA CTCCCTTAAA TTGCTTGATC AATTCGATAG GTTTGCGGTT GTGTTTCCTC CGGTGTTTTG AAGAACACAA GGCCTTCTTT ATGGAACTTA 
^3601      ^3611      ^3621      ^3631      ^3641      ^3651      ^3661      ^3671      ^3681      ^3691      

TGAAGAAATT TGGCTGTAAA ACACGGATGG AGCTATTCAG ATTGCTAGTA TCACTGATAT CCTATGGAGA TGATAATGTA ATCAATATTC ACCCCCTGAT 
^3701      ^3711      ^3721      ^3731      ^3741      ^3751      ^3761      ^3771      ^3781      ^3791      

TTCCCATTTA TTCAATATGA ATACAATCAC AAAATACTTT GCGGAATTTG GATTTACATA TACAGATGAA ACAAAGCAAG TAGGAAAAGG AGTGCCTGAT 
^3801      ^3811      ^3821      ^3831      ^3841      ^3851      ^3861      ^3871      ^3881      ^3891      

TATAAAACTC TGGAAGAAGT TTCGTTTCTC AAGAGAGGAT TTATCTTCAA TGAGGAGCGA AATTGTTATG ATGCGCCCTT GGACATCAAT ACAATTCTAG 
^3901      ^3911      ^3921      ^3931      ^3941      ^3951      ^3961      ^3971      ^3981      ^3991      

AGATGATTAA TTGGGTCCGG AAAGATTTGG ATCAAGTGGA GAGCACTAAG ATTAATTGTG AAAATGCAAT TATGGAATTG GCTATGCATC CACGGGCTGT 
^4001      ^4011      ^4021      ^4031      ^4041      ^4051      ^4061      ^4071      ^4081      ^4091      

TTTTGATAAG TGGACCCCAC AGATCGAGAA AGCTTTTTAT GACAAAACTG GCGTGGTCTT GAACCACAAT TCWTATGACG GCTATTGGCA TTTACGAAAT 
^4101      ^4111      ^4121      ^4131      ^4141      ^4151      ^4161      ^4171      ^4181      ^4191      

ATGGAATACT TTTTATAAAA CGTTTCTCTT CTGGTTACCA GCAACATAGG AAATTGTCGT TGAACTACAT GTTGTAAGGC TTTAGAGAAA TAAGGGAGTG 
^4201      ^4211      ^4221      ^4231      ^4241      ^4251      ^4261      ^4271      ^4281      ^4291      

TCCTATTTAG GATGAGGTGC TCCGGTGGCA GCCCCACCAA AACCTCTAGC GACTAGGAAC AGCTATATCG GGTTGCTATA GCAGTCAGGA TGTCATTCTG 
^4301      ^4311      ^4321      ^4331      ^4341      ^4351      ^4361      ^4371      ^4381      ^4391      

GCGTTCCGAA ATACCCAAAC CTGCTCAATC AAACAATGCG AATACTTTTG AGACGAAAAC GGCAACAACC TCTGCTTCCC ACGCACAATC GGAACTTAGC 
^4401      ^4411      ^4421      ^4431      ^4441      ^4451      ^4461      ^4471      ^4481      ^4491      

GAGACGACCC CAGAAAATTC CCTTACCAGA CAAGAACTCA CAGTTTTCCA TGATGTTGAA CAACCTCGCG TCGCTCTTCC AATTGCTCCG CAAACGACTA 
^4501      ^4511      ^4521      ^4531      ^4541      ^4551      ^4561      ^4571      ^4581      ^4591      

GCTCTCTTGC TAAGCTTGAT TCTACAGCGA CAATTGTGGA TTTTCTTTCT AGAACTGTTG TCCTCGATCA ATTCGAGCTT GTTCAAGGTG AATCAAACGA 
^4601      ^4611      ^4621      ^4631      ^4641      ^4651      ^4661      ^4671      ^4681      ^4691      

