IRESite_Id:627 summary record describing characteristics of EoPV

IRESite: The database of experimentally verified IRES structures

The nucleic acid data:

IRESite Id: `627`	Version: `0`
Originaly submitted by: Martin Mokrejš	Submission date: `2009-08-29 22:26:42`
Reviewed by: Martin Mokrejš

IRESite record type:

natural_transcript

The shape of the nucleic acid molecule translated: `linear`	The quality of the mRNA/+RNA sequence: `end-to-end_full-length_mRNA`
The abbreviated name of the virus/gene coding for this mRNA/+RNA molecule: `EoPV`	The genetic origin of this natural mRNA/+RNA: `viral`

The GenBankId GI:# number of exactly this mRNA/+RNA sequence:
34610126

The mRNA/+RNA description:

Ectropis obliqua picorna-like virus, complete genome.

The mRNA/+RNA sequence represented in the +DNA notation:

CTTTTCAGCA ACGGCGGTAT TGAGTAATCT CTTAAGATTA TTTAATACGT GTTCTTACAT TTAAATTCAA ATAGTTAAGA TTTAATTAGG ATTAATTACC 
^1         ^11        ^21        ^31        ^41        ^51        ^61        ^71        ^81        ^91        

GATATTGTAA TCTTCTATTA TTTTATCGGT TTGAATCTCC CTTACACATA TGATTATGTA GCGTGCTTAT TAGTAGTAGA TACATCTAAA TTCTACAACG 
^101       ^111       ^121       ^131       ^141       ^151       ^161       ^171       ^181       ^191       

ACCTAATAAG TTTTGATTAT ATAAGATAGG ATGTGAAGGC TCCGATTTGT GAATAGGTTT TTATATTCGA AGTAGGTAGT ATTGCGCATA CTATTAATTC 
^201       ^211       ^221       ^231       ^241       ^251       ^261       ^271       ^281       ^291       

CACAATACGT GGTCTTCGTC TTAGCAAATT TACCTTTCGT CCCTATGGAA ATGGCTCTTC GGACCTGAGT ACAGTGGGAC AACCCCAACG ATGATGACGA 
^301       ^311       ^321       ^331       ^341       ^351       ^361       ^371       ^381       ^391       

CCCAAACAAA CCAACTATTT AATAGATCTC TTAACGACGA ACTTGGCAAC CGCACGGACA CGATTACTTT GCATCCATGG AATGTTTCTG AGTATGTTAC 
^401       ^411       ^421       ^431       ^441       ^451       ^461       ^471       ^481       ^491       

CAGCACCGGC CTTGCAGAAG CAGAGTTTGA GGCCTGTACT GGTAAAGACT TGGAAATTCA GAAGTACCTT GTTACTGTGT CGGAGGAATG TCCTTGTGGG 
^501       ^511       ^521       ^531       ^541       ^551       ^561       ^571       ^581       ^591       

CACCCAACGA CCTTTAGTGA GATTGATATG AGTAGAGGAA TGGTAATGGC GAGTAGTGAT AACATATACA GCGACGATAT AGTTACCTTG GTACCTACGG 
^601       ^611       ^621       ^631       ^641       ^651       ^661       ^671       ^681       ^691       

AAAACGGATA CGAGGATTCT GATCCGTGTT TCTGCGAAAA TCAAAAAGAA GACTGTGATA ATTGCATGTA CTTGCAGATA TTACGTATGG CACCGGGAAA 
^701       ^711       ^721       ^731       ^741       ^751       ^761       ^771       ^781       ^791       

ATGGAATATG ACTTATGGAC TTAGACACAA TCACCAAGCA CAACTGACGT ATTACCTCAC TGAAGAGCGT GGGTTTACCT GTGAGGGATA TACCTTAGAA 
^801       ^811       ^821       ^831       ^841       ^851       ^861       ^871       ^881       ^891       

GCTGACACTA GTGATAGTGA AGGCTTTGGT GACACAGCTG ATTATACTCT CTACTGTATT CAATATAGCG GAAAGTATAA GCAACGACGA CAATGGCACG 
^901       ^911       ^921       ^931       ^941       ^951       ^961       ^971       ^981       ^991       

TACTTTTAGA TGATGAGTCG TGTGGTTTCT GCAAGTACAG AGTTACCACT GGACTCATTG TCCCTGAAGT ACCACGACAC TGGACAAATG AACTTGGCCG 
^1001      ^1011      ^1021      ^1031      ^1041      ^1051      ^1061      ^1071      ^1081      ^1091      

TAGACAGAAT CTACTGGTAC CTAAGGTACT TGGACAGTAT GTAGATTTCA TTGAGGCGAA GAGTCCCTTG CGGCTAGATT GGTTATCAAT GAGTAAATTA 
^1101      ^1111      ^1121      ^1131      ^1141      ^1151      ^1161      ^1171      ^1181      ^1191      

GTGAGTGGTA AGTGTAGCTT ACCTAATTTT TATGTTAACC TAACGACTTT ACGCACGTTT CAAGTTGCTG GGGGAAAATT CTTACCATAT CTGTATAATG 
^1201      ^1211      ^1221      ^1231      ^1241      ^1251      ^1261      ^1271      ^1281      ^1291      

GATCGGCGGC GAACAACGAC CTAAAGCTGC CGATTCAAGT TACAGCTCAA GGTGATGAGG ATACCCCTGC TGGAGAACTG AGTATTGAGC AAGACACACA 
^1301      ^1311      ^1321      ^1331      ^1341      ^1351      ^1361      ^1371      ^1381      ^1391      

CGAAAATACA ACTTTGGCTG AATCGACGGA CGCCTCTACT GCCTATGTGG CTACAGAGGA ATTTTCAATG ATGCCTTGGA TAACTGACGG ACCGCACACA 
^1401      ^1411      ^1421      ^1431      ^1441      ^1451      ^1461      ^1471      ^1481      ^1491      

TACCCGGATT TAACTGAGCG TTGGACAAAG GCCTTTCAAT TTCAATGGAC GACAAGTCAG GCGCAAGGTG AGATTATACA ACGTTTTGAT TTGCCAATTG 
^1501      ^1511      ^1521      ^1531      ^1541      ^1551      ^1561      ^1571      ^1581      ^1591      

AGGCGATCCA GAACTTTATA AACTCACCAA ATGCACTACC TTGGCGGCAA CATGCGTTTT ATAAGTCGGA CATTGAATTG AAGGTACAAG TAAACTCACA 
^1601      ^1611      ^1621      ^1631      ^1641      ^1651      ^1661      ^1671      ^1681      ^1691      

ACCTGGACAA AGTGGTTACC TGATTTTAGG TGCCATGTAT GAGGCTTCAG AGGGAACAGC GATTGGGAAT CGAGTCGATC ATGCTGCGAA CATTGTTGCG 
^1701      ^1711      ^1721      ^1731      ^1741      ^1751      ^1761      ^1771      ^1781      ^1791      

ATGCCACATA TGCGTATATC AGCTGGATCG TCTAATTCAG GAGACATGGT TATTCCCTTT ATTAGGCACT TTCCGGTTGG TTGCATACTA AATAATGCAT 
^1801      ^1811      ^1821      ^1831      ^1841      ^1851      ^1861      ^1871      ^1881      ^1891      

TTGATGTACC CCAGTATTTT GTCACATTAT TTGTGGCCCC TCTACTTCAG TTGCGTACTG GAGCTGATGG ACCACAGGTA GTTGATGTAA CGATTATGAT 
^1901      ^1911      ^1921      ^1931      ^1941      ^1951      ^1961      ^1971      ^1981      ^1991      

TCGATTCCCA AATTGTGAAT TTTATGGACA ACGGACAACT GAGCAGATCG TGACTGCACA AGGTTGGGCC CCGGATTTGA CACAGGATGG AGATGTAGAG 
^2001      ^2011      ^2021      ^2031      ^2041      ^2051      ^2061      ^2071      ^2081      ^2091      

TCAAACCCCG GCCCCTTTCT TTCTGGTCTA TTGGGCACTG TGGCCGCTGT CGGTAAGACT GTTGCTGGGG CAGGCAGCAG TATTGGATCG ATTGCGACTG 
^2101      ^2111      ^2121      ^2131      ^2141      ^2151      ^2161      ^2171      ^2181      ^2191      

GAGTGTCTGG TGTAGCGAAT GGAATTGGTA GCATTGGGAG TGCTGCTGGA AAAGTTATTG GTGGCGTTGA GAGCCTGCTT CGACCCCTTT TCCCTAAAAA 
^2201      ^2211      ^2221      ^2231      ^2241      ^2251      ^2261      ^2271      ^2281      ^2291      

GGATATGGAT CGCCCACAGA ATATCATCGA ACCCACTAAC TTTTACTTGC AGCAGAATAC GAGCCTGTCT CTTGCTACTG GTACTAATAA CGTTAAGTTA 
^2301      ^2311      ^2321      ^2331      ^2341      ^2351      ^2361      ^2371      ^2381      ^2391      

TTACAACTAC AAGCGGAGAA TAGTGTTTCG CACCCACCTG GATTCGTCCC AGTGGATGAT CAATTTAACA ATCGATTTAT ACTTAGCGTT TTTGGATTGA 
^2401      ^2411      ^2421      ^2431      ^2441      ^2451      ^2461      ^2471      ^2481      ^2491      