TAACCACAAA CCCCTTAACG CAGCAACTTT TAAAGACCCC CAACCAGCCA TCAGACAGTA TTCCTTGCCA GGAGACATTC TTAAGCTGGG TGGCAAGTTA 
^4701      ^4711      ^4721      ^4731      ^4741      ^4751      ^4761      ^4771      ^4781      ^4791      

GATAAGGCAA ATAACCATCA ATACTTTAAG GCAGATTGTC ACATAAAATT AGTTTTAAAT ACAAATCCCA TGGTGGCCGG AAGATTTTGG CTAACATATT 
^4801      ^4811      ^4821      ^4831      ^4841      ^4851      ^4861      ^4871      ^4881      ^4891      

CCCCATATGA ACATAAAGTA GATAAGGCAA GACGCCAGCA ATATAATAGT AGAGCTGGAG TGACAGCATA TCCTGGAATA GAAATGGATG TTCAAATCAA 
^4901      ^4911      ^4921      ^4931      ^4941      ^4951      ^4961      ^4971      ^4981      ^4991      

TGATTCAGCA GAAATGGTTA TCCCATTTGC TTCCTACAAA GAAGCTTATG ATTTAAATAC TCCCACCCCT GAAGATTTTG TTACATTATC TTTATTCGGT 
^5001      ^5011      ^5021      ^5031      ^5041      ^5051      ^5061      ^5071      ^5081      ^5091      

ATAACAGATT TACTAGCTAA AAATGGTAAT AATTACGCAG TAGGAATTAC CATCTTAGCC TGGTTTGAAA ACATAACAAT TAATCTACCT ACAATAAAGA 
^5101      ^5111      ^5121      ^5131      ^5141      ^5151      ^5161      ^5171      ^5181      ^5191      

ATATCCCATA CAGGCAATTA CCCCACACCA ATACTAATAC TAAGAAAATT GAAATAGATC GCAAATTAGC TAAATTAGAA AAGAAGAATC CTTCGGCCTA 
^5201      ^5211      ^5221      ^5231      ^5241      ^5251      ^5261      ^5271      ^5281      ^5291      

TAAATATATA ACTAATATTT TAGATATACG ACCAGCCACC ATGCAAACCG CATGGGGTGC CCCATCACAG TTGCTAATTA AAGATATTCT AGATCTAGCA 
^5301      ^5311      ^5321      ^5331      ^5341      ^5351      ^5361      ^5371      ^5381      ^5391      

CCAGTGCTTA ATGAACTTCA AGCAGTATTG TCTGATGTGT GTGGATCAAT TAGGAACCGA GACTTTTCGT TGAGGCCCTT GTATAAAGTA CGCATACATG 
^5401      ^5411      ^5421      ^5431      ^5441      ^5451      ^5461      ^5471      ^5481      ^5491      

CAATGCAAGA CTTAATCAAT GATTCCCTAA AGAGGATGTT TGATACATAT GAGGCCCTGG ACGAGACGGA TCTTATGAGT GAAGACACAC CAGATAATGC 
^5501      ^5511      ^5521      ^5531      ^5541      ^5551      ^5561      ^5571      ^5581      ^5591      

TTTTCCAACT ATGGTTTTAT ACTTAGATTC CCTTAAGAAA ATTAACAAGT CAAAATCAGA GTATGTTGAG ATGCAGTTGG ATGCCTATGA TGCACGGGAT 
^5601      ^5611      ^5621      ^5631      ^5641      ^5651      ^5661      ^5671      ^5681      ^5691      

ATTGATGGTA TGCTGAATGC GTACGATCAA TTGAAAGAGT TTAACCATCA TACAGCAAGA AAGGAAATGG TGTCAATGAT GCATCTGGGC TACCAATATT 
^5701      ^5711      ^5721      ^5731      ^5741      ^5751      ^5761      ^5771      ^5781      ^5791      