GTGATTATTT TCAATGGTTT AGTGGCTCAG CTTCGGGCAC TTTACTGTAC TCATTCGATG TAACACCATT AAAATCCTTC ACACGGGGAA TACCATTACA 
^2501      ^2511      ^2521      ^2531      ^2541      ^2551      ^2561      ^2571      ^2581      ^2591      

ACCGGAATTT TATTTGACAC CGATGGCAGC GTTATCAGGA CAATATGGAG GGTACCATGG TGATATGGAG ATGCGACTAA CCTTCGCCGT GTCTAAGTTT 
^2601      ^2611      ^2621      ^2631      ^2641      ^2651      ^2661      ^2671      ^2681      ^2691      

CACTCTGGTA GAGTCTTTAT TGTCTACTCA CCCGATGTCG TACCAACATT TGATAATATT GGCGCTTATT ATAATGTGCT ACTTGATGTG CAGGATCAGT 
^2701      ^2711      ^2721      ^2731      ^2741      ^2751      ^2761      ^2771      ^2781      ^2791      

CAGTTTACAC TTTTAAGATC CCCTATCAAG TACCTACGCC ATATGCGCCC ATATTTGAAT CGTTACAAGG CGACACTGGC ACCTTTTTAA CGCCGGCTGT 
^2801      ^2811      ^2821      ^2831      ^2841      ^2851      ^2861      ^2871      ^2881      ^2891      

TTCAGCTGGG AATGTGCGGT GCATGGCTTA TGGCTTTGTT TCTATATTCG TAGAGAATCA GCTAAGGGTG ATGCAGACCG CAGCACCAAC AATTGATGTA 
^2901      ^2911      ^2921      ^2931      ^2941      ^2951      ^2961      ^2971      ^2981      ^2991      

TTAGTAGAAC TGCGCGGAGC TGATAATTTC CACCTGGTTT TGCCAGCTGG GGGTAAGTTC CGCTCACTAT CAACAATAAC AACGACTGAG GCCCCCGTAG 
^3001      ^3011      ^3021      ^3031      ^3041      ^3051      ^3061      ^3071      ^3081      ^3091      

TGACCGCTAT GGGAGATGAA CGACGGGAAC CACACACAGT TAATCCCCCA CCACGGAGGA TAATGCCGGT GTGGGCTGCA CAACTAAATG AGAGCTATGA 
^3101      ^3111      ^3121      ^3131      ^3141      ^3151      ^3161      ^3171      ^3181      ^3191      

TTGTAGGGAC GTAGTAAAGC GTTACCATGA TTGGTTTGAC ATAGTCTCGC CAGCTGTAGT GGCTGGCAGA GGATTCACTG ACATGTACAT GAACGTTACG 
^3201      ^3211      ^3221      ^3231      ^3241      ^3251      ^3261      ^3271      ^3281      ^3291      

GTATTTCATG TACCAGTGCC CGCATTTGAT GCGGCACCAA TACAAAATGT ACAGTTCACG GACATGTTAG TGGGTTCATC TATCTTAAAC AAATCAATGG 
^3301      ^3311      ^3321      ^3331      ^3341      ^3351      ^3361      ^3371      ^3381      ^3391      

TTTTAGCGCG TGAGCGCATA AACCTGGCGA CAAACAACAC CATTTCTATA CGAGTGCCAT GGACTAATTA TGCGAGTATG ATTAGTAATT CCATAAACCC 
^3401      ^3411      ^3421      ^3431      ^3441      ^3451      ^3461      ^3471      ^3481      ^3491      

AGCCTCTGGG AGATCGAATA CAATGGCACC TTACAGTAAT GGTAGAGTAG TAGTCTACAT TGAGTACTTA TCATCTTACA CTACGACCTT AGGAGCGTTT 
^3501      ^3511      ^3521      ^3531      ^3541      ^3551      ^3561      ^3571      ^3581      ^3591      

AGAGTTGTCT GGGATGTGAC TGCCGGATCA GCTTCAACCC GACCCGACAC TTACACCCCA GATATGCTAA CGCTTCTGCA TGATGGCTTT AGATTTGCAA 
^3601      ^3611      ^3621      ^3631      ^3641      ^3651      ^3661      ^3671      ^3681      ^3691      

AGGGTGATTT TAATTACCAA ATGGATTTCA CACCCGTCCC CAGTGGGGCT AACACTGCAA TTCGTATGCG GTGTTTCAGG GCCTATGGTG ACGGAGGAAA 
^3701      ^3711      ^3721      ^3731      ^3741      ^3751      ^3761      ^3771      ^3781      ^3791      