CTCAACGACG ACACCGACGT GATGTGACAG CAGCGAGAGC CATAGCGGAT ATGATACTTG TCGACGAGCG TGATGCGACG ATGCAAGTGC AAGCAGAAGT 
^5801      ^5811      ^5821      ^5831      ^5841      ^5851      ^5861      ^5871      ^5881      ^5891      

AGGAGGACAG GGTTTGATCA CTGACATAGC TTCCACCGTT TCGGCGGTGG CAGGTGCGGT CAGTGGTATC CCTGTCATAC GTGAAATAGC ATCTACCGTT 
^5901      ^5911      ^5921      ^5931      ^5941      ^5951      ^5961      ^5971      ^5981      ^5991      

GGTTGGGTTT CTGACATAGT TGGAGGAATT TCCTCTATCT TTGGATGGTC TCGACCAAAT GATATGGAGA AAGTGACATC TTTGGCTAAC GTCCCCGGCA 
^6001      ^6011      ^6021      ^6031      ^6041      ^6051      ^6061      ^6071      ^6081      ^6091      

AGTATTATTC CCATGTAAAA GCGATAGATA ATAGTGTAGC TTTAGCTTTG AGTAATGAGA ACGAGCTTCT CCCACTTAGC GACATCTTTC CCTCAGCGGT 
^6101      ^6111      ^6121      ^6131      ^6141      ^6151      ^6161      ^6171      ^6181      ^6191      

AGATGAGATG GACTTGGCAT ATGTGTGTGC TAATCCTGGA GTGAAGGAAG TCATTACGCG GTCGAAAACG GACCCYATGA ATAGAACTTT AGCTTTAATG 
^6201      ^6211      ^6221      ^6231      ^6241      ^6251      ^6261      ^6271      ^6281      ^6291      

GAAGTGGGAT TACCTAGTTT TAATAGATAC CAAGATAAGG CAATAGATTG TGATAGTGAA CCTACCCCAT ATAATATCTG TAACAAAGRT TTGATCAAAC 
^6301      ^6311      ^6321      ^6331      ^6341      ^6351      ^6361      ^6371      ^6381      ^6391      

CAAATGGGAA CATCATTTTG AGCCCTGGAG ATCTGGTGCA GATGAAGGGC AGCTTGGCTG CGACAATTTT GGATACTGTT CCTTGTGAAT ATGTGTCCCA 
^6401      ^6411      ^6421      ^6431      ^6441      ^6451      ^6461      ^6471      ^6481      ^6491      

ATTGTTTCAG TATTGGCGTG CTACCATTTG CTTTAAGATT TCTGTGGTAA AGACCGGTTT TCATACAGGA CGTTTAGAAA TTTTCTTTGA CCCGGGTGAG 
^6501      ^6511      ^6521      ^6531      ^6541      ^6551      ^6561      ^6571      ^6581      ^6591      

TATCTAACGA ATCCTAAGGC GGATTGGCAT AATTATGTTG ATCTTTCCGC TTACGATAAA GTGGATACCG CAAATTCTTA CAAATATATT TTAGATTTAA 
^6601      ^6611      ^6621      ^6631      ^6641      ^6651      ^6661      ^6671      ^6681      ^6691      

CAAATGATTC AGAAATTACT ATTAGAGTGC CATTTATTAG CGATAGGTTA GCTTTAAGTA CAATTGGTGC TAATAGTTAT GGTGAGGACG GTGTAATGGG 
^6701      ^6711      ^6721      ^6731      ^6741      ^6751      ^6761      ^6771      ^6781      ^6791      

ACCCCCAAAT TTGAATGATA TTTTCGATTC AATGATTGGG TCTCTAATCA TCAGACCGCT TACAAAACTT ATGGCGCCAG ATACAGTTTC AGATCAAGTT 
^6801      ^6811      ^6821      ^6831      ^6841      ^6851      ^6861      ^6871      ^6881      ^6891      