CCTTTACGTG TTCCAGGGAT TCCCGAAAAT GCTAGGTACT TATACACCTA GACAAGCAAT TTCGGGGGTC ACTCCAACAC GTGGTGGTTT ACAGCGTCAA 
^3801      ^3811      ^3821      ^3831      ^3841      ^3851      ^3861      ^3871      ^3881      ^3891      

AACATTATTG GTGGTGGCCA AAGGGATCTG ACTCAAGATG GCGACATCGA GTCGAACCCC GGCCCAACCC AATCGAAACC AACCGGTGCA CAGCCCCCTC 
^3901      ^3911      ^3921      ^3931      ^3941      ^3951      ^3961      ^3971      ^3981      ^3991      

CAGACGATAT CTTGACTGAT GAGGACAGAG AAGGGCTGGA GGGGGGGAGT ATAAGAATCT CATTCTTTGA AAAACTTGGC GATTACTGCA AACGGGCCCT 
^4001      ^4011      ^4021      ^4031      ^4041      ^4051      ^4061      ^4071      ^4081      ^4091      

TGGCTGGTCT GGTGAGCGTA TCGTTGAGTT TATCAGAGAA CTACGTAGTA TTAAGAAACA TGTTGGGTCT ATCCCTGGCA TGACTAGAAT AAGTGAACTG 
^4101      ^4111      ^4121      ^4131      ^4141      ^4151      ^4161      ^4171      ^4181      ^4191      

ATTACGACTA TTAAAGAGCT CAGTGTGGTC ACTAACGGGT TAAACCGTAT GAGTGCTGCA GTTGAGGAAC TGAATGAACA GATAAAGAAG ACACGGGAAA 
^4201      ^4211      ^4221      ^4231      ^4241      ^4251      ^4261      ^4271      ^4281      ^4291      

AGGTTGAAAC CTTCGTTGGG GGTGTTGGTG GTAAGCTCAA CTCATTGGAT ACAGGTGACC TTGTGTCCAA TGGTATTGAG TATGTTGCCT ACATCCTAAA 
^4301      ^4311      ^4321      ^4331      ^4341      ^4351      ^4361      ^4371      ^4381      ^4391      

TATCTATAAT TCGAAGTCGG TCGGCATGAC ATTGATTAAC GTTGCAGCAC TATTGTCAAA AATGGGGCTG GGGCGTTATT TAGTTAATGA CTTAGTCGAC 
^4401      ^4411      ^4421      ^4431      ^4441      ^4451      ^4461      ^4471      ^4481      ^4491      

CGGCTTGGCA CTTTCGCCAA AGGTGAAGAC ACTGAAGAGA TAGAGAGAGA GTATACATCT CTAATTATCA CTGGTGTGCT TGGAGCTTTT GGTTTGGGTA 
^4501      ^4511      ^4521      ^4531      ^4541      ^4551      ^4561      ^4571      ^4581      ^4591      

CCATGAATGT GGAGAAAGAA GGTTTTGTGA AGCCGTTTTT ATCCAATGTT AAGGACTTCT TTAGGAACGG TTTTGCCGTG AAGAAGTTTC TTGATTCCCA 
^4601      ^4611      ^4621      ^4631      ^4641      ^4651      ^4661      ^4671      ^4681      ^4691      

CTTTAAATGT ATTAATGATA TTTGTGGATG GGTAAGATCA AAAATATTTG GAAAAGTAGA TAAAGGGGGG TTAACAGTGG ACCTGTTAGT CTGGTGTGAG 
^4701      ^4711      ^4721      ^4731      ^4741      ^4751      ^4761      ^4771      ^4781      ^4791      

CGTGTTCAAG TGCTTGCAGA GGTATACAAC TACGACACGA TTTTAAACGA CCCGGAATTT GCAGAGACCT TGCTGTCTCT ACAGGATGAA GCGTTCGAGT 
^4801      ^4811      ^4821      ^4831      ^4841      ^4851      ^4861      ^4871      ^4881      ^4891      

TTGACCGTCT GTTCATTGCT TCACGAATTA GGCCACCTAA TCAGTACAGC ATGTATAGAA CGAAATTACA AAGAGCAATA GACCTGTTGG GACAGCAAGG 
^4901      ^4911      ^4921      ^4931      ^4941      ^4951      ^4961      ^4971      ^4981      ^4991      

CACTATGCAA AAGTCGAAGC CTGTGCCTTT CTGTCTTTGG GTGTATGGAC ACTCAGGGTG TGGAAAGTCA CATGTTTGTG ACAATGTTTT AACGGAAATA 
^5001      ^5011      ^5021      ^5031      ^5041      ^5051      ^5061      ^5071      ^5081      ^5091      