AAAATAGTAA TTTGGAAATG GGCAGAGGAT GTACAGCTCC TTGTTCCCAA AGAATCGAAC CAGCTCGAAA TAGTTCCATA CGAGTTCGAG CGAACACCAG 
^6901      ^6911      ^6921      ^6931      ^6941      ^6951      ^6961      ^6971      ^6981      ^6991      

GTTTGACCTG CAAGAAACAG AAAATATCAG ATGAAGATAT GAAGGTGTTT ATTGCACATT GGGAAAAAGA TGGCAAATGG ATTTGTACTT CAGACCCAAC 
^7001      ^7011      ^7021      ^7031      ^7041      ^7051      ^7061      ^7071      ^7081      ^7091      

TACAAGCATG GTTTTCTCAT GGGGACAATA TCCCTTATGT GAGACTAGAA ATGCCACAAT GCAGATCAAC ATTTCCAATG AAGCATCAGG AAACAGTATC 
^7101      ^7111      ^7121      ^7131      ^7141      ^7151      ^7161      ^7171      ^7181      ^7191      

GATATTTTCC AGGATAATAA TGCAGGTGTG AGTCCAAATG CAGTAATGGG TAAAATTGCG GGTGAACGTC TAGTTAACTT GCGACCACTA CTGCGCTGCT 
^7201      ^7211      ^7221      ^7231      ^7241      ^7251      ^7261      ^7271      ^7281      ^7291      

TCCGATCTTT GGGTGGCATA ACGCTTGATC GGGCAGGACA AATTCTGTCT GAAAGAGTGT ATTGGAACCA CAAAGATTAT GTTAGCATAC TCTCATATCT 
^7301      ^7311      ^7321      ^7331      ^7341      ^7351      ^7361      ^7371      ^7381      ^7391      

GTATCGTTTT TCCAGAGGGG GATATCGTTA CAAATTCTTT GCAGACGATA ACGAACAGGG ACAAGTCATG TCAACGCTTG TCAAAAATTA CTACAAGGAC 
^7401      ^7411      ^7421      ^7431      ^7441      ^7451      ^7461      ^7471      ^7481      ^7491      

CATGCAACAA GTACTGGTCC ATCCCATATG ACTTACAATA ATATTAATCC CGTACATGAA ATTATGATCC CATATTATTC TCAATATAGG AAAATCCCAA 
^7501      ^7511      ^7521      ^7531      ^7541      ^7551      ^7561      ^7571      ^7581      ^7591      

TTTCAGGCGA AGTAGAATTA ATTAAAGGTA AGATTCAAAC TCCCGTAGAA AAGGGCATTA AAGGTGAGCT TTATCGCTCA GGAAATGATG ACCTAACCTA 
^7601      ^7611      ^7621      ^7631      ^7641      ^7651      ^7661      ^7671      ^7681      ^7691      

TGGGTGGATC GTTGGATCGC CCCAGCTTTA TGTTGGAGCG GCTCAACGAT GGAGTTGTTG GACAGTAACA AAGCCAACAC AACTAGTCAC TAAGGAAACT 
^7701      ^7711      ^7721      ^7731      ^7741      ^7751      ^7761      ^7771      ^7781      ^7791      

TAATGGATAG TAAATTTTGC TCTTCAAAGA CAGTCAAATC TTTGGAGTTC GGTTTTATTC TTCAAAATTC TTTTAAAACA GAGGATGCAT AGTTAATGGC 
^7801      ^7811      ^7821      ^7831      ^7841      ^7851      ^7861      ^7871      ^7881      ^7891      

GAGCACTATC GTCCGGAATG ACACCGTTGA GAAAACTCAC TAGATGGAGG CTCATTGGTT ATCAGCGTTC TGGGATAATC TAACGATTAG TTATGCAAAC 
^7901      ^7911      ^7921      ^7931      ^7941      ^7951      ^7961      ^7971      ^7981      ^7991      

GCATATTCAA GTAAATTACA ATTAAG
^8001      ^8011      ^8021

Credibility of mRNA sequence:

unknown

The organism containing this mRNA with IRES segment in its genome:

Solenopsis invicta virus 1

A promoter reported in cDNA corresponding to IRES sequence:
not tested The total number of notable open-reading frames (ORFs):
2

Notable Open-Reading Frames (ORFs; protein coding regions) in the mRNA/+RNA sequence:

ORF

ORF position:

1

Version: `0`
Originaly submitted by: Martin Mokrejš	Reviewed by: Martin Mokrejš

The abbreviated name of this ORF/gene:
NS

The description of the protein encoded in this ORF:
non-structural polyprotein

The translational frameshift (ribosome slippage) involved:
0 The ribosome read-through involved:
no

The alternative forms of this protein occur by the alternative initiation of translation:

not tested

The ORF absolute position (the base range includes START and STOP codons or their equivalents):

28-4218

ORF

ORF position:

2

Version: `0`
Originaly submitted by: Martin Mokrejš	Reviewed by: Martin Mokrejš

The abbreviated name of this ORF/gene:
CP

The description of the protein encoded in this ORF:
capsid protein

The translational frameshift (ribosome slippage) involved:
0 The ribosome read-through involved:
no

The alternative forms of this protein occur by the alternative initiation of translation:

not tested

The ORF absolute position (the base range includes START and STOP codons or their equivalents):

4390-7803

Citations:

Valles SM, Strong CA, Dang PM, Hunter WB, Pereira RM, Oi DH, Shapiro AM, Williams DF (2004) A picorna-like virus from the red imported fire ant, Solenopsis invicta: initial discovery, genome sequence, and characterization. Virology. 328(1):151-157

IRESs:

IRES:

Version: `2`	Last change: `2009-08-29 23:08:42`
Originaly submitted by: Martin Mokrejš	Reviewed by: Martin Mokrejš
The IRES name: `SINV1_IGRpred` Warning: please make ires_name same as the gene_name and optionally append to it coordinates. E.g. when gene/virus name is EMCV-R use EMCV-R_-222_to_-1 or EMCV-R_1-456, etc. but not Emcv-R-... or EMCV-222_to_-1. Please keep case of letters as well. This rewards when searching through the database.

The IRES absolute position (the range includes START and STOP codons or their equivalents):

4223-4422

Conclusion:
putative_IRES

How IRES boundaries were determined:
guessed

5'-end of IRES relative to last base of the STOP codon of the upstream ORF: `5`	3'-end of IRES relative to last base of the STOP codon of the upstream ORF: `204`
5'-end of IRES relative to first base of the START codon of the downstream ORF: `-167`	3'-end of IRES relative to first base of the START codon of the downstream ORF: `32`

The sequence of IRES region aligned to its secondary structure (if available):

TTTCTCTTCT GGTTACCAGC AACATAGGAA ATTGTCGTTG AACTACATGT TGTAAGGCTT TAGAGAAATA AGGGAGTGTC CTATTTAGGA TGAGGTGCTC 
^4223      ^4233      ^4243      ^4253      ^4263      ^4273      ^4283      ^4293      ^4303      ^4313      

CGGTGGCAGC CCCACCAAAA CCTCTAGCGA CTAGGAACAG CTATATCGGG TTGCTATAGC AGTCAGGATG TCATTCTGGC GTTCCGAAAT ACCCAAACCT
^4323      ^4333      ^4343      ^4353      ^4363      ^4373      ^4383      ^4393      ^4403      ^4413

Remarks:

The IRES was NOT characterized experimentally. The presumed IRES region was taken over from Nakashima and
Uchiumi (2009) from Table 1.

Citations:

Nakashima N, Uchiumi T (2009) Functional analysis of structural motifs in dicistroviruses. Virus Res. 2(139):137-147

Valles SM, Hashimoto Y (2008) Characterization of structural proteins of Solenopsis invicta virus 1. Virus Res. 136(1-2):189-191

Last change to the database: 2019-03-18 09:32:49 GMT+1