GGTAGTGCTC TCGGCATAAA TACCGCGAAC CCTATCTATA CACGATCACC TGATGTTGAG TTCTGGAATG GTTACACAGG ACAGAAATTA ATATCGTGGC 
^5101      ^5111      ^5121      ^5131      ^5141      ^5151      ^5161      ^5171      ^5181      ^5191      

AAGACTTTGC GAAAATAACG ACTGGTGAGA CGTATAGGAA GCAGGTGTCG GAGTTATCTT CATTGATAGA GCCCACACCA TTTAATCCGC CATTTGCTGC 
^5201      ^5211      ^5221      ^5231      ^5241      ^5251      ^5261      ^5271      ^5281      ^5291      

TTTAGAAGAT AAAAGGAAAA TAGCGGATGC CTGGGCTGTA TATGTATCAA GCAATAAGGC GTTCCCAGAA GTTCAAAATA TGGGTATGGA GGACTCAGCT 
^5301      ^5311      ^5321      ^5331      ^5341      ^5351      ^5361      ^5371      ^5381      ^5391      

CTTTTCTATA GGCGTAGACA TGCGCTAGTA AAGATGCGGA TTAATCCAGA GATCATCCAA GAATATGCTA GAAGGGAACC GCCCATTAGC TTAGAGGACA 
^5401      ^5411      ^5421      ^5431      ^5441      ^5451      ^5461      ^5471      ^5481      ^5491      

AATACAAAGG GCAAACGGTG TATTATCCCA GTAATATACC AAGTGAGGAT TTTGCTACAA GAGGACCATA CTTTCACGTT CAATTTGCTT TCCACGTAAC 
^5501      ^5511      ^5521      ^5531      ^5541      ^5551      ^5561      ^5571      ^5581      ^5591      

GAGTCTATCG ACAGCGGAAC CTACTGAATG GTTGGGCTAC GATGGGTTTA TTGCCGAAGT GACAAGGAGA GCAATTGATC ACAGACAGAG GGAGGTTGAT 
^5601      ^5611      ^5621      ^5631      ^5641      ^5651      ^5661      ^5671      ^5681      ^5691      

GCGTGTATCC AACGACGGGG CATCTATTCA AAGTTGCGGC GTTCCGCACC CACGGGTGTT GAATTCCGTG AGGAGGTTAG AACATTAAAG GAGGAACTGG 
^5701      ^5711      ^5721      ^5731      ^5741      ^5751      ^5761      ^5771      ^5781      ^5791      

ATCGCCTTAC GCAAGAAAGG GTAGCAGAAG CACATGGATC CGATAACGCA GTAAAGAACT TGGCAACGAC AATGGACTAT GAAAAACGAG CAACGTTTGA 
^5801      ^5811      ^5821      ^5831      ^5841      ^5851      ^5861      ^5871      ^5881      ^5891      

GGAAACTGAG GCACTTGGTT CTGTAATTTT GCAATATCGT TTAGATCCAA ATTGCGATTG CACGAATCAA GCTATTATGA AGGCGGCCAC TTCCAATGAA 
^5901      ^5911      ^5921      ^5931      ^5941      ^5951      ^5961      ^5971      ^5981      ^5991      

CCAAGGAAAA TATGCGAGGT ATCATTTTGT GAAAAATGTG AGCCAGTCAA TCAACGTAAG AAAAATGTAT ATAAAGCGAT GAGTGAACAA CTTGAAGGAG 
^6001      ^6011      ^6021      ^6031      ^6041      ^6051      ^6061      ^6071      ^6081      ^6091      

TGGCTGTATC AAACCCCTTT GGTGGTATCG CAATGATAGA GAGGGGTGAT AGTGCTAGAA TTCCACGTGC GGGGCGACAG TACACACCAC TTGATTATGC 
^6101      ^6111      ^6121      ^6131      ^6141      ^6151      ^6161      ^6171      ^6181      ^6191      

GAGGCAGGCC ACCATAGGGA CATTGAAGTG GATTCAAGGT AAAGGACTAC CAGCGGGGTA TGCGTACTGG TCTGAAATAA TGCCAGTGTG CTGCCATAAG 
^6201      ^6211      ^6221      ^6231      ^6241      ^6251      ^6261      ^6271      ^6281      ^6291      

AAGGAAATAT TGGAGTTAGC TTACTTTGAG AATGTAGGAG ATAACATAGA GTTAGTTTTG GATCTGAGTA GTATGAAGGC CCGCCATGGG GTTTCCTTTC 
^6301      ^6311      ^6321      ^6331      ^6341      ^6351      ^6361      ^6371      ^6381      ^6391      

CACTCTTCCA TAAGCTTGAG TGGTTCGATT TGCGAAAGTT GGATGCTTGG GCCACCACTG GTTTCAAGGT GATTCTTCCA GTTGTGTGTG AGCAATCGAA 
^6401      ^6411      ^6421      ^6431      ^6441      ^6451      ^6461      ^6471      ^6481      ^6491      

GTTTAACTGG AATAATTGCA TTGAAGTCAA GCCTGGAGAG CGGGGTAGGA TACCAATCAC ACCCAAGTGG GCTCCCGAGT TGATTGGTCG GGTAACATTA 
^6501      ^6511      ^6521      ^6531      ^6541      ^6551      ^6561      ^6571      ^6581      ^6591      

GAGGAATTTA AACGATCGTG GAGTTGTGAT GCAGTGCAGA AGCCTTCAGT TTCGTACTAT AAAATAGAAA AGGATCTCAT AAGGTTTTTG GTGTCTGGCA 
^6601      ^6611      ^6621      ^6631      ^6641      ^6651      ^6661      ^6671      ^6681      ^6691      

CTTATGTTCA GATCGAAGGA GTAGAGAATA TGACTGCTGG ACTTAATCAT CTTATGAGTT TACATACAAA GGACACGGTA GCGTTTTGCA ATTCGTTCTT 
^6701      ^6711      ^6721      ^6731      ^6741      ^6751      ^6761      ^6771      ^6781      ^6791      

CTATTGGAAG AGTGGAGGGA AGTTGCGGGC TGCAAAATTC TATCCATTTG TTAATGGAAT GCTAAAGGAT ATGTCATTTA TTTTTAGTAA CATCATGATC 
^6801      ^6811      ^6821      ^6831      ^6841      ^6851      ^6861      ^6871      ^6881      ^6891      

GCAGTGGGGG CAGTAATGTT GGCCTATAAG GTATATCGTT TGATCCGTAA TTCATCAGAG TGCGTTGAGG CGCAAGCAAA GGATTACGAC CAGAAGACGG 
^6901      ^6911      ^6921      ^6931      ^6941      ^6951      ^6961      ^6971      ^6981      ^6991      

AAGCACCAAA AATACCAAAG GTCAACTTCG TGCAATCTAC ACCAGTTGTA GTGGCGGCGA AAGGAGATGA GGAGCTCTCA ATTATTCACA ACTCGTTGTG 
^7001      ^7011      ^7021      ^7031      ^7041      ^7051      ^7061      ^7071      ^7081      ^7091      

CCAATTGAGA AAGGGATCAA TGAGATTACT GGGTGTACGA CTTTGTTCGA ACTTTGTTTT GGCCCCCCAG CATTTAGCTT GGGTGCCCGG CGAGTTCGGC 
^7101      ^7111      ^7121      ^7131      ^7141      ^7151      ^7161      ^7171      ^7181      ^7191      

ATATCGCTGC ACAGTAGTGG TGCTTGGTCC ACGGAATTAA TCTTCGAAGC AACAAGTGTC AAATACTCTT GTGTTAAAGG ATTTGACTAT GCAGTCTACC 
^7201      ^7211      ^7221      ^7231      ^7241      ^7251      ^7261      ^7271      ^7281      ^7291      

GGTTCGTGAC TTTACCAGCT GGGAGAAATA TAGTCAATTA CTTTACTACA AGGGCGCAAG GAGCAACCCT GAAATCTGAA GCCACATTAA TGACCCTATC 
^7301      ^7311      ^7321      ^7331      ^7341      ^7351      ^7361      ^7371      ^7381      ^7391      

AGGTGCATCA CTGCAGTTAA GACCAGTACG TATCAGTCAA TATACTGGCG CCCTTACCTA TGATAACGCA AGTTTTCCAG GTACGGGAAC TAGTATGATT 
^7401      ^7411      ^7421      ^7431      ^7441      ^7451      ^7461      ^7471      ^7481      ^7491      

GGTTGGCAGT ATTGGTTGGG GGCCCAATCC GTAAGGTGTG GCTCCCTCAT CATGAGTAAT AATTTACTGT GCGGTTTCCA TGTTGCACAG AATCTTAAGA 
^7501      ^7511      ^7521      ^7531      ^7541      ^7551      ^7561      ^7571      ^7581      ^7591      

CTGGTGATGC TTATGCCGTA AGCATATGCA AAGAGATGTT GGTCGAAGCA CTTAGGATCT TAGGAGCGAC TCCATTTGAC ATGAAAATGA AACGAACCAC 
^7601      ^7611      ^7621      ^7631      ^7641      ^7651      ^7661      ^7671      ^7681      ^7691      

ACCCATTACC ACTGTTGGAG AGCCCAAAAT GCAGCCGCCT GAGACTGCAG TCGTGATCCC CTTGGGTAAA GCCATTGAGC CTGTGCGGTA CTCAGGCAAG 
^7701      ^7711      ^7721      ^7731      ^7741      ^7751      ^7761      ^7771      ^7781      ^7791      

AGCAATCTTG AAAAGAGTAT CATGCATGGC GAGTTGGCTG AGCCCTTTCG GATCCCTGCT GCACAGTCTG CAACAGCGAA AGGCGAGTGC ATAGGGTATG 
^7801      ^7811      ^7821      ^7831      ^7841      ^7851      ^7861      ^7871      ^7881      ^7891      

ACATAGTGAT GAAGGGATGT GAGAAGCAAT TCAAACCACC GAAACCTATC GATCCAGAAG AAGTAGAGAA GATTGGCGAC TATTTGATTG AGCGTTTAGT 
^7901      ^7911      ^7921      ^7931      ^7941      ^7951      ^7961      ^7971      ^7981      ^7991      

ACCGCAATCA ATACCACTCA TCCCAACAAT ATCGGAACCT CTGAGCTTAG GTGAGGCCAT TGCTGGAATT GATGGAATAC CGCTTATGTG CGGCATGAAA 
^8001      ^8011      ^8021      ^8031      ^8041      ^8051      ^8061      ^8071      ^8081      ^8091      

TTAAATACCA GCATAGGCTG GCCCCTATGC AATGAGTATC CGAAGGGTAC GAAGAAGTCA AACATAATTC GAGTAGATAG GGAGGAAGGT GAAGTCCATG 
^8101      ^8111      ^8121      ^8131      ^8141      ^8151      ^8161      ^8171      ^8181      ^8191      

TAGATGTAGT GGCCTTTGAT GATTACGCAA AAGCCAATAC TCTCAGGAAA CAAGCCATTC TCCCACCCAC GACTTTTATG GACTTCCCAA AAGATGAGTT 
^8201      ^8211      ^8221      ^8231      ^8241      ^8251      ^8261      ^8271      ^8281      ^8291      

GTTGAAACCG GGAAAGGACA CGCGATTGAT AAATGGAGCC CCCCTGCACC ACACCTTGGA TATGCGACGT TACCTTATGG AGTTTTTTGC TGCAATAACC 
^8301      ^8311      ^8321      ^8331      ^8341      ^8351      ^8361      ^8371      ^8381      ^8391      

ACCATCAACA ATAAAATTGC CGTAGGTATA GATGTCCATT CAGGAGATTG GGCGTTGATA CATGGAGGAG CAGATGATGT TGTTGATGAG GATTATAGTG 
^8401      ^8411      ^8421      ^8431      ^8441      ^8451      ^8461      ^8471      ^8481      ^8491      

GCTTTGGCCC AGGTTTCCAT TCACAATGGT TGACCGTGGT CTGTCCCATA GCTGTAGCGT GGTGCAAACA TCATAAGAAA GTAGACAAGG AGTATGAGGA 
^8501      ^8511      ^8521      ^8531      ^8541      ^8551      ^8561      ^8571      ^8581      ^8591      

TGTGGTTAAC TGTCTTATAA TGGAGCTGCA GAATGCTTAT CATGTAGCGG GTGATCTCGT ATACCAAGTG CTCTGTGGTT CTCCATCAGG TGCTTTCGCT 
^8601      ^8611      ^8621      ^8631      ^8641      ^8651      ^8661      ^8671      ^8681      ^8691      

ACTGACAGAA TTAATAGTTT AGCAAATCTT TGCTACCATT GCTTGTGCCA CTTACGAAAG TACGGAACCC TTACAGGATT CTGGAGTCAC TACACCCTCG 
^8701      ^8711      ^8721      ^8731      ^8741      ^8751      ^8761      ^8771      ^8781      ^8791      

TGTATGGAGA TGATACGAGG AGGAGAGAAA CCGCATACAC TGGAGATGAA TTTCAAGAGT GTATGGCGAG TGTCGGAATT GTGGTTAATA GGGATAAATC 
^8801      ^8811      ^8821      ^8831      ^8841      ^8851      ^8861      ^8871      ^8881      ^8891      

TGGTGTGACA AGTTTTTTGA AACGCCAATT TATCCCCATT GATCATCGAG ATGTGAGAGT GATGCTTGCA CCACTCCCAC GGCCAATAGT GGAGGATATT 
^8901      ^8911      ^8921      ^8931      ^8941      ^8951      ^8961      ^8971      ^8981      ^8991      

CTCAACTGGG TGCGCAAACC TTATGCAAGT AAGTTGAGCG CTTTGGAGGA AACAGTTGGG TCCTATCTTT CTGAAATATT CCATCATGGA CAGGACGAGT 
^9001      ^9011      ^9021      ^9031      ^9041      ^9051      ^9061      ^9071      ^9081      ^9091      

TTAATAACTC TCGATCTAAG ATCCAGGCAA TATTGGCGAG ACATGGGTCA CACCCCGAGC TTCCTACCTT TGACGATTTG TTTCGTCAAA AGTATTTAAG 
^9101      ^9111      ^9121      ^9131      ^9141      ^9151      ^9161      ^9171      ^9181      ^9191      

CAATGGGGTT TGGCCGGTGT TAATGCCGCT GGCGAATGCG TTGGGACCGA TCCCAGCTGC CGAAAGTGAG CCGACTCACA AGGTAACCAG CGGACAAGTT 
^9201      ^9211      ^9221      ^9231      ^9241      ^9251      ^9261      ^9271      ^9281      ^9291      

GTGTGCGTGC CCCACGAGGC TGGGGAGTGC TGCGCCATAA CTTTAGGAGG GTAATCCATA GGAACCCCTC ACCAAATTTT TATTATAGTT ATAC
^9301      ^9311      ^9321      ^9331      ^9341      ^9351      ^9361      ^9371      ^9381      ^9391

Credibility of mRNA sequence:

unknown

The organism containing this mRNA with IRES segment in its genome:

Ectropis obliqua picorna-like virus

A promoter reported in cDNA corresponding to IRES sequence:
not tested The total number of notable open-reading frames (ORFs):
1

Notable Open-Reading Frames (ORFs; protein coding regions) in the mRNA/+RNA sequence:

ORF

ORF position:

1

Version: `0`
Originaly submitted by: Martin Mokrejš	Reviewed by: Martin Mokrejš

The abbreviated name of this ORF/gene:
polyprotein

The description of the protein encoded in this ORF:
polyprotein

The translational frameshift (ribosome slippage) involved:
0 The ribosome read-through involved:
no

The alternative forms of this protein occur by the alternative initiation of translation:

not tested

The ORF absolute position (the base range includes START and STOP codons or their equivalents):

391-9354

Citations:

Wang X, Zhang J, Lu J, Yi F, Liu C, Hu Y (2004) Sequence analysis and genomic organization of a new insect picorna-like virus, Ectropis obliqua picorna-like virus, isolated from Ectropis obliqua. J. Gen. Virol. 85(5):1145-1151

IRESs:

IRES:

Version: `0`
Originaly submitted by: Martin Mokrejš	Reviewed by: Martin Mokrejš
The IRES name: `EoPV_5NTR`

The IRES absolute position (the range includes START and STOP codons or their equivalents):

1-390

Conclusion:
weakly_supported_IRES

How IRES boundaries were determined:
experimentally_determined

The sequence of IRES region aligned to its secondary structure (if available):

CTTTTCAGCA ACGGCGGTAT TGAGTAATCT CTTAAGATTA TTTAATACGT GTTCTTACAT TTAAATTCAA ATAGTTAAGA TTTAATTAGG ATTAATTACC 
^1         ^11        ^21        ^31        ^41        ^51        ^61        ^71        ^81        ^91        

GATATTGTAA TCTTCTATTA TTTTATCGGT TTGAATCTCC CTTACACATA TGATTATGTA GCGTGCTTAT TAGTAGTAGA TACATCTAAA TTCTACAACG 
^101       ^111       ^121       ^131       ^141       ^151       ^161       ^171       ^181       ^191       

ACCTAATAAG TTTTGATTAT ATAAGATAGG ATGTGAAGGC TCCGATTTGT GAATAGGTTT TTATATTCGA AGTAGGTAGT ATTGCGCATA CTATTAATTC 
^201       ^211       ^221       ^231       ^241       ^251       ^261       ^271       ^281       ^291       

CACAATACGT GGTCTTCGTC TTAGCAAATT TACCTTTCGT CCCTATGGAA ATGGCTCTTC GGACCTGAGT ACAGTGGGAC AACCCCAACG
^301       ^311       ^321       ^331       ^341       ^351       ^361       ^371       ^381

Remarks:

The 5'-UTR region studied for IRES activity was tested in pRF plasmid containing the defective EMCV IRES.

Citations:

Lu J, Zhang J, Wang X, Jiang H, Liu C, Hu Y (2006) In vitro and in vivo identification of structural and sequence elements in the 5' untranslated region of Ectropis obliqua picorna-like virus required for internal initiation. J. Gen. Virol. 87(12):3667-3677

Lu J, Hu Y, Hu L, Zong S, Cai D, Wang J, Yu H, Zhang J (2007) Ectropis obliqua picorna-like virus IRES-driven internal initiation of translation in cell systems derived from different origins. J. Gen. Virol. 88(10):2834-2838

Last change to the database: 2019-03-18 09:32:49 GMT+1